Pder019172.2
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- L
- Assembly
- GCA_963942485.1
- Location
- OZ012631.1:5257692-5280261[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0013 0.12 13.3 0.3 1 23 93 115 93 115 0.97 2 15 0.28 26 6.0 5.3 1 23 121 143 121 143 0.97 3 15 1.5e-06 0.00013 22.6 4.8 1 23 149 171 149 171 0.99 4 15 0.0002 0.019 15.9 0.9 1 23 177 199 177 199 0.98 5 15 3.8e-05 0.0034 18.2 3.0 1 23 220 242 220 242 0.97 6 15 0.00037 0.033 15.1 0.6 3 23 271 292 269 292 0.96 7 15 0.11 10 7.2 0.6 1 23 320 343 320 343 0.88 8 15 1.7 1.5e+02 3.5 0.1 3 23 437 457 436 457 0.93 9 15 0.016 1.4 9.9 6.5 1 23 466 489 466 489 0.93 10 15 0.011 1 10.4 1.1 1 23 494 517 494 517 0.93 11 15 0.074 6.8 7.8 2.6 1 23 588 611 588 611 0.90 12 15 0.0023 0.21 12.6 0.9 1 23 699 721 699 721 0.97 13 15 0.13 12 7.1 0.7 2 23 851 872 850 872 0.96 14 15 0.0018 0.16 12.9 0.1 1 23 880 902 880 902 0.97 15 15 0.004 0.37 11.8 2.7 1 23 909 931 909 931 0.98
Sequence Information
- Coding Sequence
- atgaaaatgttatttaaggGTAACAGTAGTCGCTTGGAGTTACTGATAGAAAAAATACAATCAACTAAAGAAACTAGTGATATTAAGGAACTTGAAAATTCATCCTCTGTACCTGGTCCATCAAAACCAGCTACCCCAGAATCGTTAGCTGGACCATCAAATCCAACTCTACCACTCGACTTTACTTTGTCGGAAGTCTCGTCCAGTTACTCAGAACTAGAAGAGTCCAGCCAGCAGGCGTCTCAAATCAGAAGTGATGAAACCgaggaaatatatttttcgtgCTCAATCTGTAACGAGAATTTCTCAAAAGGCAAACAATTAATTGACCATGAACAAGTTCACAGTGATCATTTACAGTTTAGTTGTCTGTATTGCCCTCGTTTGTTCAAACACAAGAGATCGAGGGATCGCCATACAAAACTCCACACGGGGGATAAGAAATACAAGTGTTTACATTGTGATTCTGCATTTTCTAGAAGTGATCATCTTAAGATCCATATGCGAACACATGACAGCAGGAAACCTTACAAATGTGGGGTGTGTAATCGAGGATACAACACAGCCACCACTTTGTTTTCTCATCAACAGAATCATTTGAAAAAGGAGCCAATGTCTGGTAGTCAAACTAGTGACGACAGTAGCAGTCCATTTTTATTTCGCTGTAGTCACTGTAATGAATCCTTCAAAAAATACGATCTTTTACAGAATCACCTAATGGCCCACAGTGATATTAGCTCCCCTACAAGTCAATCATCCGTACAGAAAACTCCAGACTATCAAACGCATTACGAAGatctaaaaactttttgtcTGTACTGTTCTAAAGATTTTCCTACAAAAGATCTGCTGACAGAACATGTGAATACCAATCATAAAGATGCACAAACAGAACAAAATGACAAAACTTTGGAAATCGTGTCACCTAAAGTGGAAATTTTCGAAACTGATAACAATTATTTGTGCGATAGATGTCCAATGGAATTTTAtactatgcaaaatttaaacGATCATTTCTACAATGAACATTGGTTACCGTTGATGTTGACAAATTTAACTGATCAACATTTGAACGTTGGTCATTTTATGGCAAACCAGAGCCAAGCGACTGATTtaacaaagaaaaagaaaattgatgatgcGATTGATTCGCAGttgaaaaaacagaaaaattaccACTCAACGTTGTTTGATTCCAATGAAAAACCATTTATATGTTCGTGTTGTTATGTGCAATTACCGAATTTCAAAGCATTTTTATTGCATATGGAAACCCACATGACACCAACGAACAATTTTTCCGGTTTCTGTGTGTTTTGTGGTGAGTCCAATATAGATCCAGTTAGTTTTACCAACCATATGTTTGGACATGCCATCACTCAAGTACCAGAGTATTTTTGTTGCTGCACGTGCAAAAAAGCTTTCAACCAATATgagaaattacaaaaacatttACTGGAGATGCATGTATTGACGGTTTATAAATGCAGCATTTGCAACGAGATATTTGACACGAAATTGGCGATGAAGATGCACTTCACCAGCAAACACACCAATGGATACCAGCATTTTAAGTGTCATTTTTGCACAAATCAGGTATTTCATGATAAACTGTCCGCCGAGTTGCATATTTCTatgaaacatttaaatcaatttgCAACGTGTATGAGCGGTAATCAACTGCAATTGGCACCCTTACTGTTGCAAAACCAACAAAAGGACTTGGAATGCAACAGTCCAAAAACTTATGAGAATCGTGGATTCTGTTGTAgtttatgtcaaaaaactttCGATGATCCATATTCTCAGTATGTGCATTTTGCCAGGGAACACAACGATAAACAGGGTAAATATCTAGTGGAATCCATAAAAGACCAACTACGAAGTCCATCCCTAGCAGCAAAGTCCATATGTGAAATTATTCCCTCCTCCAACaagtttgtaaataataaaaaagagaCTGATGAGGACAGTGTTAATAAATGTAATGCTTCAACATCCGAACAGTGTTTCGTACCACATGACAATCTAAATGTTAGATCTAAAAATGGCTTGCAGAAGAGCCACCAAGTGCATTATGcatcaaaaattaaacataagtGTAATATTTGTGACGATATATTTTCATCCAGTGTGTCATTGGCTGATCATAAACTAAAGCATTGTAAAATAGTTGATGGAAATAATTGTTTGCAGTGTAAATCGCTATTGGTAGATGAGCAGACATTTTATTCCCATCAATTAAAACATAGCAATGGTCTAGTGAAAACTaatacacaaattttattaccaaCGATTTGTATCATATGTAGTCAGACGTTACAGACGGatgttgaaataaaattacacgCGAAATTCCATTTGAGTTATTTgcataataagaaaattaaatgcgGTAATTGCGGTAAAATAATTCATGACGATGTGTTTGATAATGATGGATCAAAGAATACAACTTGTAAAGAATGTATCGTTCAATTCACTAGCGACAAAGAAAAGATTGTTccgtatgaaaaaattgattgTGACAATCCAGAAGAAACAGAAAATCAGTGTCACTTgtgtaaacaaattttaggcTCCCAAGGCAAGCTGCAGCTTCATTTAATAGAGCACAATTTCTGCGGCATGAATCAATATAGCTGTTATGTGTGTTCATCAGTTTTTACAGCTGCCAGCGGCTTACAAAACCACATGTTAGAACACAATATAGAAAACAAACCGTACGAATGTCCAAATTGTCATCTAACATTCTTTTTCCGAGCTGAATTAGACAATCATAGATTTACTCACACAATACAACATTCACCATCATCACAGTTTGATTTTACCGATAATTCAttttataatCAGTCAACGTTGAATCAAGAAGAGTTTCATGATATAATCGAGATTACTTCTAAGAAAATTGCAATGGAAAAGGAGCTACTcttgcaaattataaaagatttCATCGAAGAAGAAAGACAACATTCTGAAGGTCACGTTACAACTGAGCAGCGTTTAATACAAGAAGTTATGAGTGCAAGAGACaacaatgttaaaaataaaggaaaaaTGCTTACGGTTAAATCGACTGTGGGACCAATACAAGTTGTAGAAAGAGACGTAGTAGATACGGCTGGGCCTTCTAAGGGTGTCCCACAGCGGAGAGTTATAATACGAGTTCCAGGAAATCATGCTGTCTTGGAATTGGGTGATGTACAATTTCAATGTATTGCAAATGTTGTTAACGGCAAAAGAAAGGTGTCCTTCCTTCCAATGTCGACAAATGGAGTAGTCCTGAGTGGACACTACAGAAGAGGAAATGGAaactaa
- Protein Sequence
- MKMLFKGNSSRLELLIEKIQSTKETSDIKELENSSSVPGPSKPATPESLAGPSNPTLPLDFTLSEVSSSYSELEESSQQASQIRSDETEEIYFSCSICNENFSKGKQLIDHEQVHSDHLQFSCLYCPRLFKHKRSRDRHTKLHTGDKKYKCLHCDSAFSRSDHLKIHMRTHDSRKPYKCGVCNRGYNTATTLFSHQQNHLKKEPMSGSQTSDDSSSPFLFRCSHCNESFKKYDLLQNHLMAHSDISSPTSQSSVQKTPDYQTHYEDLKTFCLYCSKDFPTKDLLTEHVNTNHKDAQTEQNDKTLEIVSPKVEIFETDNNYLCDRCPMEFYTMQNLNDHFYNEHWLPLMLTNLTDQHLNVGHFMANQSQATDLTKKKKIDDAIDSQLKKQKNYHSTLFDSNEKPFICSCCYVQLPNFKAFLLHMETHMTPTNNFSGFCVFCGESNIDPVSFTNHMFGHAITQVPEYFCCCTCKKAFNQYEKLQKHLLEMHVLTVYKCSICNEIFDTKLAMKMHFTSKHTNGYQHFKCHFCTNQVFHDKLSAELHISMKHLNQFATCMSGNQLQLAPLLLQNQQKDLECNSPKTYENRGFCCSLCQKTFDDPYSQYVHFAREHNDKQGKYLVESIKDQLRSPSLAAKSICEIIPSSNKFVNNKKETDEDSVNKCNASTSEQCFVPHDNLNVRSKNGLQKSHQVHYASKIKHKCNICDDIFSSSVSLADHKLKHCKIVDGNNCLQCKSLLVDEQTFYSHQLKHSNGLVKTNTQILLPTICIICSQTLQTDVEIKLHAKFHLSYLHNKKIKCGNCGKIIHDDVFDNDGSKNTTCKECIVQFTSDKEKIVPYEKIDCDNPEETENQCHLCKQILGSQGKLQLHLIEHNFCGMNQYSCYVCSSVFTAASGLQNHMLEHNIENKPYECPNCHLTFFFRAELDNHRFTHTIQHSPSSQFDFTDNSFYNQSTLNQEEFHDIIEITSKKIAMEKELLLQIIKDFIEEERQHSEGHVTTEQRLIQEVMSARDNNVKNKGKMLTVKSTVGPIQVVERDVVDTAGPSKGVPQRRVIIRVPGNHAVLELGDVQFQCIANVVNGKRKVSFLPMSTNGVVLSGHYRRGNGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -