Basic Information

Insect: Pediacus dermestoides
Gene Symbol: -
Assembly: GCA_963942485.1
Location: OZ012629.1:4514480-4522532[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.53 48 5.1 1.2 3 23 239 258 238 258 0.91

2 16 0.49 45 5.2 1.7 1 19 268 286 268 292 0.94

3 16 0.31 28 5.9 4.3 2 23 296 317 295 317 0.93

4 16 0.13 11 7.1 0.4 1 23 340 363 340 363 0.92

5 16 6.6 6e+02 1.7 0.3 5 23 371 389 368 389 0.91

6 16 0.35 32 5.7 0.3 1 22 394 415 394 418 0.87

7 16 7.2e-05 0.0066 17.3 4.3 2 23 423 444 422 444 0.98

8 16 9.5e-06 0.00086 20.1 2.0 1 23 450 472 450 472 0.97

9 16 7 6.4e+02 1.6 0.1 1 13 477 489 477 490 0.87

10 16 6.1e-06 0.00055 20.7 0.4 1 23 491 513 491 513 0.99

11 16 0.27 25 6.0 1.8 3 23 527 548 525 548 0.89

12 16 0.0052 0.47 11.4 5.6 1 23 551 574 551 574 0.96

13 16 0.052 4.8 8.3 1.3 1 23 580 602 580 602 0.95

14 16 3.7e-06 0.00034 21.3 0.4 1 23 608 630 608 630 0.99

15 16 0.019 1.7 9.7 2.7 1 23 636 658 636 658 0.97

16 16 0.00096 0.087 13.7 7.0 1 23 664 686 664 686 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.53	48	5.1	1.2	3	23	239	258	238	258	0.91
2	16	0.49	45	5.2	1.7	1	19	268	286	268	292	0.94
3	16	0.31	28	5.9	4.3	2	23	296	317	295	317	0.93
4	16	0.13	11	7.1	0.4	1	23	340	363	340	363	0.92
5	16	6.6	6e+02	1.7	0.3	5	23	371	389	368	389	0.91
6	16	0.35	32	5.7	0.3	1	22	394	415	394	418	0.87
7	16	7.2e-05	0.0066	17.3	4.3	2	23	423	444	422	444	0.98
8	16	9.5e-06	0.00086	20.1	2.0	1	23	450	472	450	472	0.97
9	16	7	6.4e+02	1.6	0.1	1	13	477	489	477	490	0.87
10	16	6.1e-06	0.00055	20.7	0.4	1	23	491	513	491	513	0.99
11	16	0.27	25	6.0	1.8	3	23	527	548	525	548	0.89
12	16	0.0052	0.47	11.4	5.6	1	23	551	574	551	574	0.96
13	16	0.052	4.8	8.3	1.3	1	23	580	602	580	602	0.95
14	16	3.7e-06	0.00034	21.3	0.4	1	23	608	630	608	630	0.99
15	16	0.019	1.7	9.7	2.7	1	23	636	658	636	658	0.97
16	16	0.00096	0.087	13.7	7.0	1	23	664	686	664	686	0.98

Sequence Information

Coding Sequence: ATGGATAATACTGCGTATAACGAATTATTACGATTGGTGACTTCTTCAATAGAGCAACATAATACTGTGATGCACGAATCTATATCGTCTCATGAAAGATTACGttttattttgagatttttgaCTGAGGACACGGCTTGCATGATGTCCACACGCTCAAGCTTTACCGCGCAAGCTGAGTTTGCACAAACCAAATCTTTGGCAAGTCGAAGTTTGCGCAAGCCGCGCTTTTCGGTTTGTGCGAGCTACCGTTTTGCCGGCTACACGCACGCGGTACCCGATACAAACCGGTTTGCGCAAGTTGAAGAAACTGATGCTTTGCCGAAGAGTATGTGTTTGTCGTGTGTAGCTATTTTATATCAAACACATAACTTTTTGAATCTATGTAAAATCTCTTTTAAGAGAGTACACGACTTTATGGATATACAACGACATTTCAAAGAAGAGCATTGCTATGCAAAGGAAACCGACAAAAATAAGCCCTCACAGGATAATTTGGAAATTACCGCAGAAAAACTACGCGACACACAAATTAGTTTAATTCAATGTTACGAAGAAAATAATGATGCTGTATTGAACCAGAATGATGATTTAGTTGATATAACAGAAAATCCCGTTTTTGATCCTACTGAAAATAAGAAAACCAAAATTGTGaacatgaatgaaaaaaacaaagaaaataaggTGATAAAATCGCAAACAGACATGAAAATTTGCTATGTTTGTGACAAAAATATGTTGCCCCATTCTTTAATACGACATTTAAAGACtcatttaattctaaaatctCTTCAAAAAGGATACACATGTATGAAATGTAAAGTGAATTATAAAAGTGTCGCTGAACTAAAAGAGCATTGTGAAACGGAGAGTCATTTATTCAAGACATGTTTAACTTGCAATAAAACCTTCACTAACTTGTTGTCGCATTACAAACACATGCAACTGCACCAGGAAATGGGCTCTAGTAACAACACGCCTATAACAATATTACGTAAAAGccgaaaacaaaaaaaattcacttgcAAAGTCTGTGACGTGGAGTTTGAAGGGTTCTCCGATATTTATTCGCATTATCAAGCGTATCACTACGACTCCACGGATTGTATTATATGCCAGAAGAAATACATTCTCGCACGTCGTGTTCGATATCACATAAACTCGCATAGTGACAAGAAATTTTCTTGTTATCCATGCAAGGTAGCTTTTGATAATCGTGAGGAACTGGATAAGCACAAACAATCGGAAGGACATGtaaataggaaaaaatgtaGTATTTGCTTTAAATCGTTTCGTAATAAGCATCGTTTGGCAATCCACATGCAAAGTCACAAGGAGGAGAAGCCGTTTCAATGCGACGAATGTGGCAAACAATTTTCATACAAGAGTAGTTTTGGAAGACATAAAGCACGTCATGCTGGAATGACCTATATATGTGATGCTTGCGGCAAagaGTCATCCCACAAGATGTACAAATGTGTGGAGTGCCCCAGACAGTTTGTATTTAATGGATTGTTGAAGCGTCACATTTTAACTCACCAGTGGCAGACACGAGATGATGTAGACAGCTTGGACTGTTGTCGTTTATGTGCAACTCAGTGTAACAATCAGGACGAACTAATCAAACATATTGTCGAAGAACACCACATTCATCCTTGTGTCGAGTGTAAGAAGTGCTTCATGTATAAAAGTATGTTGGTACAGCACAACAGGAGGAAGCATTTGGGGATGTATAAGTATAACTGTAGCTTTTGTGATAAAGGTTTTGATATTAAACAGTTGATGGAGAGCCACGAACATATCCACACTGGATATAAACCTTATGTTTGTGAGATTTGCCAGGCAGGGTTTAGGCAAAAACCTCATTTGATTTCGCATATGTTGACGCATACTGGAGAAAAACCGTACAATTGTCGGTTTTGTAATAAGGCTTTTGCGCATCTGACTACTCGCATTACTCATGAGAGGATACACACTGGAGAAAAACCACATACATGTAACTTGTGTAATAGAGGATTTTATCATTCGTCTACTATGAAGAAACACAGACTTacacattataaataa
Protein Sequence: MDNTAYNELLRLVTSSIEQHNTVMHESISSHERLRFILRFLTEDTACMMSTRSSFTAQAEFAQTKSLASRSLRKPRFSVCASYRFAGYTHAVPDTNRFAQVEETDALPKSMCLSCVAILYQTHNFLNLCKISFKRVHDFMDIQRHFKEEHCYAKETDKNKPSQDNLEITAEKLRDTQISLIQCYEENNDAVLNQNDDLVDITENPVFDPTENKKTKIVNMNEKNKENKVIKSQTDMKICYVCDKNMLPHSLIRHLKTHLILKSLQKGYTCMKCKVNYKSVAELKEHCETESHLFKTCLTCNKTFTNLLSHYKHMQLHQEMGSSNNTPITILRKSRKQKKFTCKVCDVEFEGFSDIYSHYQAYHYDSTDCIICQKKYILARRVRYHINSHSDKKFSCYPCKVAFDNREELDKHKQSEGHVNRKKCSICFKSFRNKHRLAIHMQSHKEEKPFQCDECGKQFSYKSSFGRHKARHAGMTYICDACGKESSHKMYKCVECPRQFVFNGLLKRHILTHQWQTRDDVDSLDCCRLCATQCNNQDELIKHIVEEHHIHPCVECKKCFMYKSMLVQHNRRKHLGMYKYNCSFCDKGFDIKQLMESHEHIHTGYKPYVCEICQAGFRQKPHLISHMLTHTGEKPYNCRFCNKAFAHLTTRITHERIHTGEKPHTCNLCNRGFYHSSTMKKHRLTHYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -