Pder011403.3
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- salm
- Assembly
- GCA_963942485.1
- Location
- OZ012627.1:23441339-23447444[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.9e-06 0.00045 21.0 0.9 1 23 376 398 376 398 0.98 2 9 6.7e-06 0.00061 20.5 1.9 1 23 404 426 404 426 0.98 3 9 0.061 5.6 8.1 3.8 2 23 743 764 742 764 0.98 4 9 4.2e-08 3.9e-06 27.5 0.6 1 23 770 792 770 792 0.97 5 9 5.9e-05 0.0054 17.6 2.6 1 23 802 824 802 824 0.98 6 9 0.009 0.82 10.7 2.4 2 23 1092 1113 1091 1113 0.97 7 9 0.044 4 8.5 1.0 1 14 1119 1132 1119 1133 0.93 8 9 1.4e-06 0.00012 22.7 4.0 3 23 1283 1303 1281 1303 0.96 9 9 1.9e-07 1.8e-05 25.4 0.9 1 23 1309 1331 1309 1331 0.98
Sequence Information
- Coding Sequence
- ATGTATTCAAGAGTGCAGTCCTCGTACTTGCTCTTGCGCCTCTTATATCATCATCACAATCAGTTGACTTATAATAGTGTTTCGTTTGCAGATGGATCTTGCATCAATGCAACCGCGGCGACTCCACAAGACCTGCCGGATGTGCTTATGTGCCAGCGATGTCAGGAGCAGTTCACCGAAGTACAAGAGTATCTAACGCACAAAGTCGAATGTGACAAAAAGGCAATTAAACACGATGACCCTGCACACTCCGACCCGGAGGACATGGTGGTGTCCGAGGAAGAGGACGACGAGGATGAAGCTGGAGGCAAGAGACTCGAACGTATGCGACGGCACCGACAAGACGCCGCAAACAACAACAGCGTTGAAGAGAACTCACCAGACGACGAGACCACCGCCAGGCCTGGGTTTCCGTTTCCAGTGCCTGCTGCTCCAGGGCATGTCACCTTGGAAGCGTTGCAAAACACAAAAGTTGCTGTTGCCCAATTTGCTGCCACAGCATTGGCAAACAACACCGACAATGAGCAAGCGTTACAAAATCTTGCGGTACTCCAATCAACGCTGTTTACACTTCAACACCAACAAATGATGCAAATGCAGTTGATAAGCAAATTGCAGCAACAGTTACAAATTGATAGACCCAAAGAAGATGACGGCGCGCCTGTGTCGCCACCTCCATCAGAGAACGAGGCTGAACCCACCCCTGCTGATTCACCATCACCATTGCAAGTTATGCCGCCGTCACCTGAACCTTCACCGAGCTTTCCACCACCGATAAGTCTAAGTCAGCCAGTtgcacaacaacaacaacaaccaaCAACACTTATTTTAGAATCTGCCTGTGAAGTGTCTGTACCTTCATCTCTACCTCCATCGATTCAGCCGCCGATGTGTTCGATATCAGCGTCTTTAGCTTCCACTATTATAACACATAATAATGATCCTCCACCAGGTCTGGACGAACCAAACACCCTGGAAATGTTACAGAAAAGAGCACAGGAGGTCTTGGACAATGCCAGCCAAGGATTACTGGCTACAAATCTGGCTGACGAACTGGCTTTCAGGAAAAGTAAAGGTTCAATGTCACCGTATGATTCAAAAGGTAGAAACGAACCGTTCTTCAAACATCGCTGTCGATATTGTGGAAAGGTTTTTGGTTCCGATTCAGCTCTACAAATACATATCCGTTCACACACTGGCGAACGTCCATATAAGTGCAATGTTTGTGGCAGTAGATTTACGACGAAAGGAAACTTAAAAGTTCACTTTCAAAGACACAGTGCTAAATTTCCGCATATCAAAATGAATCCTAATCCGGTTCCCGAACACTTAGACAAATATCATCCTCCATTACTAGCACAAATTGGACAGCAACCCTCGCTGTCACCTGGCGGACCTCCACATCCTTCTCACATGGGTTTTCCAGGAAGTCATCCGTTCCCACCTACATCTTTACCAATGTATAGGCCGCAAGGTCCACCTCCTCCTGACCTTATTAACAGTAGACTGCAACCATCACCACAGAGATTACAAGATGTACCACCAAGATTATTTCCTCCTCATACACTGTTTATGAAAAGGGAAGAACAGGAAACTCCTGAAAATTTAAGCAAACCCGTAAGATCTCAAACGCCGGTTCAAGAACTTAATCAATTTAAATCGGAAGTATCACCTGAAGACAAACGGGAAATGGATGAGTTAAGGCCTCAAATTAATATACCACAGATAACACCAAAACAGGAACCCACTGATGTCGATAATGATGTTGATAATGAACCAGAAAGATATGATTCACCAATACCTTATGATGATTTAAGTGGTGATGGCGATAGCAAGTATAGCAACGAAGACATGTTGGAGCAACGAAGCCTGGGTGGTCCAGATCAATCGGAAAATATGCAGGATGAACctgaaaatttatcaaataaaagtaattcGCTTAATATTCCTTTAAGTATCTCAACTGGCCAAAGATTGCCTGCTAATTTCTCGTTCGGGCATGCGACTTCGCCCCCTAGTAGTACATCGTCTGGTAGTTTAGGACCGTTTCCAACGAATCCACTAGCAGATATAACAAAAGACCCAGCAATTTACACGAATTTACTACCGCGACCTGGCAGTAACGACAATTCATGGGAGAGTTTGATAGAAGTGACAAAAACCTCGGAAACCAGCAAACTCCAGCAGCTCGTTGACAATATCGAACATAAACTCTCAGATCCAAATCAGTGTGTGATATGCCATCGAGTGTTGTCGTGCAAAAGCGCTTTGCAGATGCATTATCGAACTCACACCGGCGAGAGACCGTTTAAATGTAAGATTTGCGGGCGCGCTTTCACCACAAAAGGCAACTTGAAGACACACATGGGAGTGCACCGTGCCAAGCCCCCAATGCGCGTTTTGCATCAGTGTCCAGTTTGCCACAAGAAATTCACAAATGCATTGGTACTGCAACAACATATCCGTCTACATACAGGCGAACCAACTGATCTCACCCCAGAACAAATTCAAGCAGCCGAAGTTAAAGACTTTCCTTCTCCAGGAGGTTTTCCAGGCCTTCCTAATTCCATGCATCCATTCCTAAGTTCTGGTTTTTCCGTTCCTGGACTGTCTCCATTAGGTCCTGGCGGGATGCCTCTCAATATGAAGTTCGATAAAGATGGACGGTCAGAACACGAGAGTATGGATGATGACGACGATGACGATGATGACATGATGAGTACATCAGAGCATCAGAACATGGCGCCATTTTCCAGTTCCCCAACTGATATCCACAACAGTAGCCTGCCAGCAAGCACAATGTCCTCCAGGTTGAACATTTGTGGGTTGAGTTGTTCCGTTGAAGATTTGTGTTCAAGCCGGACGGCTGCTTCGGTGTCACCAATGCAAAACGGTGAAAAATCCCCTAGCCAATCGGGTGTGACAAGTCCGGAAAGTTCGGAGATTCGCTCATCGCCGAATCATGTTTCCACCACCCCCGTCCAGGTTCCTCGTCCACCATCGTCTCAACAAGCAGGAAGTCCAACACCATCCGATTGTAACTCCATGGGGGCACTGGATTTAACGCCTAGGACAAATCAACCGCCGATTACCAGTCCTGGACCTAGTCCTGGAGCTCCTCCTTCACTGTTCACATTTGGACTTTTACCGCCTGGGCAAGGGAATTCGCCTCTGATGTCGTCGGCTTTGTCCTCGTTAACGTCGTCGGTATTAACGTCTACCTCATTCAGCCCGTTGAGGCTCGCCGTTGGACCAGCAGgaCGTGGGAACACCACCTGTAATTTGTGTTTCAAAACATTCGCCTGTAATTCCGCTTTGGAGATCCACTACCGAAGTCATACAAAAGAACGGCCCTTCAAATGTACCGTATGCGACAGGGGATTCTCCACCAAGGATGGTTGTGTGTGCAAGCAGAGGCGTATCCAGGATGAAGCAGAACCTTGGAGGGCACGTAAAAGGAAACCTGCTCCTCGCAAGTCAATACCTTCTGTATTTCCATTACCGATGAGCCCTGGATACGCCTCAAACTGGATGCATATGGCGGGCAATATGAAGCAGCACATGCTGACTCATAAAATACGCGATATGCCACAACACATGTTCGATAACAAACCACCATCCCTAAGTGAAAACGATTCGGTTGCCCATTTACCATCAAACATGCAAAATCGGGAGGCGTCTTCGAGTGACAGTGAACAACCGCCCCAGCAACCACCACAATTACCCCAGCCACCCCCACAGCCTGCTGCAGAACCAAAGGAAACTCAACCCGTTAAGCGAGAACCAACTGAGACTGAACTACCTTTGCCCAAACGTCCACCAAGCTTACAAGCAAGTAAGCACTTATGCCATGTGTGCAATAAGAACTTCTCATCCAGTTCAGCTCTTCAGATTCATATGCGTACGCATACGGGGGACAAGCCTTTTCGATGTACCGTCTGTCAGAAGGCCTTCACCACTAAAGGCAACCTCAAGGTACACATGGGCACCCATATGTGGAGCAACGGAGCATCTCGTCGAGGACGTCGCATGTCCCTCGATCTGCCCCCCTTACCCATGACACCCAAGGATTCCGAATTTCTCCAGCGGAGGCCAGATCTCTTCTACCCGTACCTTCCGGCCCCATTCCTTAACGGAATGCAACAAAAGTTGAACGAGATGTCAGTGGTACCATCAAACCAAAACGGCCTAACAGCCCCCGGTAAGTACAGTGGACTGCTGGGATTCGGCTATCCACCACCAGAGGCTCTACGATCTCAGGCAAGCTCACCAGAACGCAGTGAGAGACCACCAAGTCGTGATCCTGAAAGAGGCCTATGGGATTTACATTTTGACCGAAAACCAGCTACAGAAGCACCTCGCGAAGATTTATTGTCAGCTTCCCGAGAGGGCTTAGCTGCTTGA
- Protein Sequence
- MYSRVQSSYLLLRLLYHHHNQLTYNSVSFADGSCINATAATPQDLPDVLMCQRCQEQFTEVQEYLTHKVECDKKAIKHDDPAHSDPEDMVVSEEEDDEDEAGGKRLERMRRHRQDAANNNSVEENSPDDETTARPGFPFPVPAAPGHVTLEALQNTKVAVAQFAATALANNTDNEQALQNLAVLQSTLFTLQHQQMMQMQLISKLQQQLQIDRPKEDDGAPVSPPPSENEAEPTPADSPSPLQVMPPSPEPSPSFPPPISLSQPVAQQQQQPTTLILESACEVSVPSSLPPSIQPPMCSISASLASTIITHNNDPPPGLDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKSKGSMSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQIGQQPSLSPGGPPHPSHMGFPGSHPFPPTSLPMYRPQGPPPPDLINSRLQPSPQRLQDVPPRLFPPHTLFMKREEQETPENLSKPVRSQTPVQELNQFKSEVSPEDKREMDELRPQINIPQITPKQEPTDVDNDVDNEPERYDSPIPYDDLSGDGDSKYSNEDMLEQRSLGGPDQSENMQDEPENLSNKSNSLNIPLSISTGQRLPANFSFGHATSPPSSTSSGSLGPFPTNPLADITKDPAIYTNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPGLPNSMHPFLSSGFSVPGLSPLGPGGMPLNMKFDKDGRSEHESMDDDDDDDDDMMSTSEHQNMAPFSSSPTDIHNSSLPASTMSSRLNICGLSCSVEDLCSSRTAASVSPMQNGEKSPSQSGVTSPESSEIRSSPNHVSTTPVQVPRPPSSQQAGSPTPSDCNSMGALDLTPRTNQPPITSPGPSPGAPPSLFTFGLLPPGQGNSPLMSSALSSLTSSVLTSTSFSPLRLAVGPAGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKDGCVCKQRRIQDEAEPWRARKRKPAPRKSIPSVFPLPMSPGYASNWMHMAGNMKQHMLTHKIRDMPQHMFDNKPPSLSENDSVAHLPSNMQNREASSSDSEQPPQQPPQLPQPPPQPAAEPKETQPVKREPTETELPLPKRPPSLQASKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPLPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEMSVVPSNQNGLTAPGKYSGLLGFGYPPPEALRSQASSPERSERPPSRDPERGLWDLHFDRKPATEAPREDLLSASREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01227602;
- 90% Identity
- -
- 80% Identity
- -