Pder012847.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pediacus dermestoides
Gene Symbol
-
Assembly
GCA_963942485.1
Location
OZ012628.1:2946608-2950066[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0006 0.055 14.4 0.4 3 23 122 143 121 143 0.94
2 21 2.5 2.3e+02 3.0 7.8 1 23 257 280 257 280 0.95
3 21 0.029 2.6 9.1 6.0 1 23 307 330 307 330 0.95
4 21 0.61 55 4.9 0.1 5 20 341 356 340 358 0.92
5 21 0.12 11 7.1 0.4 1 23 364 387 364 387 0.90
6 21 4.6e-06 0.00042 21.1 0.2 3 23 463 483 461 483 0.97
7 21 0.13 12 7.0 0.2 1 23 503 525 503 525 0.89
8 21 7.6e-05 0.007 17.2 0.3 2 23 529 550 528 550 0.96
9 21 0.013 1.2 10.2 0.2 3 23 580 600 579 600 0.97
10 21 0.012 1.1 10.3 0.1 1 23 613 636 613 636 0.95
11 21 2.9 2.6e+02 2.8 1.5 2 23 650 671 649 671 0.95
12 21 0.00019 0.017 16.0 8.0 1 23 715 737 715 737 0.97
13 21 0.0069 0.63 11.0 0.7 3 23 758 779 758 779 0.95
14 21 0.0001 0.0094 16.8 1.4 1 23 801 823 801 823 0.98
15 21 0.0015 0.13 13.2 0.1 2 23 836 858 835 858 0.93
16 21 0.04 3.7 8.6 0.8 1 23 868 890 868 890 0.92
17 21 1.8 1.7e+02 3.4 0.0 1 23 929 952 929 952 0.93
18 21 0.043 3.9 8.5 2.3 2 23 963 984 963 984 0.97
19 21 0.00015 0.014 16.3 1.4 1 23 1023 1046 1023 1046 0.96
20 21 1.6e-05 0.0015 19.3 1.1 1 23 1054 1076 1054 1076 0.98
21 21 0.0022 0.2 12.6 0.1 1 23 1091 1114 1091 1114 0.94

Sequence Information

Coding Sequence
ATGATCTGCAGGGACTGCACCaccaaaataaattctttCCACCGCTTCAAAGAGGAATGCTCAGAAAATCAAACCAAACTAGAACAGTGGCacctttttcaaataaacgaaGCAGCCGACATGAGCATTCAAATAAAGGAGGAACCGGTCGGTGATGATGACGATATGGTTCAAATAACCCACGCCGATGAAAACGGACGTGTAAAAGCCGAACCATCAGAAGCCGAGGTAATTGACGAGGATTTTGATTACCCTCCACCTTTGACCCCGTACCCACCACCGGATAAATCCATGGACGGAACCGAGGACGAGGATTCGCAAATTAGCGCCAATTCATCTACCTCCAAAGAGTCATCCAGAAATTGTTCCATTTGTGACAAGGCGTTTAGCAGCGTAGGCAATCGGAAGAGGCATGAGAGAGATATACATCCAAAGACACGAATGGACAATCGTATATCAATTGTCCCTACCATTGAGGAGAAATCTCAGAATTCAGTTGATTCACAACCGGCTTCTAGCCAAGTCCAAGTGGAAATAGACGATgaaatgcaaaaaattcaGTTTGCAGCTGGGTTGAAATTGTTGCAAACCAATGAAACACCCATTGCTTTTGAGGCACTGTCGAAGATTGAACTAAGCTACATAGAAAAGTGCAAAGCAATGGTCAACATGTATAAGAGCTTTATCTGCGCCTGCCATGATGTCCAACATCCAAATTTAAAAGGATTACTGTCGCATTTACGCTCAATACGCGTTTGGTTTCCAGTTTTCACTTGTTATAGTTGTATGATAACATTTTGTGATCGATCATCCTTTACAAGACACAGCATGAGATGCCACATTCCAACAACAGACGcactaataaaattatctcacTTAAGGAAGCGAAGCGAAGTTAAAACCAGACTGTACCAAAACTTCAGATGTACCATTTGTAAGTTTATGTTCAGTTTCCATGAGGAATTCTGCAAACATGTTAATGAAGAACACGTCGTAGCCGAAGAGGCACCTTTTGTTTGCACATGCACACGAAGTTTCACTAATGTAGAGGATTATAAAGATCACATCTATGTTAGTTGCTTAGTTGAGTTTTTTTGTGATGTATGTTTTACTAGTGTGAAATCATTGGAAGCGTTTAAAAAACATGCAAGTGAAGCACATGATAACTCAGAAGGATTTGAGTTATTACAACAGGATAACTATAGAATGCGCAAATCCATTACAGCTCCTAAACCAGTCACCCCTGAAGATCCACCAATTCTACATACCAAACGAAGAAGTTCATTCTATAATAGAAAGACGGTTTACGAGCAACCTGAAGTAGAGGAGGAGAAGCCTGTACCGTTTAGAGTTCCTAATCCAGCAAGCAAAAAGAAACCAACCGCATGTCCTATATGTGGTAAAATGTATTCTACATATGCCAATATGGTTCGTCATTACCGCTCACACACCAAAGGAGAAATAGCACGATATGAAAGTAGTAAACAAACCAAGAATCAGTCGTTTTACTCGTGCCCTGACTGTGGAGGAATGTACGATTCCGAAAAATGGCAGCAACATTTAACCGAAAAACACGAAAGCGTTACTTGCTCGGAATGCGGAAAAGTTTTCCAATTCCAATCTGAATTAGACCAGCATCGCAGCGTACACCTCAATTTGAAAGTGTACAGAGACTCGAAAACTCAAGCCTATAAAAGCACCAAACTTAGTCCAAATTCTGAAGAAGCTATGCTGTTATGTGTAACATGTGACATATCATTTGAGACAGAAGAGGAGTTCAGGGAACATAAAGCAACGCATGGGGAAGAACTGGCGTCTGAAGTAGATGATAATGGTTTCCGATGTAAAATATGTGATTTAGGATTCCCAGGGTACAACGCTTTATGGGAGCATAATCGACTGAATCACCCAAATGTTCGAACTCCTCAATCGAAAGACTTTCCAAAACAATGCAAATTTTGCGACAAATTATTGTACACTGGTGGTTCGTATTTTATGCACAAACAAATGCACGagaaaattatccacacatctggtttaattaaagaagaaAGAGATGCTAAACCAACGAATGTTAAAATGATTAAAAGTAAACGCCTTATGGACGCGGACAATGACGAGGATGACGAAGATTCATCTTACCACACTTGTAGGAAGTGTTTCAAGGTGTTTTCCTCAAAATGTAACTTAACTAAGCATATGGAATCTCATGGGGTTAATATGAGTATTGTTAGTCGAAGCAGCACTAAGAAAGTAACCAAGAAGATGTGGTGTAATATTTGTCATGTTTCGTTTGATAGTGCTAATTTACTGGAACAACATAAACAAGAAGAACATGGTTTGGAGGATATGCCCACTTTAGTAAACCAAACAGACTCCGTGGATATCAAGGGAGTGATATTTACTTGTGATATATGCGTTATGACTTTCACCTCAAGAACTGCATTGAAAAAACACAAGGAGAGGCATATATATGATCTGAAGCAACCAACAAAAACCTCAATTTACTgtaaatattgcaaaattgGTTTCGATAATGTTGCGGCTTTAAACAAGCATATGACATTGGAACACAACAAAAACAAGAACAGTGATGGTACTTTCGCTTGTAGTGTTTGCAAGAAAAAGTTCCAAACCGCCATGGCGAGGCACGCTCACATGGGATGGCATAAACGCGATAAAACCACACTTAGTGGAAAACCAGGAAAAGTCCTCAAGCAAAACAAAATCGTTACCAAAATGGCTCGCGCCATGATGAAACCCCCAGTTATAGTTAAACCCGAGTTCCAATGCACTACCTGCCTGGCGGAACTGCCTAACGATACAGCTCTTCAAATTCACATATTGGAAAAGCACCGTAATGTCAACGCCATCATGCTAATTCCTCGCTGCACCACTTGCAATCTGGACTTTAAATCGCAGGAGGAGTACGATACTCATAAACGTTTCCATGATTTCTTGGAACGACAGCAACAACAGACGGCGTTGTTGAGCCCGAGCAAAGCTAAAATACCGAAAATGTCGCCTGTTACAATTACGAAACAACCACAACAGAAAACCAGAAATTTTCcttgtaattattgtaaagctaCCTTTAGTAAATTGGAAACGCTTACAACTCATGTGCGCCAGTTTCACAAGGATGCTTCGGGTGGTGAATTTAAATGTACCCAGTGTGATAGGGTATTCGATAAACAAAATTCGTTAAGTATTCATTTGAAAGTGCATGAAAAGCAGCGATCTACCAATAATGTGGGTGCTAAAGCGATGTACTCATGTTCCATTTGCAACATGGGATTTGAATTACCAAAGGATCTTAGAACGCATACGATTAATGCGCATCCTTTCTGA
Protein Sequence
MICRDCTTKINSFHRFKEECSENQTKLEQWHLFQINEAADMSIQIKEEPVGDDDDMVQITHADENGRVKAEPSEAEVIDEDFDYPPPLTPYPPPDKSMDGTEDEDSQISANSSTSKESSRNCSICDKAFSSVGNRKRHERDIHPKTRMDNRISIVPTIEEKSQNSVDSQPASSQVQVEIDDEMQKIQFAAGLKLLQTNETPIAFEALSKIELSYIEKCKAMVNMYKSFICACHDVQHPNLKGLLSHLRSIRVWFPVFTCYSCMITFCDRSSFTRHSMRCHIPTTDALIKLSHLRKRSEVKTRLYQNFRCTICKFMFSFHEEFCKHVNEEHVVAEEAPFVCTCTRSFTNVEDYKDHIYVSCLVEFFCDVCFTSVKSLEAFKKHASEAHDNSEGFELLQQDNYRMRKSITAPKPVTPEDPPILHTKRRSSFYNRKTVYEQPEVEEEKPVPFRVPNPASKKKPTACPICGKMYSTYANMVRHYRSHTKGEIARYESSKQTKNQSFYSCPDCGGMYDSEKWQQHLTEKHESVTCSECGKVFQFQSELDQHRSVHLNLKVYRDSKTQAYKSTKLSPNSEEAMLLCVTCDISFETEEEFREHKATHGEELASEVDDNGFRCKICDLGFPGYNALWEHNRLNHPNVRTPQSKDFPKQCKFCDKLLYTGGSYFMHKQMHEKIIHTSGLIKEERDAKPTNVKMIKSKRLMDADNDEDDEDSSYHTCRKCFKVFSSKCNLTKHMESHGVNMSIVSRSSTKKVTKKMWCNICHVSFDSANLLEQHKQEEHGLEDMPTLVNQTDSVDIKGVIFTCDICVMTFTSRTALKKHKERHIYDLKQPTKTSIYCKYCKIGFDNVAALNKHMTLEHNKNKNSDGTFACSVCKKKFQTAMARHAHMGWHKRDKTTLSGKPGKVLKQNKIVTKMARAMMKPPVIVKPEFQCTTCLAELPNDTALQIHILEKHRNVNAIMLIPRCTTCNLDFKSQEEYDTHKRFHDFLERQQQQTALLSPSKAKIPKMSPVTITKQPQQKTRNFPCNYCKATFSKLETLTTHVRQFHKDASGGEFKCTQCDRVFDKQNSLSIHLKVHEKQRSTNNVGAKAMYSCSICNMGFELPKDLRTHTINAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-