Pder016189.1
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- -
- Assembly
- GCA_963942485.1
- Location
- OZ012629.1:14968093-14970657[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.32 29 5.8 2.6 2 19 224 241 224 247 0.94 2 18 0.00033 0.03 15.2 0.7 2 23 251 272 250 272 0.97 3 18 3.9 3.6e+02 2.4 2.0 1 23 293 316 293 316 0.92 4 18 0.049 4.5 8.4 0.9 3 23 322 342 320 342 0.93 5 18 8.6e-05 0.0079 17.0 1.2 1 22 347 368 347 371 0.91 6 18 0.00027 0.025 15.5 0.5 2 23 376 397 376 397 0.94 7 18 2.7e-07 2.4e-05 24.9 0.9 1 23 403 425 403 425 0.99 8 18 0.0032 0.29 12.1 2.1 1 20 430 449 430 453 0.87 9 18 1 94 4.2 0.7 1 23 474 496 474 496 0.91 10 18 0.00027 0.024 15.5 0.1 3 23 504 525 502 525 0.90 11 18 3.5e-05 0.0032 18.3 0.6 1 23 528 550 528 550 0.98 12 18 0.044 4 8.5 0.1 2 23 561 583 561 583 0.95 13 18 0.00062 0.057 14.3 3.2 2 23 587 608 586 608 0.96 14 18 6.9e-06 0.00063 20.5 0.8 1 23 614 636 614 636 0.98 15 18 7.1e-07 6.5e-05 23.6 4.8 1 23 642 664 642 664 0.99 16 18 0.00047 0.043 14.7 0.7 1 23 670 692 670 692 0.98 17 18 2e-05 0.0018 19.1 2.4 1 23 698 720 698 720 0.98 18 18 4.1 3.7e+02 2.3 0.3 1 20 755 774 755 776 0.93
Sequence Information
- Coding Sequence
- ATGGTGAAACTGTCTGATATCCTTTTGAAGAGTCAGAGCATTTGCAGGACTTGCCTTTCGGTAAAAGATGTATCAAATCTATTTAAAGCAACATGCGGCGGGGTTAGTGTTGTTCAAATGTTGGAACAGTGCACTTTTCATAAGgCTGAAGAAAACGATGGATTGCCCAAAAACATTTGCTTGTCTTGCATAGCGATACTTTATCAAACTTACAGCTTCCTTAATATGTGTAATAAGTCCTTGGAGACTTTGTACGATGTTCAGGTGATGTACAAAACCAAGCTGAAAAGCGACCACAGTTATGCGAAACATCCCATAGAATTAATCGATGTGGAAATTGATACTGCAGCGGAAAGTGTGCGAAATACCCAGTTAAGTGTTGTAAACACAGTGCCTAGTACACAATCCACTGATGGAGAAGGCGAGGCGAAACCTTTAAAAGACGATGTAATTTCCTTGGATGTGACTCTAGATTCAGGCGAAGAAAAACCAGCTGTTTCTCCGTTTAATTCCTCACCGTTTAATCCTTCGTTTGCTAAAAACCTAACGCAACTTATTAGTTCTTATATAAGCAAGCCCCGCGAGAATATTTGTCCAATTTGCGATCAAACTAAAGGGAGGAATGTTACACGTCATATAAGACAACACATGgtaattttgaaactgaaTCGTTGCTATAAATGTAAAGTTAGTTTCGATACGTTAGAAGAACTTCGAGAGCATTGCAAGCAGGAGACGCACCTTAACAAAACCTGCgatatttgtacaaaaacaTTCCAGTCGTTGCGCGCTTACGTAAAGCATATGGAAGTACACAAAGCCCTTTCGGCGAATAAACAGGAAATTAACATCAAACGGAAAGTGCGAAAACGAGTCTATACTTGCAGATTTTGCAATCTTAGCACCGAATCTTTCAAAAGCATTTTCTCGCATTATCAGGACGAGCACCAGTATTCAACTTCGTGCATTATTTGCAAGAAAGTGTACACGTCGGTGAAGTTTGTCCAGTACCACATGAGAAGTCACAATCCGAACTTCTTCCAATGCTACCAGTGCAAAATTACTTTCAATAGTAAAGACGAATTACTGCGTCATAGGATGTCAGATGACCACAAAAATCGCAATCGCTGCACTATTTGCGAGAAGACTTTTCGTTCCTACAATACTCTGCAGGAGCATGCCGTGATCCATACCCAGGAGAAGCGCTACCAGTGTGATGAATGCGGCAAGACGTTCATTTATGTGAATAATTTGAATAGGCATAAGAGAGTGCACGCTGGTCTGAGGTTCCAATgtgatatttgtaaaaaaacCTTCACTACAAAACACATCATGAAGCTTCACCAGTGGAAACTCCACGAAAAAATAATGACTGAAGCCTCGCCAATTACCGTGAAAGAGGCAAAAATTCCCAATGCTCACATGTGCGAAATCTGTGGGTTTATTTCAAGAACCTTGCGCGCCAAAACTCTGCACGAAGCAAAACACAAATTCAATCACCAAGTAATTTGTTCCAAGTGCCCAAAAACCTTCCCTGGAAAAGCAGAGTTAAACAAGCACGTCGATGAAGACCACGAAAAGTTCGAATGCACCGAATGCGGtaagaaatttttggaaaagtcCCTACTGAAAGTACATCTAAAAATCCACAAGTGGAACGAAGGAGAAGCCGTGCCGAATGTTTGTCGATTATGTCCGTCTGTTTTTGAGAACACCTCGGAGTTTATAGAACATGTCAATAAAGTTCACTGCATTTGGCCGTGTGAACACTGTGATAGATGCTTCAACTTCAAATCGGAGGTTGAGTCGCATCGTGCGAAACACACAGGGAACTACAAGTTCGTCTGCAAATACTGCGGAAAAGGTTTCATCTATTCGCAATACTTGAAAGTCCATGAAAACATGCACACAGACACCAGGCCCTTTAAATGCGAAATCTGCCATAAAGCTTTTAGGCAAAGACCGCATTTGCGCTCGCATATGAACATGCACACCGGAGACAAGCCTTATGTCTGCAGGTACTGCCAGAAGGCCTTCGCCCATGGAACCACGTTGGTTATCCATGAAAGAATCCACACTGGGGAAAGACCTTATGTTTGTAGTGTGTGCCAGAAAgggttttcacattcctctACTATGAAAAAACATGAACGGGGACACTTCCGACTGGGGACGAAGATTCGCATGAGAGATGTGGCTGAATATGAGGAAGAACAGGAGGAGGTCGGGGAGGAGGAGGTTGGGGAGGACGAAGAAGTTTTGTACGAGTGCAGAGCCTGTCGGGGGCAATTTACACAAATTGCAGAGTTGCAGGAACATGAATGTCAAGACTACGAGGAATCTGTTGAAGACGAAGGTGAAACTGAGGCAGGTGACGTTAAAATGGAGGGGGAGAAACCTGACATGTCAGGCGAAGAAGTAGCTTACTATTATTAA
- Protein Sequence
- MVKLSDILLKSQSICRTCLSVKDVSNLFKATCGGVSVVQMLEQCTFHKAEENDGLPKNICLSCIAILYQTYSFLNMCNKSLETLYDVQVMYKTKLKSDHSYAKHPIELIDVEIDTAAESVRNTQLSVVNTVPSTQSTDGEGEAKPLKDDVISLDVTLDSGEEKPAVSPFNSSPFNPSFAKNLTQLISSYISKPRENICPICDQTKGRNVTRHIRQHMVILKLNRCYKCKVSFDTLEELREHCKQETHLNKTCDICTKTFQSLRAYVKHMEVHKALSANKQEINIKRKVRKRVYTCRFCNLSTESFKSIFSHYQDEHQYSTSCIICKKVYTSVKFVQYHMRSHNPNFFQCYQCKITFNSKDELLRHRMSDDHKNRNRCTICEKTFRSYNTLQEHAVIHTQEKRYQCDECGKTFIYVNNLNRHKRVHAGLRFQCDICKKTFTTKHIMKLHQWKLHEKIMTEASPITVKEAKIPNAHMCEICGFISRTLRAKTLHEAKHKFNHQVICSKCPKTFPGKAELNKHVDEDHEKFECTECGKKFLEKSLLKVHLKIHKWNEGEAVPNVCRLCPSVFENTSEFIEHVNKVHCIWPCEHCDRCFNFKSEVESHRAKHTGNYKFVCKYCGKGFIYSQYLKVHENMHTDTRPFKCEICHKAFRQRPHLRSHMNMHTGDKPYVCRYCQKAFAHGTTLVIHERIHTGERPYVCSVCQKGFSHSSTMKKHERGHFRLGTKIRMRDVAEYEEEQEEVGEEEVGEDEEVLYECRACRGQFTQIAELQEHECQDYEESVEDEGETEAGDVKMEGEKPDMSGEEVAYYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -