Basic Information

Insect: Pediacus dermestoides
Gene Symbol: -
Assembly: GCA_963942485.1
Location: OZ012632.1:4278196-4279951[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00092 0.084 13.8 0.2 2 23 63 84 62 84 0.96

2 15 1.6 1.4e+02 3.6 2.1 2 23 89 110 88 110 0.91

3 15 0.00015 0.014 16.3 0.1 2 23 117 140 116 140 0.94

4 15 3.2e-05 0.0029 18.4 0.2 1 23 146 168 146 168 0.95

5 15 2.8e-06 0.00025 21.7 0.2 1 23 174 197 174 197 0.98

6 15 4.6e-05 0.0042 17.9 2.0 1 23 203 225 203 225 0.97

7 15 0.00072 0.066 14.1 0.4 2 23 232 253 231 253 0.97

8 15 0.024 2.2 9.3 0.5 3 23 287 307 286 307 0.97

9 15 1.8e-05 0.0016 19.2 2.8 1 23 316 338 316 338 0.98

10 15 4.8e-07 4.4e-05 24.1 0.8 1 23 345 367 345 367 0.98

11 15 2.5e-06 0.00023 21.9 0.9 1 20 373 392 373 395 0.94

12 15 3.3e-05 0.003 18.3 2.2 1 23 401 423 401 423 0.98

13 15 1.5e-06 0.00014 22.6 2.6 1 23 429 451 429 451 0.98

14 15 0.25 23 6.2 2.2 2 19 485 502 484 506 0.91

15 15 0.025 2.3 9.3 0.8 2 23 512 533 511 533 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00092	0.084	13.8	0.2	2	23	63	84	62	84	0.96
2	15	1.6	1.4e+02	3.6	2.1	2	23	89	110	88	110	0.91
3	15	0.00015	0.014	16.3	0.1	2	23	117	140	116	140	0.94
4	15	3.2e-05	0.0029	18.4	0.2	1	23	146	168	146	168	0.95
5	15	2.8e-06	0.00025	21.7	0.2	1	23	174	197	174	197	0.98
6	15	4.6e-05	0.0042	17.9	2.0	1	23	203	225	203	225	0.97
7	15	0.00072	0.066	14.1	0.4	2	23	232	253	231	253	0.97
8	15	0.024	2.2	9.3	0.5	3	23	287	307	286	307	0.97
9	15	1.8e-05	0.0016	19.2	2.8	1	23	316	338	316	338	0.98
10	15	4.8e-07	4.4e-05	24.1	0.8	1	23	345	367	345	367	0.98
11	15	2.5e-06	0.00023	21.9	0.9	1	20	373	392	373	395	0.94
12	15	3.3e-05	0.003	18.3	2.2	1	23	401	423	401	423	0.98
13	15	1.5e-06	0.00014	22.6	2.6	1	23	429	451	429	451	0.98
14	15	0.25	23	6.2	2.2	2	19	485	502	484	506	0.91
15	15	0.025	2.3	9.3	0.8	2	23	512	533	511	533	0.95

Sequence Information

Coding Sequence: ATGAATGATCCCAACGTGTTTTGCCCCCCACATACCTCGACTGCTTTTTGCATCAAACAAGAAGAACCAGAAGAATGGCCGGATGGTGTTGGAGATGAAGATCTACATGACGACGACGATGACGATGTTTTTCCAGAGAACAAAGTAAAAGTGGAGCTGCTCGAGCCCGGTCCGGATGATATTGTAGAGTGCACTACATGCGAAGTGAAATTCGTCAATAGTTACGAGCTGAAAATTCACAATATGATCCATTCGGGGGACCACAACTGTATCATCTGTAAGGAGTATGTAAAGAACAAGTTTCAGTTTATTGGACATGTGAGGAAGCATATGTGTGCCAAACCGTTTTTATGCCCGGAGCCCGAGTGTGATAAGACGTTTCCAAATGCGAGGGAGACGAAGTTGCACCAGAGGGTGCACAGTGATGAGAGGCCGTATATGTGTACGGAATGTGGGAAGGCTTTTAAGCAGATTAACACGTTAAAGGATCATGAGGTGGTGCATACAGGAATCAAGAGATACAAGTGCAAGATTTGCGAGGGGGCGTTCGCCACAGCTACTAGTCTTCGCCGACATATCCGCGTCATGCACGAAACAGTCCGCTCGTACAAGTGTCACTTTTGCGAAGAAAACTTCACCAGCAAGCAAGCTTTAAAGCAACACGTAGCCATCCACAAAGACATCGATCCGTTAAAATGCCAGTTGTGCGGGGAGAAATTAACCGATGAGGAAGAGTTCACTAGACATAAAAACATCCACATAGACCTGAAGCAGTCGGGCTATTGCGAGTATTGTGCAAACAGTACGTTTTATTTCGGTTTGAAGGATCATATAGAAAAAATGCACAAAGCACGCAATTGTGAGATATGTAGCTTGGTTTTTTATGACGATAAATCAATGGATAATCATCGAAGAAGTCATTTGGAAGAGGAGGCTAAGGAGGAGTATGTCTGTCATATTTGTAGCAAACAGTTTGAGTTTCCTAGATATTTAAAAGCGCATTTGAAGCGCCACGATGATAACTACAAGAAATTCAAGTGTGATCTATGCGATAAAACTTTCAGCTCTCGCAGAGATCTCAACGATCATCTCCTGGTGCACGCTGatgtaaaaaactacaaatgcAAAATCTGCGACAAGGCCTTCCGGACTAAACAAAGCGTCAACAAACACATGCCTATACATTCCGACAAGCGCCCGTTTCAATGTAAATTGTGCCCGAAGCGCTTCAAGAAACAATCAATTTTGCGAAAGCATCTGATCTCCCATTCGCGCATTCGTCCCTATAAATGTGAAATGTGCGACAAGTCCTACAAATCTAAGGAATCGCTGCGGGTTCACCGGTTCACTCACAGAAAAAGCAAATATGAGTGTAAAGGATGTGCGGTCagcttttacttttttacggTTTATAGGAAGCATAAGTGTTTTGCGGCGGATGCTAAGAGGAAAAAATGCAGAATTTGCAGGCGGGTTTTCATCAGGACTGGGACTTACACGTTGCATTGTCTTGGACATGAGAAAAGTGGCAGTAAGTGTGAGATTTGCGGTGTGAAGTTCAGGTATGATTACAGTCGGAGGTTGCATGAGTTGAGGCATAAGCACGGCGTGAAGACTGAAAGGGAGGTTGAGATTAAGCCTCTTGCAGGGCATTTTGTCAGTGTTAAGTGTGAACCTGTTGAAAACGAGGTTTTAAATTAG
Protein Sequence: MNDPNVFCPPHTSTAFCIKQEEPEEWPDGVGDEDLHDDDDDDVFPENKVKVELLEPGPDDIVECTTCEVKFVNSYELKIHNMIHSGDHNCIICKEYVKNKFQFIGHVRKHMCAKPFLCPEPECDKTFPNARETKLHQRVHSDERPYMCTECGKAFKQINTLKDHEVVHTGIKRYKCKICEGAFATATSLRRHIRVMHETVRSYKCHFCEENFTSKQALKQHVAIHKDIDPLKCQLCGEKLTDEEEFTRHKNIHIDLKQSGYCEYCANSTFYFGLKDHIEKMHKARNCEICSLVFYDDKSMDNHRRSHLEEEAKEEYVCHICSKQFEFPRYLKAHLKRHDDNYKKFKCDLCDKTFSSRRDLNDHLLVHADVKNYKCKICDKAFRTKQSVNKHMPIHSDKRPFQCKLCPKRFKKQSILRKHLISHSRIRPYKCEMCDKSYKSKESLRVHRFTHRKSKYECKGCAVSFYFFTVYRKHKCFAADAKRKKCRICRRVFIRTGTYTLHCLGHEKSGSKCEICGVKFRYDYSRRLHELRHKHGVKTEREVEIKPLAGHFVSVKCEPVENEVLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -