Pder012307.1
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- Znf711
- Assembly
- GCA_963942485.1
- Location
- OZ012627.1:30695942-30698987[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00097 0.089 13.7 1.2 2 23 156 177 155 177 0.97 2 16 0.00031 0.028 15.3 8.9 1 23 182 205 182 205 0.98 3 16 4.6e-05 0.0042 17.9 4.1 1 23 211 233 211 233 0.97 4 16 0.0081 0.74 10.8 1.1 1 19 239 257 239 258 0.93 5 16 6.7e-06 0.00062 20.5 1.1 1 23 267 289 267 289 0.97 6 16 0.00052 0.048 14.6 0.3 1 23 506 529 506 529 0.95 7 16 4.1e-07 3.8e-05 24.3 3.5 1 23 535 557 535 557 0.98 8 16 1.7e-05 0.0016 19.2 4.1 1 23 563 585 563 585 0.98 9 16 0.00034 0.031 15.2 1.2 1 23 594 617 594 617 0.92 10 16 0.0056 0.51 11.3 0.7 1 23 629 651 629 651 0.94 11 16 0.00016 0.015 16.2 6.3 1 23 657 679 657 679 0.98 12 16 1.8e-06 0.00016 22.3 0.5 1 23 686 708 686 708 0.96 13 16 2.3e-06 0.00021 22.0 1.2 1 23 714 736 714 736 0.98 14 16 3.4e-07 3.1e-05 24.6 0.9 3 23 744 764 742 764 0.96 15 16 7.8e-05 0.0072 17.2 0.5 1 23 770 792 770 792 0.98 16 16 0.19 18 6.5 0.6 1 23 797 820 797 820 0.94
Sequence Information
- Coding Sequence
- ATGGATGTTTCCCAGTTGAATTTAAACGGAATATGTCGCACATGTAAATGTGTAACACCACAAATGTTATCTGTTTTTGAAACCTATGAAAATGCCAACCAAAATCCCCGCATTGACGAGATGCTAATGGCCTGTGCCTCAATACAGGTATCGAATGGAGACGGTTTACCATCGCAAATATGCTCAATGTGCGTGGAACAATTAAAAAGTGCGTATTCCTTCAAAAGACAATGCGAAACAATAGACGCAAATTTAAGAGAACacgcaaaaaatttaaaggtgAATGAAATTAAACAGGAACTGCAAAATACAGAGTTTATAGATTCATTGAATATGATGATTCCCACAACTGAACCACAAGTGGAGGGGCTTCCAGCACAACCCGAGTCCGAGCCCCGAGTTGAGTACGCTGCGCAAACCCAATCAGACTTTATCCAAATCATGGAAAACAATCAAATGTTACTAACTTGCCATGAATGCATGAAAGTGTTTACTACATTGGAAGGCTTACGGGGACATAAACGCGTTCACTTGGGCCCCATGTACAAATGCAACCATTGTGACAAGAGATATACTCGCATGAACCACTTGCACCGGCACTATGCCACTATGCACAGCCAAAGAAAAGTCCACGTTTGTAGAATTTGCAACAAAACCCTTACAAGACTGGAGCATTTGAAAAGACATCTGATAACTCATTTGAAAGAAAAGCCATTTTTGTGCTCAACTTGCAACCGGGGGTTTAATCGAATCGAGCATTTAACAAATCACACACCAAAATGTAAAGGCGAGTACGTCCATGTTTGTAACGTTTGCAATAGAGCGTTTAATCGAGAAGACAGTTTGCAAGTTCACCAGAAACTCCACGATAACAGCCAACCAGTTCTGCCAACATTAGACAATTTAGACAACATCGAAGAGCACTACTATGAGATAGATATTGAGGCTAACGAAACCACCAATGTGTTTTCAGACAATTCGGATGTGGAGGATTGCTTAGACCCACCGGATGATCCAATTGATAATGTTCCGGAAAATTTAAACGAAACCGAAACGGAGGAAGGCGAAATAATTTCTACTATGGATAATTCCTTGGAGGCTGAGGAGCCGCCGAATGACTTATCTATGCCTTCTTTGGAAGTTGAGGAGGGTGAAATTGAGAGAGGTGTTGAAATGAAAATGGAGATAGGAGAGGATGATTTTATTCCTTCGAATGGGGATTTGGAGGAACCAGATATGGGAAATGATGGTAAGATTGCTTTCAGTTTTAATAAGAGCATCATGTATCATTACAAACGTAACATTCCGAAATTTCTTGTTCCAGGTATGGATGATAATTGTTCAGACAGTGACATGTCCGAATATATCCCCCAGCCGAAAATCAAACGTGGCCGAGGTAGACCCCGCAAGCACCCAATTGGTGCATCCCCCAAAACGAAAGGCAAGAAATCCCGTGGCCGCCTTCAAGCCAGACGCGTCAAATCGGATCCATTGGAAGAGGAAGAAATTGGCTTGTTTCTTTGTCCGATTTGCTCGGAGGAATTCAACAAAATGAGTCAGCTGGACCGACATGCACGTAAAATTCACAAAGGACTGAAAGTGCACAAATGTGCAGACTGTGGAAAAGACTTTAGTAGAGCTAATCATTTGAAACGACATATGGTAACGCATTCATCGGACAAACCGTTTAAATGCGAGGCGTGTCATAAGAGTTTCTCACGGAATGATCATCTGGCTCAACATGTCAAGTTACATGAGCGGCAGCAGTCCAGTCCTCAGTTTCGTTGCGAGGTTTGTCAGAAGGATTTCAATAGGGAAGTGCATTTGGCCAAACATAATGCTATTAAACATGGAATTGGTGACAAGttgttggttttgaaaaagtttgaaTGTCCgatttgcttcaaaaatttcaCAACGGAAAAGTACAGGGATGTCCACGTGAAAGGGCACAACGGAGAAAAACAGTACAAATGTAAAACTTGTCAGAAGAGTTTCCTATCTAAATCACATCTTACTGAACATATGAAGTTTCATAACGACCACTCAAAGAAGTTTCTATGTTCGGAATGTGGTCAAAGATTCATTCGTAATGATTATCTTGTTATTCATATGCGTCGCCATCGAGGGGAAAAACCGTTTAAGTGTAAATATTGCGGCAAAGGTTTTCCACGAACCACTGACTTGACTGTACATGAACGGTACCACACTGGTGAGAAAACTCATCTATGTACAATTTGCGGAAGAGGTTTTGGAAGAGCATACAACTTAACTGTCCACATGCGGACTCACACGGGAGAAAAACCGTATCATTGTACATACTGTGATGCAGCCTTCGCCCAAGGAAACGACCTGAAGGCACACGTGCGAAGACACACTGGTGAGAGGTTCCAATGTGAATTGTGCAGCGAAAGTTTTCTCATGGGTTACATGTTGACCCAGCATAAAAGAAACGCACATGGTTTGAACGTGGTAAGTAACATTCGAAGATTGAAACCAGTTAACAAAATGGAGAATCCAGATGAGCCACCTCCATTAGAGATTCCTTTGCCTAAGCCTGTGGTGCCTGAAGCTATGTTTAATTCGTTGCATGCCCAGTTACAAGCGGCGCAGTTTCAGTTTAAAGCGGAatga
- Protein Sequence
- MDVSQLNLNGICRTCKCVTPQMLSVFETYENANQNPRIDEMLMACASIQVSNGDGLPSQICSMCVEQLKSAYSFKRQCETIDANLREHAKNLKVNEIKQELQNTEFIDSLNMMIPTTEPQVEGLPAQPESEPRVEYAAQTQSDFIQIMENNQMLLTCHECMKVFTTLEGLRGHKRVHLGPMYKCNHCDKRYTRMNHLHRHYATMHSQRKVHVCRICNKTLTRLEHLKRHLITHLKEKPFLCSTCNRGFNRIEHLTNHTPKCKGEYVHVCNVCNRAFNREDSLQVHQKLHDNSQPVLPTLDNLDNIEEHYYEIDIEANETTNVFSDNSDVEDCLDPPDDPIDNVPENLNETETEEGEIISTMDNSLEAEEPPNDLSMPSLEVEEGEIERGVEMKMEIGEDDFIPSNGDLEEPDMGNDGKIAFSFNKSIMYHYKRNIPKFLVPGMDDNCSDSDMSEYIPQPKIKRGRGRPRKHPIGASPKTKGKKSRGRLQARRVKSDPLEEEEIGLFLCPICSEEFNKMSQLDRHARKIHKGLKVHKCADCGKDFSRANHLKRHMVTHSSDKPFKCEACHKSFSRNDHLAQHVKLHERQQSSPQFRCEVCQKDFNREVHLAKHNAIKHGIGDKLLVLKKFECPICFKNFTTEKYRDVHVKGHNGEKQYKCKTCQKSFLSKSHLTEHMKFHNDHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYHCTYCDAAFAQGNDLKAHVRRHTGERFQCELCSESFLMGYMLTQHKRNAHGLNVVSNIRRLKPVNKMENPDEPPPLEIPLPKPVVPEAMFNSLHAQLQAAQFQFKAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -