Basic Information

Insect: Pediacus dermestoides
Gene Symbol: -
Assembly: GCA_963942485.1
Location: OZ012627.1:22586315-22589869[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.7e-06 0.00034 21.3 0.1 1 23 139 161 139 161 0.98

2 12 9.8e-05 0.0089 16.9 0.6 1 23 167 189 167 189 0.98

3 12 7.9e-06 0.00072 20.3 2.3 1 23 195 217 195 217 0.98

4 12 0.0021 0.19 12.7 1.1 3 23 231 251 229 251 0.95

5 12 1e-05 0.00093 20.0 0.3 2 23 258 279 257 279 0.97

6 12 2.6e-07 2.4e-05 25.0 2.1 1 23 285 307 285 307 0.99

7 12 7e-06 0.00064 20.5 0.2 1 23 313 335 313 335 0.96

8 12 1.9e-06 0.00017 22.3 0.1 1 23 341 363 341 363 0.98

9 12 5.3e-08 4.9e-06 27.1 2.2 1 23 369 391 369 391 0.99

10 12 1e-06 9.5e-05 23.1 2.8 1 23 397 419 397 419 0.98

11 12 2e-06 0.00018 22.2 0.4 1 23 425 447 425 447 0.97

12 12 1.8e-05 0.0016 19.2 1.5 1 23 453 475 453 475 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.7e-06	0.00034	21.3	0.1	1	23	139	161	139	161	0.98
2	12	9.8e-05	0.0089	16.9	0.6	1	23	167	189	167	189	0.98
3	12	7.9e-06	0.00072	20.3	2.3	1	23	195	217	195	217	0.98
4	12	0.0021	0.19	12.7	1.1	3	23	231	251	229	251	0.95
5	12	1e-05	0.00093	20.0	0.3	2	23	258	279	257	279	0.97
6	12	2.6e-07	2.4e-05	25.0	2.1	1	23	285	307	285	307	0.99
7	12	7e-06	0.00064	20.5	0.2	1	23	313	335	313	335	0.96
8	12	1.9e-06	0.00017	22.3	0.1	1	23	341	363	341	363	0.98
9	12	5.3e-08	4.9e-06	27.1	2.2	1	23	369	391	369	391	0.99
10	12	1e-06	9.5e-05	23.1	2.8	1	23	397	419	397	419	0.98
11	12	2e-06	0.00018	22.2	0.4	1	23	425	447	425	447	0.97
12	12	1.8e-05	0.0016	19.2	1.5	1	23	453	475	453	475	0.97

Sequence Information

Coding Sequence: ATGCCTATTGCCGAAGACGATGGTTTTCCAAGCCTCATGTGCGTCCAATGTGTTTTGCAATGCAGTCGCGCATACACTTTTAAACAACAATGCGAAAAATCCGACACTATTTTGCGACACTATCTTTCTCCGGAATTTCAGGTCCAAATGGCTCAAACTTTGTCCGACCAGCAAACCAAACAAGAACTACAAGAACAACTGCAATTCAGCGACACCATGGCAAATGTGGTCATTCAAGAAAGCATAACCGCGGAATTTGTCTCATACAACGACGACGGTGAGCTCGAAGTTAAAGAGTACGAAATACAACAAACCACAGTGAACCCTATAGACCAAGACGACAACGTTAAAATCGAAATCCAAACCGCAGAAGCAACAGGTCCCTCAACAGCCAACGCtgacacaaaactaaaatatccATGCCCGAAATGCGATGAATCCTTCAATCTTAAAGTCGACCTCAAAGTGCACCTCATGAGCCATCCCAAAGATTTACTATACGTTTGTCATGTCTGCAATAAGGCCTTCGCCGAAGCCAGGATCCTCAAACGCCACTTGAAAATTCACATGGATAAAAAACCGCATCAGTGCGATGTGTGCGATATGTCGTTTGCTGAAAGCTCGAATTTGAGTAAACACAAAAAGAAGCACACTGGTGAGTTGAGGAATATTAAAGGAAAACCGCATTTGTGCTCGGTTTGTGGTAGTGCTTTTAAATGGGCGTCGAGTTTGTCGAAACATATGAAATATCACACTGGGCACAAGTTGCTGTCTTGCAATTATTGTGGTAAGCAGTACGTCGAGGCGAGGAGTTTGAGGATTCACATACGGTCGCACACAGGGGAAAGACCGTATGTTTGTGACGTATGTCAGAAGAGCTTCACACAGCTTTGTAATTTGGAGAAACATCTGCGGGTTCATACTGGAGAAAAGCCGTTTTTGTGTCCTATCTGCAATAAAGGATTTACCCAATCAGGATATGTGGGTATCCACATGCGAACTCACACAGGTGTTCGACCCTACGTATGCCAAACCTGCGGAAAAGCCTTTGCAGGTTCCAATACATTGACGATTCACCAGCGAATACACACGGGAGAAAAACCGTACACTTGCAATATCTGTGGTAAATCTTTCAGCCGACACGAAACGTTAATCAACCACACTAGAATCCACACTGGCGACAAACCCCACGTTTGTAATGTGTGTAACAAAGGCTTCACTTCGTCTGGACATTTATCGGGACACATGCGGACCCACACTGGGGAAAAACCACACGTTTGTGCCCTTTGTGGGAAAAAGTTTGCCGGTTCTAGTAGTTTGAAGGTTCATTTGCGGATTCATGTTGGGGAAAAACCGTACACTTGCCAAATTTGCAGTAAAACGTTTACGCAAGCTCAAACGTATCAACAGCATTTGGTTTCCCATACCATCGACATCAAAGCTGAATTGCCAAAGCTTGAAACAGTAACCGTGGCGGAGATAATaacaaCGGATAATCATCAAACGCTACAAGTGCAGACTTTGAGTcctaaaaaggaaaaatggttttctACTGATAATAATCAATAG
Protein Sequence: MPIAEDDGFPSLMCVQCVLQCSRAYTFKQQCEKSDTILRHYLSPEFQVQMAQTLSDQQTKQELQEQLQFSDTMANVVIQESITAEFVSYNDDGELEVKEYEIQQTTVNPIDQDDNVKIEIQTAEATGPSTANADTKLKYPCPKCDESFNLKVDLKVHLMSHPKDLLYVCHVCNKAFAEARILKRHLKIHMDKKPHQCDVCDMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGSAFKWASSLSKHMKYHTGHKLLSCNYCGKQYVEARSLRIHIRSHTGERPYVCDVCQKSFTQLCNLEKHLRVHTGEKPFLCPICNKGFTQSGYVGIHMRTHTGVRPYVCQTCGKAFAGSNTLTIHQRIHTGEKPYTCNICGKSFSRHETLINHTRIHTGDKPHVCNVCNKGFTSSGHLSGHMRTHTGEKPHVCALCGKKFAGSSSLKVHLRIHVGEKPYTCQICSKTFTQAQTYQQHLVSHTIDIKAELPKLETVTVAEIITTDNHQTLQVQTLSPKKEKWFSTDNNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -