Pder017085.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pediacus dermestoides
Gene Symbol
-
Assembly
GCA_963942485.1
Location
OZ012630.1:6933474-6941430[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 46 3 2.7e+02 2.7 1.8 1 23 56 77 56 77 0.92
2 46 0.0023 0.21 12.6 0.1 1 23 80 102 80 102 0.97
3 46 9.5 8.7e+02 1.2 3.3 1 23 133 155 133 155 0.97
4 46 0.23 21 6.3 3.8 1 23 161 183 161 183 0.94
5 46 0.0011 0.1 13.5 0.9 1 23 189 212 189 212 0.97
6 46 3.3e-05 0.003 18.3 2.1 1 23 223 246 223 246 0.96
7 46 7.1e-05 0.0065 17.3 0.3 2 23 255 276 254 276 0.97
8 46 0.0074 0.68 10.9 1.4 1 23 283 305 283 305 0.95
9 46 0.00051 0.046 14.6 1.2 1 23 311 333 311 333 0.98
10 46 5.9e-07 5.4e-05 23.8 0.6 1 23 339 361 339 361 0.99
11 46 0.00089 0.081 13.8 0.1 3 23 396 416 394 416 0.94
12 46 0.028 2.6 9.1 0.3 1 23 421 444 421 444 0.95
13 46 0.023 2.1 9.4 0.3 1 23 486 508 486 508 0.91
14 46 0.092 8.4 7.5 0.7 3 23 517 538 515 538 0.95
15 46 0.0092 0.84 10.7 4.3 1 23 544 566 544 566 0.97
16 46 2.3 2.1e+02 3.1 0.8 2 23 571 593 570 593 0.90
17 46 1.7 1.5e+02 3.6 3.6 1 23 601 624 601 624 0.84
18 46 0.00026 0.023 15.5 0.4 3 23 631 651 630 651 0.99
19 46 0.024 2.2 9.3 2.1 2 23 658 679 657 679 0.95
20 46 1.3e-06 0.00012 22.8 0.5 1 23 685 707 685 707 0.98
21 46 0.053 4.9 8.3 1.3 1 22 713 734 713 734 0.95
22 46 0.49 44 5.2 0.4 2 23 754 776 753 776 0.90
23 46 0.017 1.6 9.8 1.3 1 23 787 809 787 809 0.97
24 46 0.24 22 6.2 3.8 2 23 848 870 847 870 0.95
25 46 0.037 3.4 8.8 1.7 2 23 877 898 876 898 0.96
26 46 1.8 1.7e+02 3.4 0.1 2 23 904 926 903 926 0.94
27 46 0.0052 0.47 11.4 1.3 1 23 934 959 934 959 0.97
28 46 0.021 1.9 9.5 0.5 3 23 969 989 967 989 0.96
29 46 0.91 83 4.4 2.7 1 23 1042 1065 1042 1065 0.93
30 46 0.00044 0.04 14.8 1.1 1 23 1076 1098 1076 1098 0.97
31 46 0.64 59 4.9 0.3 1 23 1107 1129 1107 1129 0.92
32 46 0.064 5.8 8.0 2.5 2 23 1137 1159 1136 1159 0.96
33 46 0.0011 0.1 13.5 2.8 2 23 1166 1187 1165 1187 0.96
34 46 0.0062 0.57 11.2 0.1 2 23 1193 1215 1192 1215 0.96
35 46 0.13 12 7.0 2.4 1 23 1223 1247 1223 1248 0.96
36 46 1.1 98 4.2 0.4 2 23 1287 1310 1286 1310 0.85
37 46 0.0047 0.43 11.6 0.1 3 23 1314 1334 1313 1334 0.92
38 46 1.2 1.1e+02 4.0 0.1 2 23 1340 1362 1339 1362 0.90
39 46 0.19 18 6.5 0.4 1 23 1404 1426 1404 1426 0.93
40 46 1.5e-05 0.0013 19.5 4.1 1 23 1462 1484 1462 1484 0.99
41 46 0.29 26 5.9 0.1 2 23 1490 1512 1489 1512 0.93
42 46 0.0042 0.38 11.7 2.6 1 23 1519 1544 1519 1544 0.96
43 46 0.017 1.5 9.9 1.0 3 23 1554 1574 1552 1574 0.96
44 46 0.2 18 6.5 0.7 2 23 1581 1602 1580 1602 0.95
45 46 4.1e-05 0.0037 18.1 2.0 1 23 1608 1630 1608 1630 0.98
46 46 0.12 11 7.1 0.5 1 21 1636 1656 1636 1657 0.95

Sequence Information

Coding Sequence
ATGAACTGTTTAAGTATGCGTGAAGTTGAAGAACATCACAGGAACTTTCTAATTAAGGACCTGAAACTCGAAGTCGAAGAAGAAATTCTTATAACATTAGTGGATGAATCCGATGACGACGAAATCGATGACAGAACATTTAAACGCAAACACGAACTACAACGCTTCCTTTGTAATTTTTGCGGGGCCATGGTGCTATCCCACCAGTTAAACAAGCATCTTTACTCACATGGCATCTACAAATGTGGGGTTTGCTCTGTAGTCTACGACAACTCTGCTGACTTGGAGCAGCATAAAAACGAGCATAAAACCTCAGGTTACACTTGTAACTTCTGCCAGGATGTCTTGGGTACCGCTATAGATTACACCGTGCATACGTACTTGCATACTAGTAGCTATACGTGTCCTTTTTGCGAGTTCCACACGCAGATCAAACGCTCTATGGTGTATCATATAAAACGCCACGAAGGGTCGCATAATTTCCACTGTAAAATCTGCGGTAAAGGCTGCTTTTCACGTAGTAAAGCCTTGCAACACGAGGAAATGCATATGgatgttaaaaaatacaaatgcgAGTTCTGTGAGAAGAAATTTCCGTTAGAGCGGTACTTAATCGCGCATCAGAAGCTCAATCATAAGGTAGAGCTCTTCGGCGTGGATGAGCTCTTCAACTGCCACTATTGCGGcaagatttttaaatttgaaaaaagtttggtGCGCCATCTAAGCGTTATACACAACGTAGGACAAGATCGCAGTGTTAGATGCCAAATCTGCCAGAAGAAACTAGCAAATCCCTATAATCTAAAACTACATATGAGCGTACACACTAAAGACAAGAAGGTGTTCCTATGCCAGTTTTGTGGAAAAGGTTTCACTTTAGCCAAGTACCTTAAATTCCACATTAGATCCCATACTGGGAACAAGCAATTCCAATGTGAGTATTGTTCGGAGACATTTACGAAGAAGCAGGAGTTTGACGAGCATGTTCGAGGACACACCAAGGAAGGACCGTATGTGTGCGAGTATTGTGATAAGGAATTTTCGCAGAAGTCGAGGTTGGTTATTCATATTCGAAGTCACACGGGGGAGAAACCGTATGCTTGTCCTTTGTGCTTTGAAGGATTCGTCGGCAAGTTCAAACCCTTGTTCCGAAGACACTTTGATCCAGTCCCCAGCATAATCTGTAAAATCTGTGGGTTGCGTTTTATTACACGTGACCAACTCGACGAGCATAGAATTGAACATTTGGGTGAGGTGTTCGACTGTACTGTGTGTCACAAGGAGCTACCCTCGCCCGATAAACTAGACCTACATTTGATTCGTAGTCACACCGTACAAGCTAGAGAAGCTCAATCTGAGCATTTTTGTAAGATTTGTACTGAAAGCTTCCTCTCCCAAAACCGCTTAGTTGAACACTGTAAGACTCACTTAGATCACATGGATAATTTAGTGTTCACCTGCATTATTTGCGATAAGACCTTCAACGACCCTTACAAATATTCTATGCATGGTTTAGCACACGCTTGCGAGTCCAAAATGATGCACTGTGCCTTATGTAGTTTTGTCTCGAGTGACAACTCGAATATTCGCAACCATATTCTTCGAGTTCACTGGAGGAAATGCCTGCACAACTGTAAGATTTGTACGCGAGGGTTTCACagtaaaactaatttagaTTTACATCTTGAGACACATTTGGGACCCCTGGTTTGCGTTGTCTGTAAAAAGGAGCACCCTCATGAGAAGGCTTTGACTAGGCATCAAGTGCTAGCTCACAAAGTAACACCTACTACCCCCTATGAGTGTAAAGTGTGCCAAAAAATCTGCGCCTCCTCACAGAGTCTAAGCTGTCACAGTTTACGAGAGCACCAAACTTCATCGAATCTTTGCGAAATTTGTGGAAGTCAATTTACTAATAAGTACCTTTTGGTTATACACTATAGGAAGCACACTGGGGAAAAACCTATTAAGTGTAGGTTTTGTGATAAGAGCTTCACGAAGAAGGAATACAAAGATATGCATGAGAGAGTGCACACAGGCGAGAAGCCATTTGTTTGTACAGATTGCAATAAAGCTTTTAATCAGGCTACTAGTTTAAGGGCACATAAGAGGATTCATACTGGTGAAAAGCCTTACAAGTGTCAGTTTTGCAATATGGGGTTTATTTCATCGAATGCCAGGCGACAACATCAGAAGAAGCCCTGTGTTGGAGACaAACTCGAAGAGCATAATATAGAGCATCTAGGCGAAGTCTTTGATTGTATAGTGTGCAATAAGGAGCTGCCTTCGCGTGATGACTTACACCTACATCTCATTCGTTACCATGCAGTTCAAACTAGAGAACCTCTAACTCAGTACTATTGCAAGTTGTGCTCTGAAGGGTTTaatcagaaaaataagttggaCTTACACAGTAAGATCCACTTGGATCAGTTAGGTAACCTCGAGTTTTCTTGTAAGATATGCAAGACGAAAATCAAGGGACTTATCAAGTTTTCAATTCATGGAATACAGCATAATGTTGGTTCTAATGTGATTCATTGTTCTTTCTGTAGTTACTGTACTACTACATATGAGAACATCAGTCAGCACATACGCTCGGTTCACATGAAAAAACGCCAGCTCAAATGTGAGACTTGTGGGGACCTCTTTTTCCGCAAAGGGAAATTCCAGAGGCACGTCAAGTCGCATTTGAACAATCCTTCAGTTTGCGTAGTCTGTAGAAAGTCGTACCTCGAATACAATGCGCTTGTAGCTCACCAAAAACGTGTCCACAAGGTCCCCATTCTTCCTTCTTATCAATGTAAAGTGAAAGACTGTCAGCGAGTTTATATCTCGTCGCGTTCTGTACGAAGGCACGAAATGCGGAAGCACCAACCTCATAAATTGATTAAGCATTTGTGTGAAGTGTGCGGAGTACAATTTGCATCACGTGAGATATTAACTGTGCACTACCGGAAGCATACAGGGGAAAAACCTATGAAGTGCAGGTATGACAACGAAGTGGAATCCAAATACCCAATACTCGACATAAAGTGGGAGCCCCTAGTTGATTCCATCCCAACTAACACCTGGAACTCAGAACTCGAAGAGCATAATATAGAGTATCAAGATGTAGTCTTCGAATGTATAGTGTGTAATAAGAAGCTGCCTTCGCGTGATTATTTACATCTACATCTCATTCGCTGCCATGTAGTTCAAACTAGAGAACATCCAACTGAGTACTCTTGCAAGTTGTGTGGTGAAGggtttaaaaagaaaagtaaGTTGGACTTACACTATACGATCCACTCAGATCAGCTGGATAATCTGGAGTTTACTTGTAAGATATGCAAGGCGGAAATAAAGGATCCTTACAAGTTTTCTCTGCATGGATTAGAGCATAACTTTGGTTCTGATGTGATCCATTGTCCTGTGTGTAGTTACTGTACTACTACATATCCGACCATGAGTCAGCACATACGCAGGATTCACACAAAAAAACTCCAGCTCGAATGTGAGACTTGTGGGAAACACTATAACCGCAAAGGGGCATACGAGAAGCACGTCCACTCGCATTTGAACAGTCCTTCAGTTTGCGTAGTCTGTAGCAAGTCGTACGACGAATTAAGTGCGCTTGTAGCGCACCAAAAACGGTCCCACAGGGTCCCCATTTATCCTTCCTATCAATGTACAATCAAAGACTGTCAGCGACTTTATTTCTCGTCGCAAACTCTAGAAATGCATGTAATGCGGCATCACCAACAAAGCATTTGTGTGAAGTGTACGAAGTATCACTACGAACTGGAATCCAAACACTCAATACTCGACATAAAATGGGAGCCCATAGTTGATTCCATCCCAAGTGGCACCTGGACTTGTACGATTTGCAACAAATTTTCCGCCCCCACAAAAACCCAAATCCAACGCCACATTAATCGGGcccacaagaaaatctgcaAAGTCTGTGGGTTACGATTCTACACCCGTGCAGAACTCGAAGAGCATAATATAGAGCATCTAGGTGAAGTCTTCGATTGTATAGTGTGCAATAAGGAGCTGCCTTCGCCTGATGACTTAGATCTACATCTCATTCGCTGCCATGTAGTTCAAACTAGAGAACATTCAACTGAGCACTTTTGCAAGTTGTGTTGTGAAGGATTTACACACCAAAAGCACTTGGGTAACCACAATAAGATCCACTTGGATCAGCTGGATAATCTGAAGTTTACTTGTAAGATATGCAAGGAGGAAATAAAGGATCCTTACAAGTTTTCTATGCATGGATTAGAGCATAACTTCGGTTCTAATGTGATCCATTGTTCTTTGTGTAGTTACTGTGCGACTGGTTACTGGAATATTCAACAGCACTTAGATAAAGTCCACATGAAGAAGCTACAATTCAAGTGTGAGACTTGTGGAAAGCGCTTTTATCGCAAAGGAAAATTCCAGCAGCACCTCAAGTCGCATTTGAATAAACCTTTAGTTTGCGTAGTATGCAACACTTCGTACCTCGACGAATCCGCCCTTCTTAAGCACCAAGTACGCAGTCACAAAGCACACATCCCAGATTATCAATGTAAAACCCAAAACTGCCAGCAAGTTTTTACCTCGTCGCAAGCTCTTCATATGCACATGGTAAGAAAGCATAGACCTagcgaaataaataaacatttgtgCGAAGTATGCGGAGCCCAATTTACATCTAACCAAATATTGACTGTACACTATCGGAAGCATACCGGGGAAAAACCGATGATGTGCAGGTTTTGTAATAAAGGTTTTGCTAAGGAGTCTTATAGGGTGATGCATGAGAGGATTCATACAGGGGAGAAACCGTTTTCTTGCACGTTTTGTGATAAGAGTTTTAATCAACTTGCTAGTTTACGTCTGCATAAGCGACTGCATACGGGGGAAAAACCGTATAAGTGTCAGTTTTGTAATGAGGGATTTATTTCGGGGAGTGCCAGAAGAACGCATCAGAAGCAACCTTGTATAGGGGATAGTGATTAA
Protein Sequence
MNCLSMREVEEHHRNFLIKDLKLEVEEEILITLVDESDDDEIDDRTFKRKHELQRFLCNFCGAMVLSHQLNKHLYSHGIYKCGVCSVVYDNSADLEQHKNEHKTSGYTCNFCQDVLGTAIDYTVHTYLHTSSYTCPFCEFHTQIKRSMVYHIKRHEGSHNFHCKICGKGCFSRSKALQHEEMHMDVKKYKCEFCEKKFPLERYLIAHQKLNHKVELFGVDELFNCHYCGKIFKFEKSLVRHLSVIHNVGQDRSVRCQICQKKLANPYNLKLHMSVHTKDKKVFLCQFCGKGFTLAKYLKFHIRSHTGNKQFQCEYCSETFTKKQEFDEHVRGHTKEGPYVCEYCDKEFSQKSRLVIHIRSHTGEKPYACPLCFEGFVGKFKPLFRRHFDPVPSIICKICGLRFITRDQLDEHRIEHLGEVFDCTVCHKELPSPDKLDLHLIRSHTVQAREAQSEHFCKICTESFLSQNRLVEHCKTHLDHMDNLVFTCIICDKTFNDPYKYSMHGLAHACESKMMHCALCSFVSSDNSNIRNHILRVHWRKCLHNCKICTRGFHSKTNLDLHLETHLGPLVCVVCKKEHPHEKALTRHQVLAHKVTPTTPYECKVCQKICASSQSLSCHSLREHQTSSNLCEICGSQFTNKYLLVIHYRKHTGEKPIKCRFCDKSFTKKEYKDMHERVHTGEKPFVCTDCNKAFNQATSLRAHKRIHTGEKPYKCQFCNMGFISSNARRQHQKKPCVGDKLEEHNIEHLGEVFDCIVCNKELPSRDDLHLHLIRYHAVQTREPLTQYYCKLCSEGFNQKNKLDLHSKIHLDQLGNLEFSCKICKTKIKGLIKFSIHGIQHNVGSNVIHCSFCSYCTTTYENISQHIRSVHMKKRQLKCETCGDLFFRKGKFQRHVKSHLNNPSVCVVCRKSYLEYNALVAHQKRVHKVPILPSYQCKVKDCQRVYISSRSVRRHEMRKHQPHKLIKHLCEVCGVQFASREILTVHYRKHTGEKPMKCRYDNEVESKYPILDIKWEPLVDSIPTNTWNSELEEHNIEYQDVVFECIVCNKKLPSRDYLHLHLIRCHVVQTREHPTEYSCKLCGEGFKKKSKLDLHYTIHSDQLDNLEFTCKICKAEIKDPYKFSLHGLEHNFGSDVIHCPVCSYCTTTYPTMSQHIRRIHTKKLQLECETCGKHYNRKGAYEKHVHSHLNSPSVCVVCSKSYDELSALVAHQKRSHRVPIYPSYQCTIKDCQRLYFSSQTLEMHVMRHHQQSICVKCTKYHYELESKHSILDIKWEPIVDSIPSGTWTCTICNKFSAPTKTQIQRHINRAHKKICKVCGLRFYTRAELEEHNIEHLGEVFDCIVCNKELPSPDDLDLHLIRCHVVQTREHSTEHFCKLCCEGFTHQKHLGNHNKIHLDQLDNLKFTCKICKEEIKDPYKFSMHGLEHNFGSNVIHCSLCSYCATGYWNIQQHLDKVHMKKLQFKCETCGKRFYRKGKFQQHLKSHLNKPLVCVVCNTSYLDESALLKHQVRSHKAHIPDYQCKTQNCQQVFTSSQALHMHMVRKHRPSEINKHLCEVCGAQFTSNQILTVHYRKHTGEKPMMCRFCNKGFAKESYRVMHERIHTGEKPFSCTFCDKSFNQLASLRLHKRLHTGEKPYKCQFCNEGFISGSARRTHQKQPCIGDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-