Pder001854.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pediacus dermestoides
Gene Symbol
-
Assembly
GCA_963942485.1
Location
OZ012625.1:4253491-4260023[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.1e-07 1e-05 26.1 1.1 1 23 300 322 300 322 0.99
2 12 2.5e-06 0.00023 21.9 7.2 1 23 328 350 328 350 0.98
3 12 3.7e-06 0.00034 21.4 0.8 1 23 356 378 356 378 0.99
4 12 0.044 4 8.5 2.2 1 23 384 406 384 406 0.91
5 12 0.00043 0.039 14.9 0.7 1 23 412 434 412 434 0.97
6 12 1.8e-08 1.7e-06 28.6 3.6 1 23 440 462 440 462 0.99
7 12 4.8e-06 0.00044 21.0 1.5 2 23 468 489 467 489 0.97
8 12 2.1e-06 0.00019 22.1 3.1 1 23 495 517 495 517 0.99
9 12 1.3e-06 0.00012 22.8 1.3 1 23 522 544 522 544 0.99
10 12 1.7e-06 0.00016 22.4 4.1 2 23 551 572 550 572 0.98
11 12 1.1e-08 1e-06 29.3 1.2 1 23 578 600 578 600 0.99
12 12 2.3e-06 0.00021 22.0 1.5 1 23 606 628 606 628 0.98

Sequence Information

Coding Sequence
ATGTCAACTCAAATAACATTTCAAATAAGAAGCAGTCCAAATGGACTTACCATGGAAAATACACTAAACGTAGCCGATTGTTGTCGAGTTTGCCTGAGAATAGACTGCACACTAACCCCTACAAGTAACGAAGATAAtgattcaattaaattttgtgacaAATTATTAGCCTGTGTATCAGAAATAGTATGGCTGAAAGAAGGTTTGCCTTCACTTATATGTGGTACATGCATAGACCGCCTTAGAATCGCCTACGAGTTCCGGAATGTGTGTCTTCATTCAGACCAAGCTTTGCAACGTTACATGAAAAACCTGGAGGATGATACGAAGACGTTTGGCTCGCGACCGTTGACAACCCCCACGAAATTCGAATTCGTTGTACCAACCACCATCCACGATGCCTTAAACCTGGGGGAAGAGCCACCAAACGCAGAGTATTTACATTTGAAACACTTTTTGGACAATGAAGAAATCTTGAAATCGGAGACTTTGGTAGATGCGGCTACGTCGAGGAGCACCAGCCCGGATTCTGCGTCTACTGGTTTTATCAACACTTCGaaccaacaacaacaacaacaacagcaGCATCAACAGCCAACGCCTGTATTACCACAAATGCAACAACAGCAAATTCACCAACAAATTCCTTCACCACATGAAAGTGCATCGCCCATGCAACATCAACCACAACAGATTCAAATCGTGCAATCTCCAACGACTACTCATCAAATCCATGTAGTTCAACAGCAGCAAGAACAGCCAATTCATTATGTTAAATCAACTAGTCCTACGATGCCTCCacgacaaattattaaaaggaCTACGGGTATTCAAGTAAGGCCCCCCACACCTCCTAGTAATAATATGACGGATACGGCGCAACAGGATTTTAAACCGTATACTTGTCAAGTTTGTGGTAGGAATTATAGGAAGAATGCGAATTTGAGGATACATATGAGGACACATACGGGGGAGAAGCCGTTTGAGTGTAAATATTGCGAGAAAAGATTTTATCATTCGTCCCATCTCCGTGAGCATATACGAAGACATACCGGAGAAAAACCATTCCAGTGTGCCGTCTGTAACAAACGCTTCACCATCAAAGGCGAACTAACAATGCACATGAAGAGCCACACAGGAGAAAAGCCGTACGCATGCGCCTGTTGCGACCGACGCTGTCTAACAGCCGCTGATCTTAAAGTCCACATGCGCACCCACACTGGTGAAAAACCATTTGCATGTTTAACTTGCGGCAAGAAATTCGCCAGCACCTATATTTTAAACTCTCATATTAAAACTCATACTGGAGAGCGGCCTTACAGCTGTACGATTTGTGAGAAGACTTTCACGCAATCATCGCATTTAAATGTACACATGCGCAAGCACACTGGTGAGAAAGTTAGCTGCAAAGTTTGCAATGCGCAGTTCACGCATTCGTCTCAGTTGACGGTGCACATGCGCGAGCACACTGGCAGGCAACCCTACAAATGCACCACTTGCGATAAAGTTTGCAACTACGCCTCTGAGTTGCAAACGCATATGATGAAGCACACTGGCGAGAAGTTTACTTGTGTTACTTGTGATAAGAAGTTCACTACTGCAGCGTATTTGCAGGAGCATACTCGGACTCACACCGGGGAAAATCTGTCGACTTGCACGATTTGCGATCGACAGTTCACTAGACATCAGTATTTAGAGAAGCATATGCGGACCCATACAGGGGAAAAGCCttacacttgttttatttgtGGTAAAAAGTTCACGCAGTCGTCTTCGCTTAAGGTACACATTCGTATTCACACTGGTGAGAAGCCGTATGAGTGTACAGTTTGTAATAGGAGGTTTACAACGTCGTCGGATCTGTCGGCTCATAACAAGAAACATAAAAAgtatattaatttgtaa
Protein Sequence
MSTQITFQIRSSPNGLTMENTLNVADCCRVCLRIDCTLTPTSNEDNDSIKFCDKLLACVSEIVWLKEGLPSLICGTCIDRLRIAYEFRNVCLHSDQALQRYMKNLEDDTKTFGSRPLTTPTKFEFVVPTTIHDALNLGEEPPNAEYLHLKHFLDNEEILKSETLVDAATSRSTSPDSASTGFINTSNQQQQQQQQHQQPTPVLPQMQQQQIHQQIPSPHESASPMQHQPQQIQIVQSPTTTHQIHVVQQQQEQPIHYVKSTSPTMPPRQIIKRTTGIQVRPPTPPSNNMTDTAQQDFKPYTCQVCGRNYRKNANLRIHMRTHTGEKPFECKYCEKRFYHSSHLREHIRRHTGEKPFQCAVCNKRFTIKGELTMHMKSHTGEKPYACACCDRRCLTAADLKVHMRTHTGEKPFACLTCGKKFASTYILNSHIKTHTGERPYSCTICEKTFTQSSHLNVHMRKHTGEKVSCKVCNAQFTHSSQLTVHMREHTGRQPYKCTTCDKVCNYASELQTHMMKHTGEKFTCVTCDKKFTTAAYLQEHTRTHTGENLSTCTICDRQFTRHQYLEKHMRTHTGEKPYTCFICGKKFTQSSSLKVHIRIHTGEKPYECTVCNRRFTTSSDLSAHNKKHKKYINL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-