Basic Information

Insect: Pediacus dermestoides
Gene Symbol: -
Assembly: GCA_963942485.1
Location: OZ012625.1:58141541-58145832[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.96 88 4.3 0.6 2 20 125 143 124 145 0.90

2 16 0.0013 0.12 13.3 1.0 1 23 166 188 166 188 0.94

3 16 0.0009 0.083 13.8 1.4 2 23 194 215 193 215 0.92

4 16 2.2e-05 0.002 18.9 0.5 3 23 233 253 232 253 0.98

5 16 2.8e-07 2.5e-05 24.9 0.8 1 23 259 281 259 281 0.97

6 16 5.2e-06 0.00048 20.9 0.8 1 23 287 309 287 309 0.95

7 16 1.6e-05 0.0015 19.3 2.6 1 23 318 340 318 340 0.98

8 16 4.9e-05 0.0045 17.8 0.5 1 23 371 393 371 393 0.98

9 16 4.8e-05 0.0044 17.8 0.2 1 23 399 421 399 421 0.97

10 16 7.4e-07 6.8e-05 23.5 1.8 1 23 427 449 427 449 0.95

11 16 0.0047 0.43 11.6 2.2 1 23 458 480 458 480 0.98

12 16 2.7e-07 2.5e-05 24.9 1.3 1 23 486 508 486 508 0.99

13 16 9.4e-05 0.0086 16.9 1.3 1 23 514 536 514 536 0.98

14 16 0.00035 0.032 15.1 0.1 1 23 542 564 542 564 0.97

15 16 2.7e-06 0.00025 21.8 0.3 1 23 570 592 570 592 0.98

16 16 0.0055 0.5 11.4 0.4 3 23 601 621 599 621 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.96	88	4.3	0.6	2	20	125	143	124	145	0.90
2	16	0.0013	0.12	13.3	1.0	1	23	166	188	166	188	0.94
3	16	0.0009	0.083	13.8	1.4	2	23	194	215	193	215	0.92
4	16	2.2e-05	0.002	18.9	0.5	3	23	233	253	232	253	0.98
5	16	2.8e-07	2.5e-05	24.9	0.8	1	23	259	281	259	281	0.97
6	16	5.2e-06	0.00048	20.9	0.8	1	23	287	309	287	309	0.95
7	16	1.6e-05	0.0015	19.3	2.6	1	23	318	340	318	340	0.98
8	16	4.9e-05	0.0045	17.8	0.5	1	23	371	393	371	393	0.98
9	16	4.8e-05	0.0044	17.8	0.2	1	23	399	421	399	421	0.97
10	16	7.4e-07	6.8e-05	23.5	1.8	1	23	427	449	427	449	0.95
11	16	0.0047	0.43	11.6	2.2	1	23	458	480	458	480	0.98
12	16	2.7e-07	2.5e-05	24.9	1.3	1	23	486	508	486	508	0.99
13	16	9.4e-05	0.0086	16.9	1.3	1	23	514	536	514	536	0.98
14	16	0.00035	0.032	15.1	0.1	1	23	542	564	542	564	0.97
15	16	2.7e-06	0.00025	21.8	0.3	1	23	570	592	570	592	0.98
16	16	0.0055	0.5	11.4	0.4	3	23	601	621	599	621	0.97

Sequence Information

Coding Sequence: atgagctGGACTAATATTCATATTACCGATTTTAATATACTGTGTAGAATATGCTTACAATCTAAATCAGATATGAACTATTTATTTCAAGGCGAAGCAGCAAATATGTTAAATAGTGGCCGATTTATGGAGGTTTTTGAAAATGATGGATTTCCAACTCAGATATGTGACACCTGTGAACAAGAACTAATACAAAGTTATGCCTTTAGGCAAAAATGCTCAAAAGCCCAAAGTACATTGCATAAGCTAGTATCCGCTCTAGTCGTAAAAGAGGAAATTACTATAGTTACAGAAGACGAAGATACATTGGGAAATCAAAATCCTCATGTCGTCCATATTACAAACCAGGACGTAGACAGTAATATCACATTAATTTGTAGCACTTGTAACAACTATTTCCCATCAAAAGACGAATTCGACGTACACGAATGTTTACCAAAAGAaattaaagAACTGTTGACTACTAAGGGTGAGAATCCATCATCTTCCTTACCTTACAAATGTAATAAGTGCACCCAGTCATTCAAGGAAGAGTTTGATTTAGAACTGCACGAAACTGCGCACTCTTCTAGTCAACTTAAGTGCATTACATGTAAAAAAACGTTCAACTCAAGTCAAATGTTATTGAGACATATTAAAGGCCACATGGAGAATTTAATGAAGCATACTAGTGAGTTGGGAGAAAAGACAAATTTTTGTGCAGAATGTGGACAAGGGTTTAAAGAGAGACGATATTTAGCTCGCCACATGAGATCCCACGCTGGTGGAAAACCATTTGCTTGTTCGGAGTGTGATAAATCTTTTCCTACTTCAACAGAACTGAAAATGCATACTAGAACTCACACTGGGGAAAAGCTATTCCTATGTTCAATATGTGGAAAAAGCTACACACGGGCTTATTCGCTTAAACTACATTTCCAAATTCACATGGATAAATCTGGAGAAAACCTATTTGCTTGTGATAAATGTACAAAAAGATTTCGGTATAGAAAGGGCTTACTTCAACATTTGAGAACCCATACTGGAGGAAAACCATACAAACGCCTAACATGTCTCACCCAGAACCTCGTGCTCACTAAACCTTTCCGAACCCACACAGGAGAAAAGTTATACGCTTGTGATAAATGTCCAAAAACTTATAAAGAGAAGCGACTTTTAATTGGCCACTTGAGATCTCACACTGGGGAAAAACCATTTGCTTGCTCTATGTGCGACAAGGCTTATGCTACTTCAACTGGATTAAAAATGCATACTAGAGCTCACACTGGGGAAAAACCGTACCTATGCTCAAAATGTGGAAAAAGCTTCACACAGTCTTCGTCGCTTAACGAACATTTTCGACTTCATATGGATAAGTCGGGAGAAAAGCTGTATGCTTGTAATATATGTACAAAAACatTTCAATGTAGAAATGGCTTAGTTCAACACGTGAGAACCCACACTGGAGAAAAACCATACAAATGCTCAATATGTGGCAAGGGCTTCACACAGTCTTCAGCACGTATTAAACATTACCGAACCCACACAGGAGAAAAGCCATACGCTTGTGATAAATGTACAAAAACtttttcttCTAACGGCGGTTTAAAGTTCCATTTGAGATCCCACACAGGTGAAAAGCCGTTTGTTTGTTCCATGTGTGGCAAGTCGTTTGTTGGTCCATTAGGACTGAAATTCCACATTAGAAGCCACACTGGAGAAAAACCACACAAATGCTCGATATGTGGCAAGGGCTTCGCACAACCTTCAGCACGTAATGTACATTTGAGAATTCACGCAAAAGAGACGTCACCATATGGTTGTGATAGATGTACTGAAAGATTTAGTCTGAAAGGCGATTATATTCGGCATTTGGGAACCCACTCAGCTTAG
Protein Sequence: MSWTNIHITDFNILCRICLQSKSDMNYLFQGEAANMLNSGRFMEVFENDGFPTQICDTCEQELIQSYAFRQKCSKAQSTLHKLVSALVVKEEITIVTEDEDTLGNQNPHVVHITNQDVDSNITLICSTCNNYFPSKDEFDVHECLPKEIKELLTTKGENPSSSLPYKCNKCTQSFKEEFDLELHETAHSSSQLKCITCKKTFNSSQMLLRHIKGHMENLMKHTSELGEKTNFCAECGQGFKERRYLARHMRSHAGGKPFACSECDKSFPTSTELKMHTRTHTGEKLFLCSICGKSYTRAYSLKLHFQIHMDKSGENLFACDKCTKRFRYRKGLLQHLRTHTGGKPYKRLTCLTQNLVLTKPFRTHTGEKLYACDKCPKTYKEKRLLIGHLRSHTGEKPFACSMCDKAYATSTGLKMHTRAHTGEKPYLCSKCGKSFTQSSSLNEHFRLHMDKSGEKLYACNICTKTFQCRNGLVQHVRTHTGEKPYKCSICGKGFTQSSARIKHYRTHTGEKPYACDKCTKTFSSNGGLKFHLRSHTGEKPFVCSMCGKSFVGPLGLKFHIRSHTGEKPHKCSICGKGFAQPSARNVHLRIHAKETSPYGCDRCTERFSLKGDYIRHLGTHSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -