Basic Information

Insect: Pediacus dermestoides
Gene Symbol: -
Assembly: GCA_963942485.1
Location: OZ012625.1:58147228-58154342[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.31 29 5.8 1.1 2 20 84 102 83 104 0.92

2 22 2.7 2.5e+02 2.9 0.6 2 20 155 173 154 175 0.90

3 22 0.0011 0.1 13.5 1.9 1 23 200 222 200 222 0.95

4 22 0.0028 0.26 12.3 2.7 2 23 228 249 227 249 0.93

5 22 4.4e-05 0.004 18.0 3.8 1 23 269 291 269 291 0.97

6 22 8.8e-05 0.0081 17.0 0.3 1 23 297 319 297 319 0.96

7 22 0.00016 0.014 16.2 0.1 3 23 325 345 324 345 0.98

8 22 0.00034 0.031 15.2 2.8 1 23 354 376 354 376 0.97

9 22 8.4e-09 7.7e-07 29.7 2.2 1 23 382 404 382 404 0.99

10 22 3.1e-06 0.00028 21.6 0.2 1 23 410 432 410 432 0.94

11 22 1.9 1.8e+02 3.4 0.3 1 11 438 448 438 453 0.84

12 22 0.31 29 5.8 1.1 2 20 572 590 571 592 0.92

13 22 1.4 1.3e+02 3.8 0.9 2 20 643 661 642 663 0.91

14 22 0.0011 0.1 13.5 1.9 1 23 688 710 688 710 0.95

15 22 0.0028 0.26 12.3 2.7 2 23 716 737 715 737 0.93

16 22 0.016 1.4 9.9 3.9 1 23 757 779 757 779 0.97

17 22 0.00059 0.053 14.4 0.3 1 23 785 807 785 807 0.92

18 22 8.7e-05 0.008 17.0 0.1 3 23 813 833 812 833 0.98

19 22 0.00055 0.051 14.5 0.9 1 23 842 864 842 864 0.97

20 22 7.9e-09 7.2e-07 29.7 2.1 1 23 870 892 870 892 0.99

21 22 4.8e-06 0.00044 21.0 0.2 1 23 898 920 898 920 0.93

22 22 7.7e-06 0.0007 20.3 4.4 1 23 926 948 926 948 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.31	29	5.8	1.1	2	20	84	102	83	104	0.92
2	22	2.7	2.5e+02	2.9	0.6	2	20	155	173	154	175	0.90
3	22	0.0011	0.1	13.5	1.9	1	23	200	222	200	222	0.95
4	22	0.0028	0.26	12.3	2.7	2	23	228	249	227	249	0.93
5	22	4.4e-05	0.004	18.0	3.8	1	23	269	291	269	291	0.97
6	22	8.8e-05	0.0081	17.0	0.3	1	23	297	319	297	319	0.96
7	22	0.00016	0.014	16.2	0.1	3	23	325	345	324	345	0.98
8	22	0.00034	0.031	15.2	2.8	1	23	354	376	354	376	0.97
9	22	8.4e-09	7.7e-07	29.7	2.2	1	23	382	404	382	404	0.99
10	22	3.1e-06	0.00028	21.6	0.2	1	23	410	432	410	432	0.94
11	22	1.9	1.8e+02	3.4	0.3	1	11	438	448	438	453	0.84
12	22	0.31	29	5.8	1.1	2	20	572	590	571	592	0.92
13	22	1.4	1.3e+02	3.8	0.9	2	20	643	661	642	663	0.91
14	22	0.0011	0.1	13.5	1.9	1	23	688	710	688	710	0.95
15	22	0.0028	0.26	12.3	2.7	2	23	716	737	715	737	0.93
16	22	0.016	1.4	9.9	3.9	1	23	757	779	757	779	0.97
17	22	0.00059	0.053	14.4	0.3	1	23	785	807	785	807	0.92
18	22	8.7e-05	0.008	17.0	0.1	3	23	813	833	812	833	0.98
19	22	0.00055	0.051	14.5	0.9	1	23	842	864	842	864	0.97
20	22	7.9e-09	7.2e-07	29.7	2.1	1	23	870	892	870	892	0.99
21	22	4.8e-06	0.00044	21.0	0.2	1	23	898	920	898	920	0.93
22	22	7.7e-06	0.0007	20.3	4.4	1	23	926	948	926	948	0.96

Sequence Information

Coding Sequence: ATGTTAAATACTGGGCAGTTCATGGAGgtctTTGAAAATGATGGATTACCAGCACAGATATGTGATAAATGTGAACAAGAACTAATACAAAGCTATgcgtttaaacaaaaatgttcaaCCGCACAAAGTACATTGCAAAAATTGAGGCTGACATCCTCTCCAATCACTGTAAAAGATGAACTTATTACAGAACCCGAAGGTCCAGTGTTAGAAGACCACCAACTAAACGACGAAGATACTATCACATTAAGTTGTACCCACTGTAAAAGTGATTTTCCATCAAAATACGGATTAGTCATACATGAATGTTTACCTACTAAAGACAacgtaattaaaaaatcagGTCAGAAGTTATTACATAAGTTGCTAGAAGACTTACCAATTCAAATCagtgattcaaattcaaagCGTGAAGTTACTATAAAAGATGAAGGATTACAATTGTTAGACGAGCACAGATTAAGTTGTACCACTTGTAGAAATTACTTTCCATCACAAGGTGAATTAGACGAACATGAATGTTCACCGAGAAATGTTTCAAGCACAACTCAAGATTTAACACCGTCATTAAATGTTGATCCACTGGATCTTTTACCTTACAAATGTAGTAAATGTAAGCAGTCATTCAGTGAATTCTACGATTTGCGGCTGCATGAATCTGCACATGCTGCTAGTATAATTAAATGTATTGTTTGCAAAAGATCGTTTTGTACAAGAAACATGTTAATGAGACATGTTAAAATCCATATGGTGGGAAAGCCGCTCATTTCCCAAGAATGTAGGAAACAGCCGAAAGAAACGAACCATATTTGTGAAGAATGTGGGTCAAGGTTTAAAGAGAGACGACATTTAGCTCGCCACATGAGATCCCACGCTGGTGGAAAATCATTTGCTTGTTCTGAGTGTGACGAATCTTTTCCTACTTTAACAGAACTTAAAATGCATAATAGAAATCACACTGGGGAAAACATATGCTCAGTATGTGGAATAGGCTACGCACGGGCTTATTCGCTTAAACTACATTTACAAACCCACATGGATAAATCCGGAGAAAAGCTATTTGCTTGTGATAAATGTACAAAAAGGTTTTTGACTCCGCATTCTTTAAACCGCCACATGTTGAATCACACAGGAGAAAAACCGTACAAATGTCACATATGCCCTAAAACGTTTACACAAAATGGTCAATTAACCATCCATATTCGAACTCACACTGGGGAAAAACCTTACATATGCCCAACTTGTGGTAAGGGCTTCAATCAGTCTTCATCGCTTTTCAAACATGCCGTAATCCACACAGGAAAAAAGTCACATGCTTGtggaaaatgtacaaaaagTTTTGATTTGAGAAATAAAATGAGctcaaaaaatgatatttctATTACTAAATTTGATTTACTGTGTCGAATATGTTTGGAATCTGAATCCGATATGAAGTATTTATTTCAAGGTGAAGCAGCAAATATGTTAAATACTGGGCAGTTCATGGAGgtctTTGAAAATGATGGATTACCAGCACAGATATGTGATAAATGTGAACAAGAACTAATACAAAGCTATgcgtttaaacaaaaatgttcaaCCGCACAAAGTACATTGCAAAAATTGAGGCTGATATCCTCTCCAATCACTGTAAAAGATGAACTTATTACAGAACCCGAAGGTCCAGTGTTAGAAGATCACCAACTAAACGACGAAGATAATATCACATTAAGTTGTACCCACTGTAAAAGTGATTTTCCATCAAAATACGGATTAGTCATACATGAATGTTTACCTACTAAAGACAacgtaattaaaaaatcagGCCAGAAGTTATTACATAAGTTGCTAGAAGACATACCAATTCAAATCAGTGATTCAAATATAAAGCGTGAAGTTACTATAAAAGATGAAGGATTACAATTGTTAGACGAGCACAGATTAAGTTGTACCACTTGTAGAAGTTACTTTCCGTCACAAAGTGAATTAGACGAACATGAATGTTCACCGAGAAAtgtttcaagCACAACTCAAGATTTAACACCGTCATTAAATGTTGACCCACTGGATCTTTTACCTTACAAATGTAGTAAATGTAAGCAGTCATTCAGTGAATTCTACGATTTGCGGCTGCATGAATCTGCACATGCTGCTAGTATAATTAAGTGTATTGTTTGCAAAAGATCGTTTTGTACAAGAAACATGTTAATGAGGCATGTTAAAATCCATATGGTGGGAAAGCCGCTCATTTCCCAAGAATGTAGGAAACAGCCGAAAGAAACGAACCATATTTGTGAAGAGTGTGGGTCAAGGTTTAAAGAGAGACGACATTTAGCTTTCCACATGAGATCTCACACTGGTGGAAAACCATTTGCTTGTTCTGAGTGTGACGAATCTTTTCCTACTTTAACAGAACTTAAAATGCATAATACAAATCACACTGGGGAAAACATATGCTCAATATGTGGAATAGGCTACGCACGGGCTTATTCGCTTAAACTACATTTACAAACCCACATGGATAAGTCCGGAGAAAAGCTATTTGCTTGTGATAAATGTACAAAAAGGTTTCTGACTCTGCCTTCTTTAAACCGCCACATGTTGAGTCATACAGGAGAAAAACCGTACAAATGTCACATATGCCCTAAAACGTTTACACAAAGTGGTCAATTAACCATCCATATTCGAACTCACACTGGGGAAAAACCTTACATATGCCCAACTTGTGGTAAGGGCTTCAATCAGTCTTCATCACTTTTCAAACATGGCGTAATCCACACAGGAAAAAAGTCACATGCTTgtgaaaaatgtacaaaaagGTTTAGCCTGAGGAGTAATTTAAATCGCCATTTGAAAACTCATAGGGATGAATAA
Protein Sequence: MLNTGQFMEVFENDGLPAQICDKCEQELIQSYAFKQKCSTAQSTLQKLRLTSSPITVKDELITEPEGPVLEDHQLNDEDTITLSCTHCKSDFPSKYGLVIHECLPTKDNVIKKSGQKLLHKLLEDLPIQISDSNSKREVTIKDEGLQLLDEHRLSCTTCRNYFPSQGELDEHECSPRNVSSTTQDLTPSLNVDPLDLLPYKCSKCKQSFSEFYDLRLHESAHAASIIKCIVCKRSFCTRNMLMRHVKIHMVGKPLISQECRKQPKETNHICEECGSRFKERRHLARHMRSHAGGKSFACSECDESFPTLTELKMHNRNHTGENICSVCGIGYARAYSLKLHLQTHMDKSGEKLFACDKCTKRFLTPHSLNRHMLNHTGEKPYKCHICPKTFTQNGQLTIHIRTHTGEKPYICPTCGKGFNQSSSLFKHAVIHTGKKSHACGKCTKSFDLRNKMSSKNDISITKFDLLCRICLESESDMKYLFQGEAANMLNTGQFMEVFENDGLPAQICDKCEQELIQSYAFKQKCSTAQSTLQKLRLISSPITVKDELITEPEGPVLEDHQLNDEDNITLSCTHCKSDFPSKYGLVIHECLPTKDNVIKKSGQKLLHKLLEDIPIQISDSNIKREVTIKDEGLQLLDEHRLSCTTCRSYFPSQSELDEHECSPRNVSSTTQDLTPSLNVDPLDLLPYKCSKCKQSFSEFYDLRLHESAHAASIIKCIVCKRSFCTRNMLMRHVKIHMVGKPLISQECRKQPKETNHICEECGSRFKERRHLAFHMRSHTGGKPFACSECDESFPTLTELKMHNTNHTGENICSICGIGYARAYSLKLHLQTHMDKSGEKLFACDKCTKRFLTLPSLNRHMLSHTGEKPYKCHICPKTFTQSGQLTIHIRTHTGEKPYICPTCGKGFNQSSSLFKHGVIHTGKKSHACEKCTKRFSLRSNLNRHLKTHRDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -