Pder012182.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pediacus dermestoides
Gene Symbol
-
Assembly
GCA_963942485.1
Location
OZ012627.1:29737990-29741128[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00099 0.091 13.7 2.3 1 23 143 165 143 165 0.98
2 16 8e-05 0.0073 17.1 1.3 2 23 172 193 171 193 0.97
3 16 0.00084 0.077 13.9 1.9 1 23 200 222 200 222 0.96
4 16 0.00013 0.012 16.5 0.7 1 23 296 318 296 318 0.99
5 16 2.7e-07 2.4e-05 24.9 4.3 2 23 325 346 325 346 0.97
6 16 0.00015 0.013 16.3 4.4 2 23 365 387 364 387 0.97
7 16 0.00017 0.016 16.1 4.0 1 23 474 496 474 496 0.97
8 16 3.2e-05 0.0029 18.4 1.2 1 23 502 525 502 525 0.94
9 16 2.2e-06 0.0002 22.0 1.3 1 23 530 552 530 552 0.99
10 16 2.9e-05 0.0027 18.5 2.4 2 23 558 579 558 579 0.98
11 16 1.2e-08 1.1e-06 29.2 0.4 1 23 586 608 586 608 0.98
12 16 2.3e-05 0.0021 18.8 1.6 3 23 620 640 618 640 0.92
13 16 0.00031 0.028 15.3 4.1 1 23 646 668 646 668 0.99
14 16 2.9e-05 0.0026 18.5 2.0 1 23 674 696 674 696 0.96
15 16 7e-07 6.4e-05 23.6 0.4 1 23 702 724 702 724 0.99
16 16 0.00013 0.012 16.5 0.1 1 23 730 754 730 754 0.93

Sequence Information

Coding Sequence
ATGATAAACAAAGACCAACCTCTGGAAATAGACAAACTCTGTCGTTCCTGTATGACGAAAAACGACgaaatgcaaaatttattcgagaataaaacaaacaacgaaGGACAAACCTTACAGTTATCTGAAATGTTGATGGCTTGCACCACTATTCAtGTTTCATCTGGCGATGGCTTACCGTTTCAACTGTGTGATTCTTGTGCAGAAAAGCTCAACTTAGCATACGGTTTTAAGCAGCAAGTTGAGAAATCCGACACACTTCTTAGGGAGTTAACAGGTAATCCCGATCCCTCTAGAGGACTCAAAGAAGAAGTGGTGGTGAAACCCGATGTAAACGCAGATATGTTTGACGACGAAGACGATGACCAATTGCTTAACAGTGGACTGAAACGAAAGCGTGGTAGACCGAAGAAGATCACGCCAGGATTCACTTGTAACTTCTGCAAAAAAGTCCTCCAAACGAAAAAGGGTTTGCGTGTCCATGAACGACGACACACAGGTGAAAAACTGGTGTACTGTTTAATTTGCAACGCACAATTCACGCGTACTGGTCATCTAATCAGGCATTTAAAAACCCACGATAAGGAAGGGTTGCAGCATAATTGCAATGAATGTGATGCAACTTTTGCGACTGCTTACGAAATGTGCGAACATCGGCAGATACATGCGGATGTTGACTGTAAAGTTGTGGTGATTAGCGAGAATGTTGAGGGCGAAGGGGAAGCTAAAGAGAAAAAGGAGCTGGTTGAGGATGATGATAATGATAACGGACCGAGTTTTAGTGAGTTTGAGGATAATGGTAATAATGATGATAGCATGAGTGGTGGGGAAGGACTTGAGTCTGTGCAAGCAGAGGTGCCAAAAACGGAAAAGGAAAAAGTTATGTATCaatgtaaagtttgctcgaaAATTATGACTACGTACGCGGGACTTAAAATCCACATGAGAAGACATACTGGCAATGATTTGGAGGAGTGCAAGTACTGCGACAAATCGTTTACCAAAAAAAGCCATTTGAacagacatttacaaattcaTGGAATTACCCAGCCCGTTACTCCTAATAAGTCAGATAGAGAAAAGaaggTGATGGAATGTGAATTTTGCGATAGAAAATTCAAGTATAGGAAAAGCTTTAATCATCATATGCAAACAGAACATGGTATGTCGGATGAGAGTGACGGTTTTGAGGCcgattttatagaaaaatcagTGGCAACTATCAAATATACTGTGCCAGATCCTGAACTTTTAGATCCAGTTGCAATTGCAGCCAAATTAGAACAGCAGCAAGCTGAAAATCCTCCAGACACCAAGCCAACCAACGAATCGTCAACTGCTGATCATTTACCAACTGACGATGATGATGGTGACTCCCTTGAACTGCATATGCTTCCAAATCCGAAGAACTTCAAAGTGCACACTTGCCATGTCTGCAGTGCAATTTTCGCGCGAGCCAATCATTTAACGCGTCACATGTCTCTACATAGAGcagtattgattcataaatgtGACTCCTGTGACAAGGCGTATGCCACACCGGAACATCTGCAGAAGCATTTGGAGGAAGAGCATATTAATAAACCGTATGTTTGTGGTACTTGTAATAAACCGTTTAGTCGAGGAGAGCATTTGATTAGGCATTTAAAGACTCATGATACTCAACCGGCGAAATGCTCTATTTGTGAACACACCTTCACCAGGTCCGATCTTCTTGCCAGGCACACTAAAATTCATTTGCAGCAAGACAAACGGCATGTTTGTCCTGAGTGTGGTAAGGCTTTTAATAGACTGGACAACCTGAAGGCTCATCAACGAATCCACACGGGAATCAAAGACAGCTCCAAGTTACATTTGTGcatttactgtggaaaggagTTTAATAATTCCAGTAATATGattgTTCATATGAGGCGGCACACCGGGGAAAGGCCATATAAATGTGCGCAGTGTGGTAAAGGCTTCCCTAGATCTCACGATTTGAAATGTCATGAAAGGACGCATTCAGGCGAGAAGCCGTATCTTTGCACTCAGTGCGGAAAATCCTTCAACAAGAGCAACAAATTGCTTCGTCACAGTCGAGTCCATACAGGAGAACGCCCCTACGTTTGCAGCATTTGTACTCGCGCTTTCACCCAATCCAACGACTTGGCTTTGCATATGCGCCGTCACACTGGCGCTCGTCCCTACGCATGCGGTGTTTGCCCTGCCCGTTTCATCCAATCAGGTCAGCTGAAAGTCCACCGTAGAACCACAGGCCACTGGATGGAGACCCAGCCAGATCTTAAAGGAGGCCATCGTGTAGAGCCAGTGACTCCCGCATCTGAGCCAACTCCAATTCGATTCAAAACGCATAAAATCGAGGTTAAATTGGAGGAAGAAGGTGTGCCACCGCTTGCTGAGACTCCTCGGGTTTTCATGGGGATTATGGGGAATTTGAAGTTGGGGAACCAGGAGGTTATTTTAGATGAGACAAAGATAGTACAATTACAATCGAGTGGGCAGTTGCCTACGGTTATACATACAGCTAATGGGGAGGAAATAAAGTTTAAGTCGGAGCTGGGCACGTTTGAGATTACCAAGAGTGGGGAGGATAAGGCCGAGAGGGCTAGTACAAGTGCCGCTGCAGTGGTGGCGACTACAGCATTCCAAGAACATAGTgaaactgttaatttttctagtGTAAGTTCGGCTACAACGACGTTTCCGTCAACTGACAATTTTACGTTTCACCATAGTTTTGAATAG
Protein Sequence
MINKDQPLEIDKLCRSCMTKNDEMQNLFENKTNNEGQTLQLSEMLMACTTIHVSSGDGLPFQLCDSCAEKLNLAYGFKQQVEKSDTLLRELTGNPDPSRGLKEEVVVKPDVNADMFDDEDDDQLLNSGLKRKRGRPKKITPGFTCNFCKKVLQTKKGLRVHERRHTGEKLVYCLICNAQFTRTGHLIRHLKTHDKEGLQHNCNECDATFATAYEMCEHRQIHADVDCKVVVISENVEGEGEAKEKKELVEDDDNDNGPSFSEFEDNGNNDDSMSGGEGLESVQAEVPKTEKEKVMYQCKVCSKIMTTYAGLKIHMRRHTGNDLEECKYCDKSFTKKSHLNRHLQIHGITQPVTPNKSDREKKVMECEFCDRKFKYRKSFNHHMQTEHGMSDESDGFEADFIEKSVATIKYTVPDPELLDPVAIAAKLEQQQAENPPDTKPTNESSTADHLPTDDDDGDSLELHMLPNPKNFKVHTCHVCSAIFARANHLTRHMSLHRAVLIHKCDSCDKAYATPEHLQKHLEEEHINKPYVCGTCNKPFSRGEHLIRHLKTHDTQPAKCSICEHTFTRSDLLARHTKIHLQQDKRHVCPECGKAFNRLDNLKAHQRIHTGIKDSSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCAQCGKGFPRSHDLKCHERTHSGEKPYLCTQCGKSFNKSNKLLRHSRVHTGERPYVCSICTRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKVHRRTTGHWMETQPDLKGGHRVEPVTPASEPTPIRFKTHKIEVKLEEEGVPPLAETPRVFMGIMGNLKLGNQEVILDETKIVQLQSSGQLPTVIHTANGEEIKFKSELGTFEITKSGEDKAERASTSAAAVVATTAFQEHSETVNFSSVSSATTTFPSTDNFTFHHSFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-