Pder005305.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pediacus dermestoides
Gene Symbol
-
Assembly
GCA_963942485.1
Location
OZ012625.1:58171013-58197010[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 48 7.7e-05 0.0071 17.2 1.2 1 23 129 151 129 151 0.98
2 48 6.9e-05 0.0063 17.4 1.0 1 23 184 206 184 206 0.96
3 48 0.00019 0.018 15.9 2.7 1 23 215 237 215 237 0.98
4 48 3.6e-05 0.0033 18.2 6.8 1 23 243 265 243 265 0.99
5 48 2.4e-05 0.0022 18.8 2.1 1 23 271 293 271 293 0.99
6 48 1.2e-06 0.00011 22.9 2.5 1 23 299 321 299 321 0.98
7 48 9.4e-09 8.6e-07 29.5 4.1 1 23 327 349 327 349 0.99
8 48 0.0096 0.87 10.6 1.0 1 23 379 401 379 401 0.98
9 48 0.00093 0.085 13.8 0.2 5 23 410 428 406 428 0.93
10 48 7.6e-06 0.00069 20.4 0.8 1 23 433 455 433 455 0.97
11 48 1.1e-05 0.001 19.8 2.7 1 23 464 486 464 486 0.97
12 48 0.0094 0.86 10.6 8.1 1 23 501 523 501 523 0.99
13 48 1.6e-05 0.0015 19.3 0.5 1 23 529 551 529 551 0.99
14 48 4.2e-05 0.0038 18.0 1.9 1 23 557 579 557 579 0.98
15 48 5.7e-08 5.2e-06 27.0 1.9 1 23 585 607 585 607 0.99
16 48 2.6e-08 2.4e-06 28.1 2.3 1 23 613 635 613 635 0.99
17 48 2.5e-05 0.0022 18.8 1.8 1 23 641 663 641 663 0.98
18 48 0.18 17 6.6 0.2 8 23 667 682 666 682 0.95
19 48 2.8e-07 2.5e-05 24.9 0.4 1 23 688 710 688 710 0.99
20 48 4.1e-07 3.8e-05 24.3 2.0 1 23 716 738 716 738 0.98
21 48 2.2 2e+02 3.2 0.8 1 15 744 758 744 761 0.80
22 48 0.012 1.1 10.3 0.7 8 23 902 917 901 917 0.96
23 48 0.00095 0.086 13.8 2.0 1 23 923 945 923 945 0.98
24 48 3.2e-05 0.0029 18.4 6.8 1 23 953 975 953 975 0.99
25 48 0.00012 0.011 16.6 2.2 1 23 981 1003 981 1003 0.98
26 48 0.00018 0.017 16.0 3.6 1 23 1009 1031 1009 1031 0.96
27 48 0.025 2.3 9.3 1.9 1 23 1213 1235 1213 1235 0.98
28 48 0.00057 0.052 14.5 0.2 5 23 1244 1262 1240 1262 0.93
29 48 2.9 2.7e+02 2.8 0.0 7 22 1273 1288 1267 1288 0.88
30 48 1.1e-07 9.9e-06 26.2 3.3 1 23 1298 1320 1298 1320 0.97
31 48 1.5e-06 0.00014 22.6 0.9 2 23 1326 1347 1325 1347 0.97
32 48 0.00019 0.017 16.0 2.3 1 23 1353 1375 1353 1375 0.98
33 48 2.8e-05 0.0025 18.6 1.8 1 23 1381 1403 1381 1403 0.98
34 48 1.8 1.7e+02 3.4 0.4 1 14 1409 1422 1409 1425 0.81
35 48 0.00047 0.043 14.7 2.6 1 23 1563 1585 1563 1585 0.98
36 48 2.3e-05 0.0021 18.9 0.2 1 23 1618 1640 1618 1640 0.96
37 48 0.0013 0.12 13.3 2.1 1 23 1649 1671 1649 1671 0.97
38 48 3.1 2.8e+02 2.7 0.0 6 17 1682 1693 1682 1694 0.94
39 48 0.015 1.3 10.0 8.4 1 23 1739 1761 1739 1761 0.99
40 48 0.00043 0.039 14.8 1.4 2 23 1768 1789 1767 1789 0.98
41 48 0.22 20 6.3 0.8 8 23 1802 1817 1801 1817 0.96
42 48 0.00069 0.063 14.2 2.6 1 23 1823 1845 1823 1845 0.99
43 48 0.004 0.36 11.8 2.7 2 23 1852 1873 1851 1873 0.97
44 48 9.7e-07 8.9e-05 23.2 1.0 1 23 1879 1901 1879 1901 0.98
45 48 3.1e-05 0.0028 18.4 1.9 1 23 1907 1929 1907 1929 0.98
46 48 0.00074 0.068 14.1 1.8 1 23 1935 1957 1935 1957 0.98
47 48 5.2e-05 0.0047 17.7 0.5 1 23 1963 1985 1963 1985 0.97
48 48 3.1e-07 2.8e-05 24.7 2.4 1 23 1991 2013 1991 2013 0.99

Sequence Information

Coding Sequence
ATGCTAAATGTTGGCCAGTTTATGGAGGTTAGTGAAAATGATGGATTACCAGCTCAAATATGTGATATATGTGAACAAGAACTAGTAAAAAGCTATGCTTTTAAGCAAAAGTGTTCAGTATCTCAGAGGATTTTGAATGAATGGGTACAGGACAAAATAGCGTCTCCAATCACTGCTACAAATACCGTAAAAGATGAAATTGTTATAGAAGACGAAGGTTTACAACTATTACAAGATCAGCCTTTAGATGTAGATAATAATATCACATTAAACATAAAAAGGGAAGAATTAGACCAACATAAAGGTTTACTCCAAGACATTACAAACACTCCAAGAGAATTAACGGTGCGTCTAGTTAGGGTACAGCAACCACCTCCTTTAACTTACAAGTGTACTAAATGTCCGGAGTCATTCACTGAAAAGTTCGATTTGCAACTACACGAATCTACTCATTCACCTGTTGAATTCAAGTGTATTTGTTGTAAAAAGTCGTGCAGAAGTATACACAAATTAAAGTTGCATGTTAAAATCCACATGCTGATAAAGCCACATAGTTGTCCGGTGTGTGGCAAAGGTTATGTCCAGTTAAGAAATTTACACCAGCACATACAAGCGCATGTGGGAGAGCCGacgaaaaaaacttatttttgtgaTAAATGCGGAAAAGGATTTTCTAGGATGCACATCTTGAATCTCCATATGAGAACACATACTGGAGAAAAACCGTACAAATGCCACATTTGCCCGAAATCATGTTATCAAAGTGGTCATTTAATGATGCACCTTAGAACGCACACTGGTGAAAAACCGTTCAAGTGCCACATTTGTCTTAAATCATTTGCGGGAAGTAATCAATTAAGGATCCACCTTAGAAGCCACACAGGAGAAAAGCCGTATGCTTGTGATAAATGTAcaaaaagATTTTCTAGAAAGAGCAGCTTGAATGACCATTTGAAAACGCATACTGGAGAAAAACCGTACAAATGCCACATTTGCCAGAAATCGTTTATTCAGAATAGTAATTTAACGAGGCACATAAGAACGCACACTGGTAAAATGCCGTTCAAGTGCCACATTTGCTCtaATATAAAAACACCAAAGGAAATAACGACGTCTCAGGATGTTTACCCACATTATAAGTGTAATAAATGCACTGAGTTATTTAGTGAAGAGTTCGATTTGCAACTGCACGAATCTACACATGCCCCTGGTGAACTCATATGTATTGGTTGTGGTGAATCCTTCAAAACAAGGCAAATGTTACGATTACATGTCAGAATTCACATGAAGGGGCCCCATATTTGTCAGGAATGTGGTGAAAGTTATGCCCAGGTAGAAAATTTTAGGAGGCATATAAGGACGCATGTGGAGCAGTCGGAAGGAAAGAGACATATTTGTAAAGAGTGTGGAAAAGGATATTCAAAGAGGAATTACTTGACCGTGCACATGCGAAAACATTCTGGAGAACTTCACCTCGAGACTAACACCCTTGAAAAAGACTACAAATGCCACGTTTGCTCTAAATCATTTCTTAAGAATTGTCATCTAATCAACCACATTCAGACTCACTCGAGGGAAAAATCATTCAAGTGTAACATTTGCCTTAAATCATTTGTGGGAAATAAGGAATTAAGGATCCACCTTAGAATTCACACTGGAGAAAAGCCGTATGCTTGTgataaatgtacaaaaaaATTTTCCAGAAATAATGTTTTGAAAGTCCATTTGAAAACACACACTGGTGAAAGACCGTTCAAATGCCACATTTGCCCTAAATCGTTTATTCGAAATTGGAATTTAAACCTCCATATTCGAACTCACACTGGGGACAAACGGTACACTTGTTTAAAATGTGGCAAGAGCTTCTCGCAGTCTTATTCACTTACCAAACATATGAGGATCCACACTGGTGAAAAACCGTTCAAATGTGGTAAATGTGGCAAGAGCTTTTCACGATCTTCAGTTCTTTACGAACATTCTAAAAGCCACACAGGAGAAAAGCCATTTGCTAGAAGGTACCTCTTGAATCTCCATTTGAAAACCCACACTGGTGAAAAACCGTTCAAATGCCAGATTTGCCCTCAATCGTTTATTCAAAGCGGGAATTTAAACCTCCATATTCGAACTCACACTGGAGAAAAGCCGTATGCTTGTGATAAATGTacaaaaacATTTTCTAGAAGTGACCTCTTGAATCGTCATTTGAAAACCCACACTAGAGAAAAACCGTACAAATGCCACATTTGCCCAATATGTTTACAATCTGAATCCGATATGAAGTATTTGTTTCAAGGCGAGGCAGCAAATATGTTAAATACTGGGCAGTTCATGGAGgtctTTGAAAATGATGGATTATCAGCTCAGATATGTGATAAATGTGAACAAGAACTAATACAAAGCTATgcgtttaaacaaaaatgttcaaCAGCTCAAAGTAAATGGCATCACTTGGTACAAAATGTTTCATCTTCAATCAATGAATCAAATGCCGTAAAAGAGGAAATTATTATGGAAAAAGAAGACGAAGATCAATCGCTTACAGAGGAAATTACCGTAAAAGATGAAATTACTGTAAAAGACGAAgGTATTCCACAAGGAGTAACTTGTTCGCTCACATGCGAAAACATTCTGGAAAACATCACCTCGAGACTCACACCCTTGAAGAACACTACAAATGCCATGTTTGCTCgTACATTTTACAGGAAATCGTTTAATCAAAGTGGTAGTTTAACGAAGCACATTAGAAGTCACACTGGAGAAAAGCCGTATGCTTGTGATAAATGTACAAAAAGATTTTCTAGAAGGAACATCTTGAATCTCCATTTGAAAACGCATACTGGAGAAAAACCGTACAATTACAAATGCCACATTTGCTCTAAATCGTTTACTCAAAATGGTCatttaaaattccatattCGAACTCACACTGGGGAGAAACAGTACTCTTGTTCAAAATGTGGCAAGAGGTTCTTGCAATCTAGTGCACTTACCCAACATTTCAGAAGCCACACAGGAGAAAAGCCGCATGCTTGTGATAAATGTACAAAAAGCTTTTCTAGAAGAGACATCTTGAATCGCCATTTGAAAACGCATACTGGAGAAAAACGGTTCAAGTGCCACATTTGCCTAGTATGTTTACAATCTGAATCCGATATGAAGTATTTATTTCAAGGTGAAGCAGCAAATATGTTAAATACTGGGCAGTTTATGgaggtctTTGAAAATGATGGATTATCAGCTCAGATATGTGATAAATGTGAACAAGAACTAATACAAAGCTATacgtttaaacaaaaatgttcaaCAGCTCAAAGTAAATGGCATAACTTGGTACAAAATGTTTCATCTTCAATCAATGAATCAAATGCCGTAAAAGAGGAAATTATTATGGAAAAAGAAGACGAAGATCAATCCTTTACAGAGGAAATTAGCGTAAAAGATGAAATTACTGTAGAAGACGAAgGTTTACAATTATTAGATAATAACATGTTAGACGTAGACAATAGTATCACAGCATGTTGTAACATTTGTAAAAGTTATTTTCCAAAAGATGAACTAGACGAACATGAATGTTTTTCCAAAGAtataataaaaacaccAAAGGAAATAACGACGTCTCAGGATGTTTACCCACATTATGAGTGTAATAAATGCACTGAGTTGTTTAGTGAAGAGTTCGATTTGCAACTGCACGAGTGTACTCATGCCCCTGGTGAACTCATATGTATTGGTTGTGGTAAACCCTTCAaaaCAAGACAAATGTTACGGTTACATGTCAGAATTCACATGAAGGAGCCCCATATTTGTCAGGAGTATGGAGAAAGCTATGACCAGGTAGAAAATTTTAGGAGGCATATAAGGACGAATGTGGAGGAATCGGAAGGAAAGGGACATATTTGTAAAGAGTGTGGAAAAGGGTATTCCACAAGGAGTAACTTGACCAAGCACATGCGAAAACATTAtggaaaattattgaaatgtaACATTTGCTTTAAATCATTTGTCAGCAATAGTGAATTAAGGATCCACCTTAGAAGTCACACTGGAGAAAAACCGTACGTGTGCTCAAAATGTGGCAAGAGCTACTCACAATATCAACCTCTTTACAAACATTTCAGAAGCCACACAGGAGAAAGGCCGTATGCTTGTGATAAATGTACAAAAAGCTTTTCTAGGAGAGACATCTTGAATCGCCATTTGAAAACGCATACTGGAGAAAAACCGTTTAAGTGCCACATTTGCCCAATATGTTTAAAACCTGCATCAGAtatggattatttatttgaagggGAAGTAGCAAATATGCTAAATACTGGCCAGTTTATGGagGTTAGTGAAAATGATGGATTACCAACTCAAATATGTGGTATATGTGAACAAGAACTAGTACAAAGCTATGCTTTTAAGCAAAAATGTTCAGTATCTCAGAGGATATTGAATGAGTGGCTACAGGACAAAGTAGCGCCTCCAATCACTGCTACAAATACCGTAAAAGATGAAATTGTTATAGAAGACGAAGGTTTGCAACTAATACAAGAACAGCCTTTAGACGAAGATAGTAATATcacattaaacaaaaaaacagaaGAATTAGACCAACATAAAGGTTTACTCCAAGACATTACAAACACTACAAGAGAATTAACGGTGCGTCTAGTTAGGGTACAGCAACCACCTCCCTTAACTCACAAATGCACTAAATGTCCGGAGTCATTCACTGAAAAGTTCGACTTGCAACTACACGAATCTACTCATTCACCTGTTGAATTCAGGTGTATTTGCTGTAAAAAGTTGTTCGGAAATATACACAGGTTAAAGTCGCATGTTAAAATCCACATGCTGATAAAGCCGCATAGTTGTCCGGTGTGTGGTAAAGGTTATGTTCAGTTAAGAAATTTAGAGCAACACATACAGGCGCATGTGGGAGAGCCAACgagaaaaacgtttttttgtGATAAATGTGGAAATGGgtatacCGAGCGGAAATTCCTGATCAAACACATGCGAAAACATTCTGGAGAACGCCCACTAATCAGTCCACCGTGTGATAAAACATTTGCTACTCCAGCAAGTTTAAAAATGCTCTTGACTCACACCGGAAAAAATCGGTTCAAATGTCAGCTTGACCCttattcCACAAGCAGCAACTTGTCCGTTCCAATGCGAAAACATTCTAAAAAGCTTCACCTCCAGACTCACACCCTTGAAAAACACTACAAATGCCATGTTTGCTCTAAATCATTTCTTAAGAATTGTCATCTAATGAACCACCTTCGGATTCACTCGAGGAAGAAACCTGTCAAGTGTAACATTTGCCTTAAATCATTTGTGGGAAATAATCAATTAAGGACTCACTTTAGAAGGCACACTGGTGAACAACCGTATGCAGGTGATAAACGTAcaaaaagCTTTTCTAGAAATAATGTTTTGAAAGTCCATTTGAAAACACACACTGGTGAAAAACCGTTCAAATGCCATATTTGCTCTAAATCATTTCTTAAGATTGGTTATCTAAGGAACCACATTCGGATTCACTCGGGGGAAAAATCAATCAAGTGTAACATTTGCCTTAAATCATTTCTGAGAAATCATCAATTAAGAAGCCACCTTTTAAGTCACACTGGAGAAAAGCCGTATGCTTGTGATATATGTAcaaaaagATTTTCTAGGAGGGACCTCTTGAATCTCCATTTGAGAACACATACTGGAGAAAAGCCGTATGCTTGTGATAAATGTACAAAAAGATTTTCTAGGAGGGACGTCTTGAAGCTCCATTTGAAAACACATACTGGAGAAAAGCCGTACGCTTGTGATAAATGTACAAAAAGattttctagaaaatacatCTTGGATCTCCATTTGAGAACGCATACTGGAGAAAAGCCGTATGCTTGTGATAAATGTAcaaaaagATTTCCCAGGAAGGCCCTCTTGAATCTACATTTGAAAGCACATACTGAAGAAAAACCGTACAAATGCCACATTTGCCCTAAATCGTTTATTGAAAATAGGAATTTAAAGCTCCATATTCGAACCCACACTGGAGACAAATAG
Protein Sequence
MLNVGQFMEVSENDGLPAQICDICEQELVKSYAFKQKCSVSQRILNEWVQDKIASPITATNTVKDEIVIEDEGLQLLQDQPLDVDNNITLNIKREELDQHKGLLQDITNTPRELTVRLVRVQQPPPLTYKCTKCPESFTEKFDLQLHESTHSPVEFKCICCKKSCRSIHKLKLHVKIHMLIKPHSCPVCGKGYVQLRNLHQHIQAHVGEPTKKTYFCDKCGKGFSRMHILNLHMRTHTGEKPYKCHICPKSCYQSGHLMMHLRTHTGEKPFKCHICLKSFAGSNQLRIHLRSHTGEKPYACDKCTKRFSRKSSLNDHLKTHTGEKPYKCHICQKSFIQNSNLTRHIRTHTGKMPFKCHICSNIKTPKEITTSQDVYPHYKCNKCTELFSEEFDLQLHESTHAPGELICIGCGESFKTRQMLRLHVRIHMKGPHICQECGESYAQVENFRRHIRTHVEQSEGKRHICKECGKGYSKRNYLTVHMRKHSGELHLETNTLEKDYKCHVCSKSFLKNCHLINHIQTHSREKSFKCNICLKSFVGNKELRIHLRIHTGEKPYACDKCTKKFSRNNVLKVHLKTHTGERPFKCHICPKSFIRNWNLNLHIRTHTGDKRYTCLKCGKSFSQSYSLTKHMRIHTGEKPFKCGKCGKSFSRSSVLYEHSKSHTGEKPFARRYLLNLHLKTHTGEKPFKCQICPQSFIQSGNLNLHIRTHTGEKPYACDKCTKTFSRSDLLNRHLKTHTREKPYKCHICPICLQSESDMKYLFQGEAANMLNTGQFMEVFENDGLSAQICDKCEQELIQSYAFKQKCSTAQSKWHHLVQNVSSSINESNAVKEEIIMEKEDEDQSLTEEITVKDEITVKDEGIPQGVTCSLTCENILENITSRLTPLKNTTNAMFARTFYRKSFNQSGSLTKHIRSHTGEKPYACDKCTKRFSRRNILNLHLKTHTGEKPYNYKCHICSKSFTQNGHLKFHIRTHTGEKQYSCSKCGKRFLQSSALTQHFRSHTGEKPHACDKCTKSFSRRDILNRHLKTHTGEKRFKCHICLVCLQSESDMKYLFQGEAANMLNTGQFMEVFENDGLSAQICDKCEQELIQSYTFKQKCSTAQSKWHNLVQNVSSSINESNAVKEEIIMEKEDEDQSFTEEISVKDEITVEDEGLQLLDNNMLDVDNSITACCNICKSYFPKDELDEHECFSKDIIKTPKEITTSQDVYPHYECNKCTELFSEEFDLQLHECTHAPGELICIGCGKPFKTRQMLRLHVRIHMKEPHICQEYGESYDQVENFRRHIRTNVEESEGKGHICKECGKGYSTRSNLTKHMRKHYGKLLKCNICFKSFVSNSELRIHLRSHTGEKPYVCSKCGKSYSQYQPLYKHFRSHTGERPYACDKCTKSFSRRDILNRHLKTHTGEKPFKCHICPICLKPASDMDYLFEGEVANMLNTGQFMEVSENDGLPTQICGICEQELVQSYAFKQKCSVSQRILNEWLQDKVAPPITATNTVKDEIVIEDEGLQLIQEQPLDEDSNITLNKKTEELDQHKGLLQDITNTTRELTVRLVRVQQPPPLTHKCTKCPESFTEKFDLQLHESTHSPVEFRCICCKKLFGNIHRLKSHVKIHMLIKPHSCPVCGKGYVQLRNLEQHIQAHVGEPTRKTFFCDKCGNGYTERKFLIKHMRKHSGERPLISPPCDKTFATPASLKMLLTHTGKNRFKCQLDPYSTSSNLSVPMRKHSKKLHLQTHTLEKHYKCHVCSKSFLKNCHLMNHLRIHSRKKPVKCNICLKSFVGNNQLRTHFRRHTGEQPYAGDKRTKSFSRNNVLKVHLKTHTGEKPFKCHICSKSFLKIGYLRNHIRIHSGEKSIKCNICLKSFLRNHQLRSHLLSHTGEKPYACDICTKRFSRRDLLNLHLRTHTGEKPYACDKCTKRFSRRDVLKLHLKTHTGEKPYACDKCTKRFSRKYILDLHLRTHTGEKPYACDKCTKRFPRKALLNLHLKAHTEEKPYKCHICPKSFIENRNLKLHIRTHTGDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-