Pder017079.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pediacus dermestoides
Gene Symbol
SCRT1
Assembly
GCA_963942485.1
Location
OZ012630.1:6907877-6915327[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 63 0.0023 0.21 12.6 0.6 1 23 6 29 6 29 0.96
2 63 0.0028 0.25 12.3 3.0 1 23 34 56 34 56 0.98
3 63 0.004 0.36 11.8 0.1 2 23 62 83 61 83 0.97
4 63 2.9 2.7e+02 2.8 1.1 1 10 86 95 86 98 0.94
5 63 0.0031 0.28 12.1 0.9 1 23 110 133 110 133 0.96
6 63 0.0008 0.073 14.0 2.4 1 23 138 160 138 160 0.98
7 63 0.00016 0.015 16.2 0.1 2 23 166 187 165 187 0.98
8 63 0.071 6.5 7.9 3.1 1 23 190 213 190 213 0.96
9 63 0.066 6 8.0 4.0 1 23 218 240 218 240 0.94
10 63 4.3e-06 0.0004 21.1 2.0 1 23 249 271 249 271 0.97
11 63 0.00015 0.013 16.3 0.9 3 23 284 304 282 304 0.96
12 63 4.9e-05 0.0045 17.8 0.9 1 23 310 332 310 332 0.97
13 63 3.4e-07 3.1e-05 24.6 1.3 1 23 338 360 338 360 0.99
14 63 0.00021 0.019 15.8 0.2 1 23 384 406 384 406 0.99
15 63 0.012 1.1 10.3 5.8 1 20 411 430 411 433 0.93
16 63 0.00014 0.013 16.4 3.4 2 23 439 460 438 460 0.97
17 63 3.3e-05 0.003 18.3 0.2 1 23 465 488 465 488 0.97
18 63 0.0019 0.17 12.8 3.0 1 23 493 515 493 515 0.97
19 63 0.00038 0.034 15.0 0.3 1 23 524 546 524 546 0.97
20 63 0.0092 0.84 10.7 2.3 3 23 555 575 553 575 0.96
21 63 8.1e-05 0.0074 17.1 0.5 1 23 581 603 581 603 0.96
22 63 1.6e-07 1.5e-05 25.6 0.7 1 23 609 631 609 631 0.96
23 63 0.0011 0.1 13.6 1.5 1 21 637 657 637 658 0.96
24 63 3.5 3.2e+02 2.5 4.9 2 23 673 695 672 695 0.95
25 63 3e-06 0.00027 21.6 2.5 1 23 700 722 700 722 0.98
26 63 0.007 0.63 11.0 0.8 2 23 728 749 728 749 0.97
27 63 0.018 1.6 9.7 0.8 1 23 754 777 754 777 0.90
28 63 1.6e-05 0.0014 19.4 1.1 1 23 782 804 782 804 0.96
29 63 5.6e-06 0.00051 20.8 1.7 1 23 813 835 813 835 0.97
30 63 0.00044 0.04 14.8 1.6 1 23 841 863 841 863 0.97
31 63 0.00084 0.077 13.9 1.1 3 23 868 888 866 888 0.96
32 63 3e-05 0.0028 18.5 1.2 1 23 894 916 894 916 0.97
33 63 6.7e-06 0.00061 20.5 1.7 1 23 922 944 922 944 0.96
34 63 0.041 3.7 8.6 1.7 3 21 952 970 950 971 0.93
35 63 0.00076 0.069 14.1 6.1 1 23 989 1011 989 1011 0.97
36 63 2.7e-05 0.0024 18.6 0.4 3 23 1018 1038 1017 1038 0.97
37 63 0.0012 0.11 13.4 0.3 1 23 1043 1066 1043 1066 0.97
38 63 3.1e-06 0.00028 21.6 0.1 1 23 1071 1093 1071 1093 0.98
39 63 1.1e-05 0.001 19.8 0.4 2 23 1103 1124 1102 1124 0.97
40 63 0.0015 0.14 13.1 1.1 1 23 1128 1150 1128 1150 0.96
41 63 2.1 1.9e+02 3.3 0.3 3 23 1155 1173 1154 1173 0.89
42 63 7.1e-05 0.0065 17.3 0.3 1 23 1179 1201 1179 1201 0.98
43 63 1.1e-06 9.9e-05 23.0 3.2 1 23 1207 1229 1207 1229 0.98
44 63 0.2 18 6.4 3.0 2 23 1256 1277 1255 1277 0.94
45 63 0.00054 0.049 14.5 3.0 1 23 1282 1304 1282 1304 0.98
46 63 0.00092 0.084 13.8 0.5 2 23 1310 1331 1310 1331 0.96
47 63 0.00049 0.045 14.7 1.3 1 23 1335 1358 1335 1358 0.97
48 63 5.4e-06 0.0005 20.8 0.6 1 23 1360 1382 1360 1382 0.99
49 63 0.00051 0.047 14.6 1.0 1 23 1391 1413 1391 1413 0.95
50 63 0.61 56 4.9 0.8 1 23 1417 1438 1417 1438 0.74
51 63 1.1 1e+02 4.1 0.2 3 23 1443 1461 1442 1461 0.92
52 63 0.00013 0.012 16.5 0.3 1 23 1467 1489 1467 1489 0.98
53 63 1.3e-05 0.0011 19.7 4.7 1 23 1495 1517 1495 1517 0.98
54 63 0.012 1.1 10.3 0.6 1 23 1543 1565 1543 1565 0.99
55 63 8.9e-05 0.0082 17.0 1.8 1 23 1570 1592 1570 1592 0.98
56 63 7e-05 0.0063 17.3 0.9 2 23 1598 1619 1598 1619 0.98
57 63 0.22 20 6.3 0.0 3 23 1626 1647 1624 1647 0.90
58 63 1.6e-06 0.00015 22.5 0.7 1 23 1652 1674 1652 1674 0.98
59 63 3.1e-06 0.00029 21.6 0.4 1 23 1683 1705 1683 1705 0.96
60 63 0.00037 0.033 15.1 1.8 3 23 1714 1734 1712 1734 0.96
61 63 6.3e-05 0.0058 17.5 1.7 1 23 1740 1762 1740 1762 0.97
62 63 7.7e-08 7.1e-06 26.6 1.5 1 23 1768 1790 1768 1790 0.99
63 63 0.0016 0.15 13.0 1.1 1 19 1796 1814 1796 1817 0.94

Sequence Information

Coding Sequence
ATGCAAGAAGTAATGTTCCCATGCGAGGTTTGCGTTAAGGTATTCATGACAGAAAAACTACTACACCTTCACATGAAGGCCACTCATAAAAAACGTCGATTTAAGTGCGAAGTGTGCAATAAAACTTTCTTACGCGAACTTCACCTAACCGTCCACCGTCAAAGCCACGTCAACAATTCTGTTAAATGCCTAATATGCGACGAAATCCTACCGGATAAATTCACACTTAACACTCACATGCTAGTGCACAAAACGTTCACTTGCCAACACTGCAGCAAGCACTTCTTGCAACAGACCAGGATTGCTTCTCTGATGCAAGAAGTAATGTTCCAATGCGACGTTTGCTTTAAGGTAGTCATGACAGAAAAACAGCTACAACTTCACATGAAGTTCTCTCATAATAACCGTCGGTTTAAGTGTGAAGTGTGTAATAAAACCTTCTTACGCGAACCTCACTTAACCATCCACCGTCAAAGCCACGTCAACAATTCTGTTAAATGCCCAATCTGCGACGAAGTCCTACCCGACAAATTCACGCTTAGCACTCACATGAAAGTGCATAAACAATTCGCTTGCCAACACTGCAGCAAGCAGTTCTTGGAAAAGGCCTGGTTGGAACATCACATAAAATCCACTCACATAGGGATTAGATACAAATGTTCGCAGTGTCCGAAAATGTTCGCGAATCCCCACTACCGAAGGTTTCATGAGCGAAAGCACGCTCCAGGTTACAAAGCTATGCGTTATCCTTGCACAATTTGCGGGAAGGATTTTGCGAGGAAGCATCATGTGACTAGGCACATGGAAGCGCATAATATTGGGCCGAAAGTTCCGAAGAAAATGCACTTGTGTGATATTTGTGGGAAGGAAACTACCACTACTGCTTCTTTGGAGGCGCATAAGAGAACTCATACTGGAGAGAAGCcgttttcttgtaaactgtGCACGAAGACTTTTAACACGCTTAAGTCGCTAATAGTACATCAAGCGGTGCATACTAAAGAGCGGAATTACGAATGTATGGAGTGTGGGAAGAAGTACACTCAGAGGACTAGCTTACAGATACATATGAGGACGCATAGTGGGGAGCGACCTTATGGATGTGATGTTTGTTTGAAGAGGGTCGTTTCTCTGATGAAACAACTCCTCTACCAATGTGAAGTTTGCCGTAAGATATTCGTGACTGAAGGACAAATCAAAGTTCATTTAAAGGTTCATGGCGAACGCCGGTTTAATTGTGACGTGTGTGATAAACGCTTCCAAAAACGGTTTAATCTAAACCGCCACAAACAATGCCACGTCAGACAACCAGTGCGATGTCAAATCTGCAACAAAACCCTAATGAATAAACACTCGCTTAACACTCACATGAGATCTCACAGAACCCCAGAGTTTACTTGTAAATATTGCGACAGGGGGTTCGTGGAAAAAGCGGGGTTAGAACGCCATATAGAATCTACCCACAAGGGAATTCGACATACATGCACTCAATGCTCCAAAGTTTTCGTTAGTGAACAATACCTGAAGCTCCATGAGCAAAAGCACACACCAGACTATGAACCTACGCGTTATTCTTGCACAATTTGCGATAACGATTTCGCTACCAAATATCTTTTGAAAATTCACGTGGATTCCCATGTTAATGGCCAAAGGATACACTTGTGTGATATCTGTGGGAAAGGTATGACCACCACTAAATCCTTTCAAGCCCATAAAAGGACCCACACTGGAGAGAAGCCATTTGCATGTCAACTGTGCTCGAAGAGGTTTAACACGAAGAACGCTTTAAGGGTGCATCAAGCGGTGCATTCTAAAGAGCGGAATTATCTTTGCTCGGAGTGTGGGAAGGGGTTCACTCAGAGGAGTAGCTTGCAGATACATTTGAGGACGCATACTGGGGAGAAACCGTATGAGTGTGACGTGTGCTTCAAGAGATATATTACGAATACTTTGTTGAAGAAACATATCTGTCTAGAAGCGACTGTACTGTACTTCGACCCTCAGAACCCACTCTGTCATTGTACTATATGTGCTTTAACATTCCTCTCAACAAAAGAGTTTACAATGCATATGAGATCACAACATGGCCCACTTAGTTTTCGTTGTGAAACTTGTGGGAAGATTTTTAGAAGAAACTCTAAGTTAAAGGAGCATCGACTAAGACATACTACCAAGCcggaaaaatgcaaaatatgtaataaagttTTGGCGAATATGCTAACCTTAAAATCGCATATGGTAAAACACAAGGGCGGGAAGTTTAGTTGCACTTCGTGCGATATGAAATTCCATGACAAAACTGCGCTTCAAATGCATGTTGATGCAGTCCATAAAGGAATACGTCATCAATGTGCAGATTGTCCCAAGACGTTCATCAGTAGTTACTACTTGAAGAAGCACGCTGAAATCCATGCTCCTGACTACACCCCCCACCGTTTCCCATGCACAATCTGCAATAAGCACTTTTCCAACCAAGGATATCTAAAAATCCACTTAGAATCCCACACAAACACCTCTCAACACTCGTGTGATGTTTGTGGTAAATCCTTAACTTCCGAGTTAACTTTGAAAGCACATAAAAGAAGGCATACAATGCACTTGTGCGATATCTGTGGGAAAGAAATGACCACCAATGCATCGCTGGAATCCCACAAGAGAACCCACACTGGAGAGAAGCCGTTTCCTTGTAAATTGTGTTCGAAAAGTTTTAACACGAACCAGTTGTTAAAAGTACATCAAACGGTACACTCTAAGGAGCGACCACATGCTTGTGCGGAATGTGGGAAGAAGTATACTCAGAGGACTAGTTTGCAGATACATTTGAGGACGCATAGTGGGGAGAGGCCTTATGGATGTGAGGTGTGTTTGAGGAGGTTTGTTACGAGGACGTTGTTGAAGAAGCATACTTGTCGAGGACCGCTAGAAGCCTTTACCACCCACATGCTATCTCATGGTCCACTTCGTTTTAATTGTGATAAATGTACACAAGTCTTCACGTCACACTCTGAATTAACACACCATCGTCTGAAACATTTCAGCAAAATTGTAGCATGCGAAATATGCCACAAGGTTTTTGCTGATAAGCTCAATTTGGAATCGCATATGATAAATCACAGTGGGGGTAATTACGCTTGCGACTCCTGTGATAAGACATTCTATGCCAAGAAGTGGCTAGACCAGCATATGGATACAGTACACTTAAACGTAAGCTATCAATGTCCGGATTGTCCCAAGAGCTTCGTCAGTGGACAAAACTTGTTGAAGCATGTACAAGTTCATGCACCAGGGTACAAACCTCAAAGTATCCCTTGCACAATCTGCACTAAGCAGTTTTCTAATCAAGGATATTTGAACACTCATTTATTGACTCATGACCAAAAATATGTGTGTAATATTTGTGGTAAATCATGTTTTTCACGTGCAGTCTTGAAGGTCCATAGTAAAGCGCACATTAAGCAGTTATGTGATATCTGTGGAAAAGAAATATCCTCGAATATGGACGCTCACAAGAGAACTCATACAGGGGAGAGGCCGTATACTTGTAATTTATGCTCGAAAACTTTCGTCTCCATGACTGCGCTAAAAGTGCATCAAGCGGTGCATTCCAAATCGCGGAATCATAAATGTATGGAGTGTGGAAAGAGCTACACTCAAAAAACTACTTTGAACGTACATATGAGGATGCATAGTGGGGAGAGGCCTTATGGATGTGAGGTGTGCTTGAAGAGGACTTTATTGCTCGTTGGCACCCCGAAATCCCTCTGTCATTGTGGAGTATGCGCTGTAACATTTTTCTCAACAGAAGCCTTTACCAAACACATGCTATCTCATGGCCCGCTTCGTTTTAGTTGTGATATATGTGCACAAGTCTTCGGTTCACACTCTGCATTAACACATCATCGTCGGAAACATTTCAGCAAATCTGAAGAATGCAAAATATGCCATAAGGTTTTTGCTGATAAGGTCATTTTGGAAACGCATATGATAAACCATAGGAGTAAGTACGCTTGCGACTCCTGTGATATGAGATTCTGTGACAAGAAGTGGCTAGACAAGCATATGGATACAGTACACAGCTATCGATGTTCGGATTGTCCACAGAGATTCACCAGTGAACAAAACTTGTCGAACCATGTACGAGTCCATGCACCCGACAACAAACATCAAAGTTTCCTTTGCACAATCTGCAATAAACAGCTTACTAGTCAACGATATTTGAACATCCATTTATTGACTCATGACCAAACATATTTGTGTAATATTTGTGGTAAATTATATTCGCATTCAGCCTGGAGGGGCCATAAACAATTGCACATTAAGCAATTATGTGATATCTGTGGAAAAGAAATATCCTCAAATATGGACGCTCACAGAAGGACTCATACAGGAGAGAGGCCGTATACTTGTAAATTATGCTCGAAAACTTTCATCGAAATGAGTGCGTTAAGAGTGCATCAAGCGGTGCATTCCAAATCGCGGAATCACAAATGTATGGAGTGTGGAAAGAGCTACACTCAAAAAACTACTTTGAAAGTACATAAGAGGACGCATACTGGGGAGAGGCCTCATGGATGTGAGGTGTGCTTGAAGAGGCCGGTACTGTACTTCGATCCACAGAAACAACTCTACCAGTGTGAAGTTTGCTCTCAAATATTCCTCTCAACCAAAGACGTCACAAAGCACATGAAGGTACATGGTCCGGTTCGTTTCCGATGTAACGTTTGTGGgaaaattttcgctaaacATTCAGTGTTAAAAGTGCATCGACTAAGACACATAAGCCAACCGGAAAAATGCGAAATATGCAATAAAGTTTTGGCGAATAAGTTAAGTTTGAATTCGCATATGAGGAAACACGAGGGTGGTAAGATCGCCTGTGTCTCTTGCGATGTGAAGTTTTATGATATGACGGGGCTGCAACGCCATATTGACGCAGTGCACAAAGGCATACGCTATCAGTGTCCAGATTGTCCCAAAAACTTCACTAGTAACTACTATTTGAAAGTACACTCGCAAATCCACGCGCCCGACCATCAAACGCATCGCTTCCAATGTACAATCTGCGAGAAAAACTTCTCCAAtccaagaaatttaaaagtgcaCTTAGATGCTCATACTAACGGCCCACAACAACATCTATGCGATGTTTGTGGGAAGTCTTTGACTACTGGGAAATCGTTAAAAGCCCATAAAAGAACCCACACCGGTGAAAAGCCATTCCAATGTGACACATGTGGAAAGAAATTCAACACCACAAATGCTTTGAAGATCCACCATGCTGTTCACACGAAAGAGCGGGCTTTTAGGTGTGGGAAATGTGGGAAGAGTTACACTCAAAGTTCTAGTTTGACGGTACATTTGAGGACGCATTCGGGGGAAAGACCGTATGCTTGTGAAGTGTGCGGAAGGCGGTTTATTAAGAGGACGTTGCTGAATAAGCATAGTTGCCAAGGACCTAGTGATATAGTTAAGATAGAATGTGTAGGAGAATag
Protein Sequence
MQEVMFPCEVCVKVFMTEKLLHLHMKATHKKRRFKCEVCNKTFLRELHLTVHRQSHVNNSVKCLICDEILPDKFTLNTHMLVHKTFTCQHCSKHFLQQTRIASLMQEVMFQCDVCFKVVMTEKQLQLHMKFSHNNRRFKCEVCNKTFLREPHLTIHRQSHVNNSVKCPICDEVLPDKFTLSTHMKVHKQFACQHCSKQFLEKAWLEHHIKSTHIGIRYKCSQCPKMFANPHYRRFHERKHAPGYKAMRYPCTICGKDFARKHHVTRHMEAHNIGPKVPKKMHLCDICGKETTTTASLEAHKRTHTGEKPFSCKLCTKTFNTLKSLIVHQAVHTKERNYECMECGKKYTQRTSLQIHMRTHSGERPYGCDVCLKRVVSLMKQLLYQCEVCRKIFVTEGQIKVHLKVHGERRFNCDVCDKRFQKRFNLNRHKQCHVRQPVRCQICNKTLMNKHSLNTHMRSHRTPEFTCKYCDRGFVEKAGLERHIESTHKGIRHTCTQCSKVFVSEQYLKLHEQKHTPDYEPTRYSCTICDNDFATKYLLKIHVDSHVNGQRIHLCDICGKGMTTTKSFQAHKRTHTGEKPFACQLCSKRFNTKNALRVHQAVHSKERNYLCSECGKGFTQRSSLQIHLRTHTGEKPYECDVCFKRYITNTLLKKHICLEATVLYFDPQNPLCHCTICALTFLSTKEFTMHMRSQHGPLSFRCETCGKIFRRNSKLKEHRLRHTTKPEKCKICNKVLANMLTLKSHMVKHKGGKFSCTSCDMKFHDKTALQMHVDAVHKGIRHQCADCPKTFISSYYLKKHAEIHAPDYTPHRFPCTICNKHFSNQGYLKIHLESHTNTSQHSCDVCGKSLTSELTLKAHKRRHTMHLCDICGKEMTTNASLESHKRTHTGEKPFPCKLCSKSFNTNQLLKVHQTVHSKERPHACAECGKKYTQRTSLQIHLRTHSGERPYGCEVCLRRFVTRTLLKKHTCRGPLEAFTTHMLSHGPLRFNCDKCTQVFTSHSELTHHRLKHFSKIVACEICHKVFADKLNLESHMINHSGGNYACDSCDKTFYAKKWLDQHMDTVHLNVSYQCPDCPKSFVSGQNLLKHVQVHAPGYKPQSIPCTICTKQFSNQGYLNTHLLTHDQKYVCNICGKSCFSRAVLKVHSKAHIKQLCDICGKEISSNMDAHKRTHTGERPYTCNLCSKTFVSMTALKVHQAVHSKSRNHKCMECGKSYTQKTTLNVHMRMHSGERPYGCEVCLKRTLLLVGTPKSLCHCGVCAVTFFSTEAFTKHMLSHGPLRFSCDICAQVFGSHSALTHHRRKHFSKSEECKICHKVFADKVILETHMINHRSKYACDSCDMRFCDKKWLDKHMDTVHSYRCSDCPQRFTSEQNLSNHVRVHAPDNKHQSFLCTICNKQLTSQRYLNIHLLTHDQTYLCNICGKLYSHSAWRGHKQLHIKQLCDICGKEISSNMDAHRRTHTGERPYTCKLCSKTFIEMSALRVHQAVHSKSRNHKCMECGKSYTQKTTLKVHKRTHTGERPHGCEVCLKRPVLYFDPQKQLYQCEVCSQIFLSTKDVTKHMKVHGPVRFRCNVCGKIFAKHSVLKVHRLRHISQPEKCEICNKVLANKLSLNSHMRKHEGGKIACVSCDVKFYDMTGLQRHIDAVHKGIRYQCPDCPKNFTSNYYLKVHSQIHAPDHQTHRFQCTICEKNFSNPRNLKVHLDAHTNGPQQHLCDVCGKSLTTGKSLKAHKRTHTGEKPFQCDTCGKKFNTTNALKIHHAVHTKERAFRCGKCGKSYTQSSSLTVHLRTHSGERPYACEVCGRRFIKRTLLNKHSCQGPSDIVKIECVGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-