Pder009676.1
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- -
- Assembly
- GCA_963942485.1
- Location
- OZ012627.1:4790918-4792665[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-07 0.00015 21.8 0.0 1 40 18 58 18 61 0.94 2 2 3.9 2e+03 -1.0 0.0 17 40 276 299 267 302 0.75
Sequence Information
- Coding Sequence
- ATGGAACAAACGTACTCCAAGCAGTTGGGTATTAggagatataaaaattataccccGGAAACTCTAGAAAATGCTGTTGCTTTAATCAGGCAACGATCAATTTCACTCAGAAAAGCCAATAAACAATTCAAAATACCACAGGGAACATTGAGCCATAAACTTAATcagaaacatttaaacaaaccAGATCATCCCACTGTGTTTACCCAAATGGAGGAAGCTGCATTTATGAGACACCTCGAGGTGGTTTCCAAGTGGGGATTTCCTTTGAATTTAACTGACCTACGATTAACTGCTAAATATTTCCTAGATAAACGCGGCAGACAAGAGCCacattttaagaataactTTCCTTCAACAGATTGGGCGAGAAGTTTCTTGCTCCGTCACAAAGAGAGTCTTACCCAAAGACTTTGTCAATATATAAAGAGGAGTAGGGCCCGCGTAGGGAAAGAAATTGTTACagaatatttaaacaatttaaaagttaCTTTGACCAATGAAGATGGGAGTATGGTAGTACCACCAACGCACATTTTCAACTATGACGAGACAAATGTTGTTCTGAtgatgtattattatacaaacgatgaaaaaacagACATGTTCCTCATCTACGGGGAGTGTAGGAAAAATGCTACTGCCGCTGCAGACCTTTATATGCAAAGTTACCCAGCACGAAGACATCCGGTTCCTGAGACGTTTAAGAATCTTGAACATCAACTACGTCAAAACTGGCCTCCAATGAAAAGATATCGTCAGAGGACAGCTGCCGgacaagaaaatgaaattgctGTACTTGAAGCGATAGAAGAAAATCCTCACGTTAGTCAGACTGCATTGGCAAGACAAATAGGTATTAGTCAGTCTTCAGTTGGGCGTATTCTTcgagaaaataaattctacCCGTACCATTTGACCCTGacGGAACTGGCCCCGTTATTAGAAACTGTGGACTTAAATATCAGGCAGCATCTTTGGTTTCAACAAGATGGTGCCCCACCACACTACCATAGAATTGTGAGAGACTATTTGGATGCAAATTTTAGAGGCAGGTGGATAGGACGAGGATCGAACAATATTTGGCCACCCAGAAGTCCCGATTTGACTCCACAAAAGACAGAATTCGCCAAGAATGCATGGCTATAA
- Protein Sequence
- MEQTYSKQLGIRRYKNYTPETLENAVALIRQRSISLRKANKQFKIPQGTLSHKLNQKHLNKPDHPTVFTQMEEAAFMRHLEVVSKWGFPLNLTDLRLTAKYFLDKRGRQEPHFKNNFPSTDWARSFLLRHKESLTQRLCQYIKRSRARVGKEIVTEYLNNLKVTLTNEDGSMVVPPTHIFNYDETNVVLMMYYYTNDEKTDMFLIYGECRKNATAAADLYMQSYPARRHPVPETFKNLEHQLRQNWPPMKRYRQRTAAGQENEIAVLEAIEENPHVSQTALARQIGISQSSVGRILRENKFYPYHLTLTELAPLLETVDLNIRQHLWFQQDGAPPHYHRIVRDYLDANFRGRWIGRGSNNIWPPRSPDLTPQKTEFAKNAWL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -