Basic Information

Gene Symbol
stc_1
Assembly
GCA_003055125.1
Location
NDXZ01017007.1:1533-7333[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 2.3e+04 -4.4 1.6 15 19 597 601 596 601 0.81
2 13 0.069 8e+02 0.6 0.2 4 10 630 636 629 638 0.95
3 13 2e-05 0.24 11.9 16.7 1 19 642 659 642 659 0.93
4 13 2.5e-07 0.0029 17.9 13.2 3 19 697 713 695 713 0.91
5 13 3.3e-05 0.39 11.2 19.3 1 19 753 771 753 771 0.98
6 13 1.8e-05 0.21 12.0 14.4 4 18 819 833 812 834 0.86
7 13 0.0083 97 3.5 9.3 1 11 874 884 874 885 0.96
8 13 2 2.3e+04 -4.7 1.1 4 10 889 895 889 895 0.58
9 13 5.8e-10 6.7e-06 26.4 15.5 1 18 901 918 901 919 0.97
10 13 2 2.3e+04 -4.1 0.9 6 10 948 952 948 953 0.81
11 13 2 2.3e+04 -8.5 11.4 4 18 960 975 955 976 0.75
12 13 4.8e-08 0.00056 20.2 14.0 1 16 1012 1027 1012 1037 0.92
13 13 3.9e-07 0.0046 17.3 13.5 1 19 1044 1063 1044 1063 0.96

Sequence Information

Coding Sequence
atgtcggcAAATTCAAAGTCGCAGTCATCTCAGAACCAGCCACCTTTGTCGCAGCTTTGGCCGGGCTTTGGCTCATTAAGCAATGATCTGAACAACACTCTTGATCGACATCGTCAGCAGAATTCTCTAACCAGTGAGTCTTCTACGCCATTATCTTTGAACTTTGAGAATCAGTCGCAGCAGCCTAATATCAGTAATTATGTAAATTTCAATCAATTCATAGCACAACATAATTTGGCTTCATCTCGTCCAACTAAAACACCCATGTCTTCTTCTGTGGATGATAACTTTGATAAACTAGAAGGGCATAATAACTGCAAGAAATACGATGACGTTTTCAGTTTTATTCATAATATAGGCGCCCTGAACAATAACAGGAACAACAATAGTGCAAATGATAATGCCCTAAGTGAACATTTAAATCAACAGCAGctaaaacagcaacaatataATtaTTTTACACCGATTCCTCCCCAGTATCCATTTGTGAACATCGATAATAACAGTATGTTTTCTGGTGGCTTACAACATCTTAATATTAATCGTAATACCGGGCCGGAGGAGTTAGCAACATTGCCAGCAAAATCATATTCAGCAAATCAGAATTATTACGATGCCACCAATACATATGCTAACTTTAATACTAACGATACCACTTATTATGCCAATCCGTTTGCTACGGGTTTTGATTTTTACAATACCAAGTTGCAAGCCAATGCTCCCGAATTTGTACCAAGATTTGATAAACTTTCGTTAAACGAAACAATTCAAGAAGCTAATAGTAAACAGCAAATAGAAAGCGTTGCAAACAATGCAAACGAGAATTGTGTTAAGACTAAAGAGGTTACCGGTGAGAGTAAagataaatatcaaaatatggACACTAGTTTTGAAAAGGAAGAAAAACGTCTACAACAAAGACAAGATCGTAATCGTGGggggaataaaaataaatatgagaaGGAGAATAATCGCAGAAATAATCGTTTAGAAAGAAATATGGAAAGATTTTCAAGAAATTTACAAGAGAAACACCCAAACAATGATTCAGCATCAAATTCAAATTCTTCCACACCTTCTTTGACCATGAACAATGGTAAGGAAAGGGATAATCATCATCAGCAgctgcagcagcaacagcaacagcaatatCAATATCAATATCAAGGGCTTAGTAAATCTACTGGAGCTTTTAGCAGAAACCAACGTGGTTTTATTAACGACTTTAATAATGAAGGAGACAAACCGAAAACTTTAGACAGACAGGAAAAGGCAGGAGgagataaaaacaaatacatgaaACGTTATCAGAATGGTAAACGTTCACAGGATAATGAAGAACGTGAAGATCGTTTTGAACGTTATATGGAACGTGGTGAACGTTCGGAGCGCGGCAATAGCCAGCGTAATCAACAGCGCAATGATTATCATCAACGTTATGATAATTATCGCAGTAATAAGAGACGTGATGATTGGAATCGTAATCGAGATCGCATCAATGGTTTTCGTGTGGAGGAGAAATATTCCAATGATAATGTAAAGGACAGCCCTGTGGCTTCGCCTGAGAAGAAATCACCCAAAAAGGCATACGATAAAGAAAACGAGAAACTTTCGCAAAGAGAAAAACTTATAAGAGACATTGAAACAAGGCGTCTGGAATGCTTAGTGTGTGTAGAGCCCATAAAGGCTCATCATGGTGTTTGGTCTTGTTACAATTGCTATCATATTTTCCACTTGCAGTGCATAGTAAGATGGGCCTCTTCCTCGAAATCGGATGATGGCTGGCGCTGTCCTGCTTGTCAGAATGTTGAAAAAGATGTTCCTCGTGACTATTATTGCTTTTgtggcaaattaaaaaatccttttaataaTCGTCAGGATATTGCTCATTCCTGTGGTGAAGTATGTGGCCGCGTAGAGGGCTGTTCTCATGCCTGCACACTACAATGCCATCCGGGTCCCTGCCCACCCTGTCAGGCTCAAGTTAAACGCGAATGTGGCTGTGGCAAGACATCGAAAATCATGCAGTGCTGTCTCAAAGATATCATAGAATGTGATTCTATTTGTGAAAAGCTGTTGAACTGTGAATTGCACACTTGTCAGGAGAAATGCCATGAGGGCAAATGTCCAGCCTGTAAAGAGAAGGTTGATCAGAAATGCCACTGTTCAAAGCAGGAGCGGCAAGTTACTTGCACTCGCGAGTCTCATGATAAGCGCAACTATTCATGTGGCAAACTTTGTGGCAGGGATTTAAGCTGTGGCAATCATAAGTGCAAAGACTGTTGTCATCCCAATGAATGTAGACCCTGTAAGTTAAGTCCTGAGTATGTGACTTCTTGCCCTTGCGGCAAAATGCCTATTGTGGCGGAACAACGCAAATCCTGTTTGGATCCCGTACCCGTGTGTGAGGGTGTTTGTAGCAAGACCCTTAAATGTGGTAAAGCAACCAATCCCCATCATTGCACATCTAAATGTCACTTGGGTAATTGTCCTCCATGTAACAAACAGACTGCAGTTAAGTGCCGTTGCGGTCATATGGATCAAATGATAAAATGTCGCCAGTTGTCAACACGAGCCGATGATGCTCGATGCAAGAAACGCTGCACGAAAAAACGTTCCTGTGGCAAACACAAATGTAATCAAGAATGCTGCATAGACATTGACCACTTTTGTCCACTGCCTTGTAATTATACACTATCTTGTGGCAAGCACAAGTGTGATCAACCCTGTCACCGGGGCAATTGTCCACCCTGTTATCGTTCCTCGTTCGAAGAACTTTTCTGTGAATGTGGTGCTGAAGTTATCTATCCTCCCGTGCCCTGTGGTACCAAGCGTCCCGTTTGCAAGCGGCCATGTTCGCGTAAACACCCTTGCGATCATACACCTCAACATAACTGCCATTCGGCTGCCACTTGCCCACCCTGTATGATGTTTACAACCAAATGGTGTTTTGGTCAGCATGAACAACGTAAAACCATACCGTGTTCTCAGCATAGCTTCTCATGTGGTTTGGCCTGTAATAAACCATTGCCTTGTGGCCGTCACAAGTGCATAAAAACCTGCCACGAGGGTCCGTGTCAAGTGTCCGGTGAGATTTGCAAACAGAGCTGTACAACTGCACGTTCGAATTGTGGCCACAAGTGTATGGCACCCTGTCACAATGGGGATTGCCCCGAGAATCCCTGTAAAGAAATGGTTGAAGTTCAATGCCAATGCAGCAATCGCAAACAAATGCGCACCTGTGCTGAATTGGCACGTGAATTTAGTCGAATTGCCACGGCCCAGCTGGCATCTTCCATGGCCGAAATGCAACGCGGCAACTATATGGAACTGTCGGAAATTCTGGCTCCAGTCAAACTCTCCAGTAAATCCAACAAAACTCTAGATTGCAACGAAGAATGTCGTCTACTCGAACGTAATCGCCGCTTAGCAGTTGGTCTGCAAATACGAAATCCCGATTTGCCacaaaaacttcaaacaaaatattctgaTTTCATACGCAATTTTGCCAAACGCGATCCGGCTTTGGTTAAGTCAATACATGAAGCTCTAACAACACTGGTAAAATTGGCCAAAGAGAGTAAACAGAAGTCACGCTCGCATTCATTTCCCACCATGAATCGTGAAAAGAGACAGTTGGTACATGAGATGTGTGAGTTGTTTGGTGTAGAATCGGTGGCCTATGACGCTGAACCTAATCGCAATGTGGTAGCCACCGCTTATAAGGAAAGATCTTGGCTTCCAGCTACTAGTATTATGGAAGTAATGGCTCGTGAGGCTGGTCAAAGACGTGTTCCAGTACCGAGCAACAATGCCTGGGGCTTGAAGAGATAA
Protein Sequence
MSANSKSQSSQNQPPLSQLWPGFGSLSNDLNNTLDRHRQQNSLTSESSTPLSLNFENQSQQPNISNYVNFNQFIAQHNLASSRPTKTPMSSSVDDNFDKLEGHNNCKKYDDVFSFIHNIGALNNNRNNNSANDNALSEHLNQQQLKQQQYNYFTPIPPQYPFVNIDNNSMFSGGLQHLNINRNTGPEELATLPAKSYSANQNYYDATNTYANFNTNDTTYYANPFATGFDFYNTKLQANAPEFVPRFDKLSLNETIQEANSKQQIESVANNANENCVKTKEVTGESKDKYQNMDTSFEKEEKRLQQRQDRNRGGNKNKYEKENNRRNNRLERNMERFSRNLQEKHPNNDSASNSNSSTPSLTMNNGKERDNHHQQLQQQQQQQYQYQYQGLSKSTGAFSRNQRGFINDFNNEGDKPKTLDRQEKAGGDKNKYMKRYQNGKRSQDNEEREDRFERYMERGERSERGNSQRNQQRNDYHQRYDNYRSNKRRDDWNRNRDRINGFRVEEKYSNDNVKDSPVASPEKKSPKKAYDKENEKLSQREKLIRDIETRRLECLVCVEPIKAHHGVWSCYNCYHIFHLQCIVRWASSSKSDDGWRCPACQNVEKDVPRDYYCFCGKLKNPFNNRQDIAHSCGEVCGRVEGCSHACTLQCHPGPCPPCQAQVKRECGCGKTSKIMQCCLKDIIECDSICEKLLNCELHTCQEKCHEGKCPACKEKVDQKCHCSKQERQVTCTRESHDKRNYSCGKLCGRDLSCGNHKCKDCCHPNECRPCKLSPEYVTSCPCGKMPIVAEQRKSCLDPVPVCEGVCSKTLKCGKATNPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHFCPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELFCECGAEVIYPPVPCGTKRPVCKRPCSRKHPCDHTPQHNCHSAATCPPCMMFTTKWCFGQHEQRKTIPCSQHSFSCGLACNKPLPCGRHKCIKTCHEGPCQVSGEICKQSCTTARSNCGHKCMAPCHNGDCPENPCKEMVEVQCQCSNRKQMRTCAELAREFSRIATAQLASSMAEMQRGNYMELSEILAPVKLSSKSNKTLDCNEECRLLERNRRLAVGLQIRNPDLPQKLQTKYSDFIRNFAKRDPALVKSIHEALTTLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCELFGVESVAYDAEPNRNVVATAYKERSWLPATSIMEVMAREAGQRRVPVPSNNAWGLKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
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