Pmau009618.1
Basic Information
- Insect
- Paykullia maculata
- Gene Symbol
- -
- Assembly
- GCA_003055125.1
- Location
- NDXZ01030066.1:7612-10427[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.3 21 6.2 1.1 3 21 490 508 488 512 0.92 2 8 1.1e-05 0.00075 20.2 0.4 3 23 535 556 533 556 0.94 3 8 0.018 1.2 10.1 0.2 1 23 573 596 573 596 0.94 4 8 0.085 5.9 7.9 2.8 1 23 601 625 601 625 0.93 5 8 4.4 3e+02 2.6 5.2 2 19 696 713 695 718 0.89 6 8 0.021 1.4 9.9 1.9 2 23 808 828 807 828 0.75 7 8 2e-06 0.00014 22.5 0.5 1 23 834 857 834 857 0.97 8 8 1.2 81 4.3 1.9 1 13 884 896 884 896 0.92
Sequence Information
- Coding Sequence
- atgaatCACGGTTTGGACGATACCCATCTCTGCATTAAATGCAGTGACACAATTGTGGGTCTGGAAAACTATATACAACATCGTAAGCAAAATTGTTCTTTAGCCACAAAATCTTCAAATGAATCATCTGCAAAAACAACACCTTCAACATCCTCAACGACAACGCAACAGCAAAGTGCTGAAGTTACTCCTCAACATACTCCTGCCATAACATATGAACCCTTTAATTTCAGTGAACCTGAACCTCCAAATCCAGCCAGTCATGGTGGTAAAACCTCAAAGTCTTTAAGTGAAAGCTATGAGTTACCCTATGAATTGGAAGCCGATGTATTTTTCTCTTCATTGCAATTGCAAAGTGTGCAATCTTCGGTGGGACAAAATGTGCCTTCGGCGAGTGGAGGTAAAACTGGCAGTACACAACAGCAAAATGCACCCTTGACCAGGCAAAAATCATTGCAGCAAGAAACATCAGCAGAGGAAAGCTGGATTAATACCCATTCCTCGGAGACACCACATCAAAGTGGTGAAACATTCTTGAAAGCTGTCGTCAGTGAGATGGGAGAAACAAAAAAGTCATATGAGACCCTTTTTAAATATGAACACGAGTCGCCGGAGATGTCCGAAGAAGAAGATGAAGATGATatggatgatgatgatgatgaagattATGATCCAATGGCTGAGGCTCATGGCTCGGGTGGCAAATGGAAATTACCTCTAATGCGTCATTCACCTCCCGTAGTACCTGTATCTCACACAGGCGGTAAATGGAGACCAGAACAGCGTCCCAATCTAAGGGTAGCTCACTCACAACTTACGCGAGTATCACCTTCCTGGGATGATATAGATGGTCAAGAAGGTCAACATCCACCCTCTGATCACACTAAAGGTAAATGGGTGCCGGGCACTAAGATGCAGAGGTTGGAATATAAGGAAGTAGTGGAATTGGCTAAATGTAGTAACACAAATCAGGATTATTGGTGCAACATTTGTTGCCGCaaacttaaaagtaaaattatctATGAGAATCATTTAAAGACCTCATACCATTTAAAACGGGCCGAACCGGAAGTACAGTTGGAAAAGGCTGCCATTGAGGAAGTGCCAAGagagaatataaataaaagcctTCCCATAATGGAATTCAATCCTCTATCAATTACTGTCTCTGCGAATACGAAAAAGAGAAATAGAAGATctacttatttaaaatgtagTCTTTGTAAGCATGTCATGACTAGACATTTTATAGGAAAACATTTAATATCCCACTATCATTATCGCCGTATGCAGCAGCATCCTGGCATTTCACTAAACGTCATACTGGATAATATTCATGCCATTGTTTTACAATCACCATTTCAATGTCGTACTTGTTACTTCTATGCCAATACCGAGGAAGCTTTTTTGCTGCACTGGAACTCAGCCTCACATTTGGATGCATCTGAGGGTCCAGGTCGCTTCTGGTGTTCTTACTGTCAATTCGAATGTGAAGACAATAATCAAATGAGAAGACATCTTTTAGGTCCCGAACACAAGGAGGTGTTGCTGGCCATTAATCGTTCGGTTCCCGTTTGTATTAGCAAGCGTCTAAGCATAGATTGTCCAAAATGTGGTCAAACATTTCGTTTTAACTTTGAACTCAGGCGTcatattttaaacattcatCGCGCTACAGAATTTATGGGCTCTGCTTCGGACGTTTATCAATCGAAATTTAGATGTGATTCGTGTCCCGAAGTTTTGCCTTCAAAAATTGCTTTGCAAAGACatgaaaagtttaaacattctatttcgaaatatttttgctCCATATGCACATTGGAGTTCAATAGTCCCTGTAAAGCTCGAAGGCATCGTAAAACTTTGGAGCACAAGCAAAAGGCTTTAGCTTTAAATCAGAAACCCATCAAAGAAGTGGAAATAAAAGAactttttgaattgaaaatggAAAGAAAttCCAAACCTGCTCCAAATGAAATTGTGGAGTTGGAAGTGCAACGAGTTGATGAGAAACCTAGTACAAGTACACAAGCCATGCAGAAACTTTCACAGCCAACTTCTTCCCCAGCTAAAATATcagtaaaatgtaaaagatgCTCTTTCGTTTCCACTTCCAAAGATGAACTTAAACTGCATTGCCACAAAGAGCACATAAACTCCTTACATTGTTGCATATTGTGTTGCAAAAACTTTACCACAGCCCAAGAGCTGGGAAGACACTCAAGAGTTTGTAAACCAGCTACGGTTGTAGCTCCGGAAGAGGTTAAACAAACCTCTGAACTAAGTAAAGCAATAACCGATCAGGGCGAAAAGGTTTGGCAATGTGATCTGTGTGAATTTAGAAACCCTTTTCAATCGGAACTTCTTTATCATCGTATATTTCATTCTTATAGCAGCGTAGGTAAAAACCATTTACTACCATGTCCTTTATGTGACAAGTCATTTCGCAAGCAATCGTTGCGCTTTCACTTACACAatcatacaaaagaaaaactttttaaatgtgaTATCTGTAGTGCCTCGTTTTCACGGCCCAATAACCTTAAAGAtcatattaaaaacttacacAAAGAGGGAAATGAAGTTAACAAGAAATTAGCTGAAACTGAAAAAGAGACTAAAGATGCCGAAGGTGCCAAGAAAACGTTTCCTTGTACTTCATGTCAAAAGGTTTTCAAGAGCAAGTAA
- Protein Sequence
- MNHGLDDTHLCIKCSDTIVGLENYIQHRKQNCSLATKSSNESSAKTTPSTSSTTTQQQSAEVTPQHTPAITYEPFNFSEPEPPNPASHGGKTSKSLSESYELPYELEADVFFSSLQLQSVQSSVGQNVPSASGGKTGSTQQQNAPLTRQKSLQQETSAEESWINTHSSETPHQSGETFLKAVVSEMGETKKSYETLFKYEHESPEMSEEEDEDDMDDDDDEDYDPMAEAHGSGGKWKLPLMRHSPPVVPVSHTGGKWRPEQRPNLRVAHSQLTRVSPSWDDIDGQEGQHPPSDHTKGKWVPGTKMQRLEYKEVVELAKCSNTNQDYWCNICCRKLKSKIIYENHLKTSYHLKRAEPEVQLEKAAIEEVPRENINKSLPIMEFNPLSITVSANTKKRNRRSTYLKCSLCKHVMTRHFIGKHLISHYHYRRMQQHPGISLNVILDNIHAIVLQSPFQCRTCYFYANTEEAFLLHWNSASHLDASEGPGRFWCSYCQFECEDNNQMRRHLLGPEHKEVLLAINRSVPVCISKRLSIDCPKCGQTFRFNFELRRHILNIHRATEFMGSASDVYQSKFRCDSCPEVLPSKIALQRHEKFKHSISKYFCSICTLEFNSPCKARRHRKTLEHKQKALALNQKPIKEVEIKELFELKMERNSKPAPNEIVELEVQRVDEKPSTSTQAMQKLSQPTSSPAKISVKCKRCSFVSTSKDELKLHCHKEHINSLHCCILCCKNFTTAQELGRHSRVCKPATVVAPEEVKQTSELSKAITDQGEKVWQCDLCEFRNPFQSELLYHRIFHSYSSVGKNHLLPCPLCDKSFRKQSLRFHLHNHTKEKLFKCDICSASFSRPNNLKDHIKNLHKEGNEVNKKLAETEKETKDAEGAKKTFPCTSCQKVFKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -