Pmau007861.1
Basic Information
- Insect
- Paykullia maculata
- Gene Symbol
- -
- Assembly
- GCA_003055125.1
- Location
- NDXZ01021455.1:3023-6462[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0082 0.57 11.1 0.5 1 23 378 401 378 401 0.93 2 11 2.6 1.8e+02 3.3 0.2 2 16 408 422 407 424 0.86 3 11 5.9e-06 0.0004 21.0 1.0 1 23 463 485 463 485 0.99 4 11 0.00035 0.024 15.4 2.6 1 23 493 516 493 516 0.94 5 11 2.9e-05 0.002 18.9 2.5 2 23 523 545 522 545 0.95 6 11 0.008 0.55 11.2 2.2 1 20 576 595 576 597 0.93 7 11 0.0029 0.2 12.5 5.4 1 23 624 646 624 646 0.98 8 11 0.0042 0.29 12.1 2.2 1 23 653 676 653 676 0.97 9 11 3.6e-05 0.0025 18.6 1.0 1 23 682 704 682 704 0.97 10 11 0.049 3.4 8.7 3.4 3 23 711 734 709 734 0.93 11 11 0.0073 0.5 11.3 1.4 2 23 738 759 737 759 0.95
Sequence Information
- Coding Sequence
- ATGGATCAGCTAGAAGAACTGGAAGCATGTCGTATTTGTGTAACCTCttattctttaaaagaaatggattttattaatattttccagCCAAATAAAGAATTTCAACAAGAACTCGAATTTATACAGAGCGAAATACAACAGTGGCAGCTGAAAATACAAGCTAACGATGGGCTGCCACAGCGCATCTGTGCCAATTGTTTTGCCAAATTCTGCAGCATTGAGGCGTTTCGCACGGAATGTGAAGTGGCTCAGAAAAAACTGTTCAACGCCTTAACGCAACATACAAATAACAATGAGCCGTCAgatttggaaaatattataaaaactgaAGGAGGCCCTTTACCGTTAGTGGGCAATTATGACACGGGCACTATTGTTTTAAACTCCAGCAATAATATCCTTATGACTTCGGTAAATTTAACACAATCGGATGTTTCCCTCAATGACTTCCCCGTGTTTGATCATCAATTTTCACATTTTGACAATCCCAATCTAATGGATGCCTCTTCTACTTTGTTGGATAGCAATCTTATTGCCGCCGAGACTTCTCAAGAGTTAGATTTTTTACCGTcacaaaacctttttaaatttgagaCTGCCGAGCCACCCTCTGCGGGTACACTGCCTCTGGAAGAGGCTGATACGACGTCGTCCCTTATAAATGGTATTCTACAGAATAAGCCGAATGCGAGTCAGGAAAATGCCATTAAAGAGGAAAATGCCATTAAAGAGGAAAATATCTTACAAAACAGTATTATTATACCAACTGCTATAAAATTACCTCTTCAAAAAACGCACCACAtcgttgaaaaacaaacaaataagttAAGCGTAGTGACTAAAAAATACGATGCAAATGCTATAACAGAGAATGGGAATCAGTATAATAACAGTCATGAGTTAAGAAGAAGAAacgATTACCAAAATACCACAGTTACATTTTTGCAACGGGAAGACTCTAATTCCGATATCGAATGTGATGATTCGGATATGAATGCCCGTTTAAAGGGCTTATCTTATGCTTGTTATTATTGCTTCTGTCCTGACACTGGACCCATCAAACATCTTGTCTTCCCCAATGAAGATACACTCTCACAGCATTTCTTCGATGTGCATGATCCTAATCGGCCCTACACTTGCCCCAAATGTCCACAATCATACAAGACTCAATTGCTACGTGACAATCACGTAAGACTTATTCACAAAATAATTGACGTTCAAACCTGCACTTATTGCGAAAAACGCTTAAAAGGCTCTGCAGATCTCCATCAGTTTAATTGCCAATATGTTGGCAACTGGGAGTGCCAACATTGCCGAGAGAAATTTGCCAATACACCCCTCTATCGTTTTCGTTTGCATCAGCGTCAACACGAACGTATGAAGCAATTCAAATGTCGTTTATGTGAACGTACTTTTATGAGAAAGGCTAATTTAGAAGCTCATCAAATGATGCACAAAACAGAAGCACAGACTACACACTCGTGTAACGTATGCAAAACCACTTTTATTGATGAGTATGAGCTTAAACGTCACAAGCAACTACAACACAGTGCTGAATCTCCTCTTAAATGTAATATTTGCCATAAGGGCTTCTCTTCGAATGTATTTTTACAACGCCATATTAATCAGTTTCATCCAGGCAGtgaaaagaacaacaacaatagcagcaATGTCCCCTCTATAATAACAACATCATCTTCATCATCCTCTACAAATTCAGAGCAACATGTATGTGTAAATTGTAATATGTGCTTTAAGACTTTGCAAAAACTGCAAAATCATTTGTTATTGGGACGAGATAAAAGTGGCAATTGCTTGTACAGTTCGTGCAATAAACAGGAACGTCGTAGGTTACAGCGTCAGGGTGTATTTCCTTGTTTCCATTGTCCCAGACGATTTCATTTGAGGTCACAACTTGATAAACACTTAAATACACACGATGCTCGTTTGCGACCCTTCCAATGTGAACAGTGTGTCACACGTTGTCGTAGCAAATTCGAGCTAAGGCAGCATGTTAATATCGCCCATTTGAATATTAAGGCGTTCACGTGTGACAAATGTGGTAAAAGTTTTGGTTACAAAAAGGATCTAGGAGATCATATGCTTTTCCATGCAGaaatcAATGTCCATTGCACCCTGGAAGGTTGCGATTATGTGTGTAAAAACGAAAAGGCTTTGAATGATCACATACGTCACAAGCATCGCCTAGTATCCTGTGAATATTGTCACGAACAATTTTCAAGGCAAAAATTAATAGCTCATTTGCGGAAAATACATCGTGCCCAAATAGACGTAGAATTGGCCGGAGAATCTGATAACTATTATAAATCTCAATTACTTAATAATAACAATGATATAACACAAATCTcgtttaatttacttaatactCAACAACCCGAACAACAAACgcaattaacaaaaacttcacaACAACAGCCATCCTCATGCAAAACATCTTCTTCACCAACGTTAAATGCGGTTGTTAACAGTATTCAGCTGCAAACGCAAACATCCATAGAACCTACATCAATAACATCATCATCGTGCTCATTATCATCCTCATCAGCAACTTCATTATTGGATGCTACCATTTCATCTACTTCTACAACTTTATCGTCTTGTTTAACAGAGTCCACAAAAGATAATAGTTTAGTTACTAACCCAACTTCTATTTCCACACATTGTATGATCAATAATAATGTTGATCATCATCATGATCAATTGTGTGCCATGTTTGTTAATGACACCCATGATACAAATGGCTCTACATTGACATTAAATGGTATCGTGTCCAATGAGCACGATTTGAATTTGGTTGCTAGCGATGCTGATAACATGTTTTTAGTACCTTCAGCATCTACACCTACAAATGACAACCATTTGGATCAGTATTTTATGGCCTCTTTAATTGATACTGAACAGGAAATAATCGTAACATag
- Protein Sequence
- MDQLEELEACRICVTSYSLKEMDFINIFQPNKEFQQELEFIQSEIQQWQLKIQANDGLPQRICANCFAKFCSIEAFRTECEVAQKKLFNALTQHTNNNEPSDLENIIKTEGGPLPLVGNYDTGTIVLNSSNNILMTSVNLTQSDVSLNDFPVFDHQFSHFDNPNLMDASSTLLDSNLIAAETSQELDFLPSQNLFKFETAEPPSAGTLPLEEADTTSSLINGILQNKPNASQENAIKEENAIKEENILQNSIIIPTAIKLPLQKTHHIVEKQTNKLSVVTKKYDANAITENGNQYNNSHELRRRNDYQNTTVTFLQREDSNSDIECDDSDMNARLKGLSYACYYCFCPDTGPIKHLVFPNEDTLSQHFFDVHDPNRPYTCPKCPQSYKTQLLRDNHVRLIHKIIDVQTCTYCEKRLKGSADLHQFNCQYVGNWECQHCREKFANTPLYRFRLHQRQHERMKQFKCRLCERTFMRKANLEAHQMMHKTEAQTTHSCNVCKTTFIDEYELKRHKQLQHSAESPLKCNICHKGFSSNVFLQRHINQFHPGSEKNNNNSSNVPSIITTSSSSSSTNSEQHVCVNCNMCFKTLQKLQNHLLLGRDKSGNCLYSSCNKQERRRLQRQGVFPCFHCPRRFHLRSQLDKHLNTHDARLRPFQCEQCVTRCRSKFELRQHVNIAHLNIKAFTCDKCGKSFGYKKDLGDHMLFHAEINVHCTLEGCDYVCKNEKALNDHIRHKHRLVSCEYCHEQFSRQKLIAHLRKIHRAQIDVELAGESDNYYKSQLLNNNNDITQISFNLLNTQQPEQQTQLTKTSQQQPSSCKTSSSPTLNAVVNSIQLQTQTSIEPTSITSSSCSLSSSSATSLLDATISSTSTTLSSCLTESTKDNSLVTNPTSISTHCMINNNVDHHHDQLCAMFVNDTHDTNGSTLTLNGIVSNEHDLNLVASDADNMFLVPSASTPTNDNHLDQYFMASLIDTEQEIIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -