Pmau016693.1
Basic Information
- Insect
- Paykullia maculata
- Gene Symbol
- -
- Assembly
- GCA_003055125.1
- Location
- NDXZ01013801.1:567-4734[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.32 22 6.1 4.0 3 23 20 41 18 41 0.92 2 15 0.064 4.4 8.3 0.9 2 23 414 436 413 436 0.94 3 15 9.7e-06 0.00066 20.3 1.3 1 23 443 466 443 466 0.97 4 15 0.00014 0.0097 16.7 0.3 1 23 471 493 471 493 0.98 5 15 0.0016 0.11 13.3 0.6 1 23 499 522 499 522 0.88 6 15 0.00016 0.011 16.5 1.5 1 23 528 550 528 550 0.99 7 15 7.3e-05 0.005 17.6 3.6 3 23 558 578 557 578 0.97 8 15 0.005 0.34 11.8 1.7 1 23 584 607 584 607 0.98 9 15 0.096 6.6 7.8 6.9 1 23 716 739 716 739 0.95 10 15 6.2e-06 0.00042 21.0 1.2 1 23 746 769 746 769 0.98 11 15 0.0011 0.079 13.8 0.1 1 23 774 796 774 796 0.97 12 15 0.00052 0.035 14.9 0.5 1 23 802 825 802 825 0.90 13 15 0.00068 0.047 14.5 1.6 1 23 831 853 831 853 0.99 14 15 5.9e-06 0.00041 21.0 1.4 3 23 861 881 860 881 0.97 15 15 0.011 0.75 10.7 1.4 1 23 887 910 887 910 0.97
Sequence Information
- Coding Sequence
- atgatTCTTTGCGGAAATGTATTCATGGATGAATTAAGCAACACATTTTCATTATGTTGTGTATTGTGCAAAAAGAAATCTCGGCGTTACACGGAATTTACAAGTcacataaaagcaaaacataaaaCCCTTAACAAAAAGGAAGCCACACCACAACGGCAGATAGTGAAAAATATTAAGCATGAAGACGACAGTGACGACGACGATGATGGCGACGACGACTATATCCAAACAGAGAAAACTAAGCCAGAAGTCGAAATTAAGGATGAAATGGATGTCGATGCACTGGAAGAGCTTACTGATGATATAAAATATGACGTGCAAGAACTTGAAcctTTTATTGATCCCATATTGGCTTTAGAGGAAAAGGGTAGTGCAGATTCCACAAATTTATTAGATACTATAGATTCGGATGCAAAAGATGAAGATTATGTTCTCGATGAGCCAGACAATGATGAATCTGAAGATGAAGATTATCGTGATGAAGACGACAAAATCGATGATTCTGAATCCGATGATAACGAAATTCCAGTTACCACAGAAAAGTTTACTCCAACTTTTTATcgtaaaaaaagatttgttagTGAGTTTATAGAACTATATAAAAGTCAGCCGATTTTGTGGGACATAAATGATCCCCTATTCGAAAATCCAAAAGCAAAGAAGGATGCTGAACAGGCCATTATTAATGGCatgcataaatttaatatattcttaaaaCCAACAGCATTAAGATCCGCAATAAATCAAGTGCACAAGTAttgtgaaataattaaaaccGATTTGGATAACGGCGATACTAAAAAAATCACTTCAGTAGCTAAAAGTTATTACGAGAAATGTAATTTTCTTGAAGACTTACTAGCTAGAAAAGCTAAACCGGAAGaagataaacaaaaatgtCCATTAACATTCAAGCAATGGGATGATAACACTTCTAAATTCATCGAAGCATACGCAAGATTATCGGTCCTTTATGACACAAAACACCCGTCATTTCATAGTCCCGAAGAGAAACACAAAGCTTTAAGCGAACTTAACCAAGTCATGATAAATCAGCACAATATAGATTTTAGTAAAGAAGTCCTGTCGAATGCCATTAACCAATTCCAGACGTGGTTTTACGACACAAAACGGCGCAAAGGAAACCGGTACAAACTCACAAGTAGTTGCGAAGATAAATATTTTGACATGTGCAAATTTATGCCTTCAAAACAATTGAAACTAAGACAAAGATTATCGTGCGACTTGTGTAATAACGTTTTCTATGCGGAACACAACTTAAAACTGCATCTCTTTAAAGCTCACCAGATAGGAGATTTGCCATTTAAGTGCGAACAATGTGACAAAAAGTTTGactcaaatttttatttaagagttcATATACTGCGCGTACATGTAGGCAAGCAGTACTCCTGCTCCTATTGTGGCAGGAAATTTGCCATATTGTCGGAAATGAAGATTCACGTAAAGATACACACAGCTGAGAAACCACATGTCTGTGAGCTTTGTGGCAAATCGTTTAGATTGAAAACCCAGTTGGGCTATCACGTCACAGCGATACACACAAAAATTCGTGCTTTCAAATGCACCATGTGTCCAAAGGACTTTTTAAGGAAACGCGATCTCACCGATCACATCAAATCTCATCTGAATATACGCGATAAAATTTGTGAGACATGTGGCAAGGGATTTTCGAATTGTCATTCATTGATTCGTCACCGTCAAATACATTCGGCGGTAAAGAAATACGAATGTAAACTATGTGATGCCAAATTCCATCAGTTCGTTGGCCTTAACGGTCACATGAAACGCACCCATAACATCAAACCATTAACGCTCATACAATGGGATGAAAATACTTCGACATTCATCGATGCatatgcaaaatttcaacttttaTACAACGGAGAGCATCCATTGTTTGGTAATTTAGAGGAAATACGAAAAGCTCATTGCAATTTAGCAAATGCCCTCAAAACAGAACATAGTATAGATCTTAAAGACGATAGTTTAGCATCAGCAATAAGTCAATTGCATTCCTGGTACTACGATGCCAAATGCCGAAAGGCAAAATTAAACAAGGATGAAGAGAAATATTTCGAGAAATGTCACTTTTTGCcacaaaaacgtttaaaaacaaaattttattgtcacTTGTGCAAGAAAAACTTCAACACGGAGCACAATATAAAAGGCCATCTGTTTAGGTTCCATCAAATAGGCGAACTACCCTTTCAGTGCGAACAATGCGGAAAGAAATTTGAAATCAAGTCGACCCTTACAACACACATTCAAAGAATGCACGTCAGTAGAAAATTCCCTTGTGGTTTCTGTGGGAAACTCTTTGCCATAAAATCGGAACTTAAAGTTCATAATATGGTGCATACGGCGGAAAAGCCACATGTCTGCGAACTGTGCGGCAAAGCGTTTAGAATAAAGACTCAATTGCGCTACCATGTTACAGCAATACATACGAAAATTCGAGCCTACAAATGCACAATGTGTCCTAAGGATTTTCTTAAGAAGCGCGACCTAACGGATCACGTTAAGACCCATTTAAATATACGCGACAAAATATGCGAAACATGTGGGAAGGGCTTTTCGAACAGCCATTCGTTAATACGACATCGTCAAATACACTCAGAAGTTAAGCGATATGCATGTAAATTGTGCGATGCTAAGTTCCACCAGTTTGTCGGTCTCAACGGTCACATGAAACGCACACACAACATTGTTAAAAAAGattcaatttttgtattaaaaaaaaaagaaacgcaataa
- Protein Sequence
- MILCGNVFMDELSNTFSLCCVLCKKKSRRYTEFTSHIKAKHKTLNKKEATPQRQIVKNIKHEDDSDDDDDGDDDYIQTEKTKPEVEIKDEMDVDALEELTDDIKYDVQELEPFIDPILALEEKGSADSTNLLDTIDSDAKDEDYVLDEPDNDESEDEDYRDEDDKIDDSESDDNEIPVTTEKFTPTFYRKKRFVSEFIELYKSQPILWDINDPLFENPKAKKDAEQAIINGMHKFNIFLKPTALRSAINQVHKYCEIIKTDLDNGDTKKITSVAKSYYEKCNFLEDLLARKAKPEEDKQKCPLTFKQWDDNTSKFIEAYARLSVLYDTKHPSFHSPEEKHKALSELNQVMINQHNIDFSKEVLSNAINQFQTWFYDTKRRKGNRYKLTSSCEDKYFDMCKFMPSKQLKLRQRLSCDLCNNVFYAEHNLKLHLFKAHQIGDLPFKCEQCDKKFDSNFYLRVHILRVHVGKQYSCSYCGRKFAILSEMKIHVKIHTAEKPHVCELCGKSFRLKTQLGYHVTAIHTKIRAFKCTMCPKDFLRKRDLTDHIKSHLNIRDKICETCGKGFSNCHSLIRHRQIHSAVKKYECKLCDAKFHQFVGLNGHMKRTHNIKPLTLIQWDENTSTFIDAYAKFQLLYNGEHPLFGNLEEIRKAHCNLANALKTEHSIDLKDDSLASAISQLHSWYYDAKCRKAKLNKDEEKYFEKCHFLPQKRLKTKFYCHLCKKNFNTEHNIKGHLFRFHQIGELPFQCEQCGKKFEIKSTLTTHIQRMHVSRKFPCGFCGKLFAIKSELKVHNMVHTAEKPHVCELCGKAFRIKTQLRYHVTAIHTKIRAYKCTMCPKDFLKKRDLTDHVKTHLNIRDKICETCGKGFSNSHSLIRHRQIHSEVKRYACKLCDAKFHQFVGLNGHMKRTHNIVKKDSIFVLKKKETQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01376803;
- 90% Identity
- -
- 80% Identity
- -