Pmau010516.1
Basic Information
- Insect
- Paykullia maculata
- Gene Symbol
- -
- Assembly
- GCA_003055125.1
- Location
- NDXZ01005226.1:1-2373[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-19 2.4e-16 59.5 0.0 2 45 78 122 77 122 0.97 2 3 1.6 3.8e+03 -1.9 0.9 3 13 155 165 154 169 0.84 3 3 1.6 3.8e+03 -1.9 0.0 29 44 264 280 264 281 0.87
Sequence Information
- Coding Sequence
- GGTTATACCAATGCGGCAGCCGCTGCTGTAGCGGCGGCACAAAATTTATCACCGCCCTCGCCTAACGACGGCAATATGGTGCAATCAGTATACAGTCAAGGACCTACGCCCATCCAATCGCCGGTAGGAAATGCTTCAGGCTCTGGCGGTGGCAGCAACATGTCCGGCAGTGGTAATTCAGCTCACAACAATGCCAATATCAAACGCAAGCGTTCGGTGAACCCACAAGGTGATGAAAATTTTATACGGGCCCTGGAGGCAGTGCGTTCGGGTGGCATAggtttttgtaaagcagctcgTCTATATGGCGTTAACAATCGTACTCTGTGGCTGGAGTATAAGAAGCGCGGCTATCCTGTATCCAGACCCAGTATAAAATCACGTGTGGTCAAGCAAGAACCGAATCTCTCACCCTCCCCCACACCACCTACTAATGCCACAGACGACACCAATGAAAACTACGATCACATGGCAGCAGCTGTGGCGGCTGCACAAACAGCAGCACTTAACATGCAAATACCACCGACTTCCGAAACACCGACACCCTCGTTAATGTGTACACCCCATCATGCTGGTACAGCCGCCGGCGCTACCACACATCCCACAATGGGTGTTATGAGTTTTTTGGATACCCGCCACATGGACTTCCCAGCTAGCCTGCATTCAATGTCACGTCAGCGTTATATTGATGCCGGAGCTGGCAGTGGGGCCGGTGCGGGCACTATTAATAATTCAATTTCTACATCCTCGGCACATTCTGCGACGGTGGTGGCTGCAGAAGCGGcagcaccaacaacaacaattataccCATGCATTTGGAACATCATCctcagcaacagcaacaacatcataGTCATCAGCAACACCATCCGGCGCATCCTGCACCACCGCTAATACAACCATCATCAAGCCAACCATCCCATAACACAACAAACACTTTATCAACAGTTACGAGTAATGCTGCTGCGGTTGCTGCAACAGCACTTCTCCAACAAGCAACTCTATCGTGTGATACTCAAACGCCAACCGCTGCAACCCATCATAGTCTTGTTGCATCGCAACCTCAGGCTACcacaatatatgtacaaaacTATGCCACAGCCACACCGATAATAGTACATCCAAGCGATAATGCCACCACTACATATATGGCCAAGCTAACAGCTTTACCACCGTCGTAG
- Protein Sequence
- GYTNAAAAAVAAAQNLSPPSPNDGNMVQSVYSQGPTPIQSPVGNASGSGGGSNMSGSGNSAHNNANIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPTNATDDTNENYDHMAAAVAAAQTAALNMQIPPTSETPTPSLMCTPHHAGTAAGATTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDAGAGSGAGAGTINNSISTSSAHSATVVAAEAAAPTTTIIPMHLEHHPQQQQQHHSHQQHHPAHPAPPLIQPSSSQPSHNTTNTLSTVTSNAAAVAATALLQQATLSCDTQTPTAATHHSLVASQPQATTIYVQNYATATPIIVHPSDNATTTYMAKLTALPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -