Prec032639.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- LdOrf-130
- Assembly
- GCA_963082625.1
- Location
- OY720259.1:11939391-11963682[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0032 0.34 12.6 3.1 1 23 1668 1691 1668 1691 0.96 2 9 1.4 1.5e+02 4.3 7.0 1 23 1698 1720 1698 1720 0.97 3 9 0.0011 0.12 14.1 4.4 2 23 1752 1773 1751 1773 0.97 4 9 0.0017 0.19 13.4 0.3 1 23 1777 1800 1777 1800 0.97 5 9 0.47 50 5.8 0.3 2 19 1814 1831 1813 1833 0.93 6 9 0.022 2.3 10.0 1.3 3 23 1867 1888 1865 1888 0.92 7 9 0.0034 0.36 12.5 0.1 2 23 2283 2304 2282 2304 0.97 8 9 0.0003 0.032 15.8 1.2 1 23 2310 2332 2310 2332 0.98 9 9 0.00039 0.041 15.5 3.1 1 23 2338 2360 2338 2360 0.98
Sequence Information
- Coding Sequence
- ATGTCCACCACCATGGAGGATCTCTTGGCAAATCAAAGCCAAATCATCGGAATGCTGAATCAGCTCATTAGCAACTTCAAGAAGGATGGCGCTGATCGGAAAACTCAAGCATACATAAAGAAAAGGCTGAGCTCTCTAGAAACATACTGGCATGAGTTTCAGTCCAATCATATAAAATTATGCGAATTTGATGATAAATCGCATGAATATTTCACTGGTGATGCTTATAAGCGAACATCAGAATTTTACATTGAGTCACGTGCACACATGCAAAAATACTTATCCTTTGACACTAAGACAGAGGAAAAACAATTTCTGCGTCCTGCTACACCCCTAGCAGCAGCAGGGGGGCATGCGTCGCCGTGTCCCGGGACGTCGGAACCGTGGCAACAGCCACCATCGTCCGAGTTTCAAGCTCCACGCAGCAGCGGCGGGCAGGGAACCAGCAGCAAGCTGGATGAGATGCTACGAAGGCAGCAGAGTAACTTCAAAGCATTTTCTAGGACGATCAATTTAATATGCATCGACGAAATCACCAGCAGGTGGCAACTCGAAGATTCTCTAAGGTCAGTGCAAGCTCGTTGGTCTGTAGTTGACTGCCTTCATTGGGAGATTGATAGCGAGCTGTACGAAGAAAACTTCGAGTACGAGCAAAGCTATAGTAGATATGAACAacagtttaataatataaaaatatctcttaATGAGAAAATGTGGTCGCAATGTCATCAAGAAAGATCGACACCACAAATGGATATACCTACCTTCAATGGGAATTTTATGCAGTGGGTATCCTTCAAAGATTTGTTTGTAGAGTCTATACACAAGAATCAAACTCTATCGAACGCCCAAAAGATGCAGTTcctcaaaagtaaaataaaaggcGAAGCTGAAAAATTAATACAACATTTACCTATCAGCTCCGAAAACTACGAGGTAAGCTGGGAAATCCTTACACATCGTTATAATAACGTAAAATTGATTTTCAACAGTCACATGAATACCTTGACAAGTTTACCAACGTTGCAGCAGCAAACGGCAGCAGCCGTCAAAAAAATCTATGATACCACCAACGAGTGTCTAAACGCTATAAAGGCCCTAGGAGTCGACATAAGTACTTGGGACCCAATTATCGTTTACCTCATCACGAACAAACTGGATGCCGACACTCATATCGACTATATAGAGTCCTTAAAAAATCCTAGAGATTTACCTACTCTGAAAGATCTAGTAGAGTTTCTTGAGCGGAAATTTACGTCTTTGGAAGCATCCAAACGTAAAGGAGAGTCTCCAAAACCTCAGCAGCAAGAACCATCGACTAACAAAAAGACAAATTTCTTTAAAGCATTTAccagtaacaaaaaaatacaaaactccGATAGCGATGAACCTAAATGTTTAGTTTGTAACTCAACAAAACAACACGGCATATTCAATTGCGAAAAGTTCCTGGAAATGAAACCCAATATGAGGCTAAAGACAGTTGAAAGGTTGTCCATATGTAAAAGATGTCTTAGGTCCCATCGTAATAAGAAATGTATTTCAACCAAGAAATGTCGTGAGTGCGAGGGAGAACACAATACCTTATTGCACAACACAACCAACGATCAAATTTCTTCCGAACCGAGTGAAGCAAAAGGTTCTCAGCAGAGTCAGCAGTCAGGTGCACACGTTTTACAAGGAAAAACGGGTGAAATACTTCTTGCAACTGCGCTAATAAATGTCACCAAGGCCGATGGAACTCACCAAACTCTACGAGCGCTAATCGATCAGGGCTCACAAACATCCTTGATTTCAGAAAACGCAGCTCAACTTTTAGAAATCAAACGAAAAAGATGCAAAGGGATAATTTTTGGAGTAGGGGCTAAAGAAATGGTTTGCAAAGGCATAATTGACATTTCAATCTCATCTCTTCATACCAACTATGAATTGGACATCGAGGTATACATTATGAAACATGTCGTCAACAATTTGCCAAATCAAACGTTCACGAAACCATCGTGGGCCCATATAGAGGACATTCAGTTGGCTGATCCAGAGTTTTACAGAAGTCGATCTGTGGATCTATTGTTAGGCGCAGACGTCTACTCAGAAATAATAATGAGTGGTATCATCAGAGAAAATCCGTCCATGCCAATCGCTCAGCAGACGCGTTTGGGTTGGATATTATGTGGTAGCACAAATATCACTAAATCATTCCACTGTAACGTGGTTCAAACAGACGATAGTGACCTATCTAGATTTTGGTCTATGAAAGAAGTCCCAGATCAACATAACATGTCTACAGAAGACATACAGTGCCTAAAACTGTACAAAGATACGACGGTACGCCAGGCAGATGGCCGGTATCCCGCAGCAGCAAAGGCTGTTGAAGACCAGTTCTACATGGACGACCTACTGAGTGGATCCCACAGTATAGAGTCTGCACTTGAACTAAAATCGAATCTGATCGCACTCTTAAAAGCGGGGGGTTTTAATCTTCGCAAGTGGGCTTCCAACGAGCCATCATTACAGGATAATGATACGTCATCTCAAGACACCTTCGACTTTCGTCATCAGGAATCAACCAAAACATTGGGACTTACCTGGAAAGCTGCGGAAGATGTCTTTACTTTTAAATGCAAGATGTCTTTACCGAAATTGGAGCTAAGTGGAGCGCACCTATTAGTAAATCTAATGACCAAAATCTCAGAGAGCTTGAACGGTCACAAAATCGAGTTGTACGGCTGGTGTGACTCAACCGCAGTACTAGGTTGGCTAAGTGGAGAACCAAGTAGATGGAAACCTTTTGTCGCCAACAGAGTCATAAAAATAACCCAGGTCATGCCTTCAAGGTGCTGGCGTTACATTAAATCTAAAGAAAACCCAGCAGATTGCGCTAGCCGTGGTCTATCAGCCAGTGAACTCCAAAATCATATGCTCTGGTGGACCGGCCCTACCTGGCTATCATcattcaaaaaagaaaataaaaaagtcgtaTACGATACTCAATTAGAGACAAAGAATGTGAAACAGTCAGTCAATTCGATACGAATAGATAACACAGTCAACGGCGCTTACAACGTTACTTCAGTTCAGAGTAACAACAGTATATACTTTGACAAGATATCTGACATGAGAGTAATTCAAGACAAGTGGAAACTTATAGTATACTACAACATGGAACCGTACTGgaaagaaactaaattactGTCTGCCCACTATCAACATCTTGAGGAATTATGCTCACAGTTTAAGGAACGGAAATCCCACTGTGACATCATACTGCTCCAGCTACGTCAATGTTTCCGAGAATTagagtataataattatttactacaGCACGGTAATAAGAACACTCGAACTAAAAGAGGCCTTATCGACGGAGTAGGTAGCATCGCAAACAGTTTGTTCGGCGTTTTGGATAGCCAGTTCGCAAAGCAATACGAGATTGACATTTCCAAACTAAGAGAAAACCAAAAGCATTTGGCTACTCTATGGAAAAATCAGACCTCAGTCATAGAAGCGGAAAATAATCTTTTAAAAAGGATCGAATCCACATTAGAAAAACATGACGACCAATTTGCTAAACATCTAAAGGAGTTGGAACAGGCAGAAGTCAAATTAAATGACGCACTTGTCAGGGTAGAGACTGTTGATGAATTCgttatatccagcattattgcCAATAGTATCTACGTAAGTCTCAAGAACATTCAAGACGATTTGCTGGGTACCATTATTAACTCTCATGAATTCAACGTGCATCTACTTACACCAACACAGTTTCGCGAAGAGCTCGGCATCATATCTGGACAGTTGTCTAAGGACTTATCTCTGCCTATAAACAATATCCATTCAGATCTTACAAAACTTTATAAGATTCTTCAAGTTAGAGCTTGCATGACTTCACAATACTTCATCCTCGAAATACAGATACCTTTGGTGAATAGAGACAATTACGAGCTATTCAAGTCCTACTCAGTCCCGCGACAAATTGGGAATGCAGTTGTCAGCATATTGGCAAAGGCGGCTTATTTTGCAATTAACCTACAGAAAGATACCTACATCCCGATTTCGGAGAATGAATTTTACCAGAAGTGCACTAACTTTGAAGACAATTTACGTTTATGCAACCTTCAGAAGCCGGTGTATCAAAAGGCAACTGGGGACAATCTATGTGTCAAGGATAATCAGAAAGACCaatgtaaaacaataataagcaCGTGTCAACCTACTTGGACGGAGCTTATCAATGTAAACACATTCATACTCACCTGTTGCGGTCAATGCCCTGTAAGATTTATCTGTGGCTATCAAGTTACACAGAAACATTTGCCAGGTGTGAGTATTATAGCACTAGGAAACGGCTGCGTCATCAAGGGCGAGTCCTTCACTATTACAGCACATAAACAACACGCTAGCAATTTGAATATTGAGCCAGACCTATATCCGATTGAGATCGCACCCGTCAATACCATCATAAATCTGACGATCCCGATCAGTCATATAGAAGAGAGCAACAGCAACTTCAACAAGTCGGTCGAGCTGATAGACCAGCGCATCGCCGAGTTGAAGGCAACAGCGGATCAAGTGGAAGTGGGGAACGAGATCTCCTCTCACGACGTACACCACTACGTCGCCATCTACACCGTGGCAGCTGCAGCGGCGGTCGTCGGCGGGCTCACCTGGTGGCGAgcacgccgcgccgccgcctcctCCGCCAGGCAGCCCGTGCCAGCAGTTGGTGCAGCGCCCGTTGCTAGTAGTATATCCAAATGGGATCGCTTACCAAAATGGTTTTGTTACGAGTGTGCAGCATTGCTGTATAAATTCTATGAGTTTAAGAAGAGATGTCACAATGGACAAAAAGCATTCAAGAAACTCTTGGAGACAAAATCtAGgtcagtaaaaaagaaattcCTCGACGAGAAACATTGGAAGAAGATAACCTTGACTGATGAGGAAGCTTCTCGACGGTTCCAGGCGAAGGCATTGGAACAAAAGTATTTGAAGGCCGACTTCAAATGTACAGATTGCTATAGAACATTTTCACAGGAGGATATGAAGAAGCGGCATGTAAAGTTGAGGCATTGTGAGTCGCTGGGGCCACACGAGTGCCGCCACTGCCGTATGCGATTCAAGTGGAAGTCTCGACTGCAGAAGCATTTGAAGGAACACTTCACTATCTTTAAATGCCTGAGATGTGAATTGTCTTTTCCCGTTGAAATATCTGCGTTCCAACACGACTATTCGCACAACGGAGTCACGTGGACCTGTGCTCACTGCGGACAGGGATTCAGACACAGTTCCACATACTACACCCACTTGAGGAAGCATAAGAGTAAATACGTGTGCACTCTGTGCGGCGTCTCGTTCGTCAGCGAGTTCGGACTGTTCATGCATAAGCGTGTCAAGCATGTCATTAACGAGGATACCAAAGAAGAAAGCTCCAACACTTACTGCAAAGTGTGCGACATTAAATTCGACACGTTGAAAGGGTTTAATGAACACTTTGCCGAATCGGCCTTGCACGCCATTGAGGTAGCTGATGGCGCAACAAGTCTGCCGCTAAAGACCAAGTGTACGAGACGGCGAGTGCCCAGGATATCCACCAACTGTAATATTTGCCTGCGCGCATTCTCGACGTACTCCGCCTTCTCCAAGCATCACGCGCAGGCGCACGCGGGCGCGCCGCTGCAGCGCGCGCGCGAGGGCACCGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACCACCACGCGTGTCGCACCGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACCACCACGCGTGTCGCACCGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACCACCACGCGTGTCGCACCGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACCACCACGCGTGTCGCACCGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACCACCACGCGTGTCGCACCGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACCACCACGCGTGTCGCACCGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACAACCACGCGCGTCGCACGGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACAACCACGCGCGTCGCACGGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACAACCACGCGCGTCGCACGGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACAACCACGCGCGTCGCACCGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACAACCACGCGCGTCGCACGGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACAACCACGCGCGTCGCACGGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGCTAGCTGTAAGTACACACGTGCCAACGTACAACCACGCGCGTCGCACGGACGGACAGAGGCAGGTCTGCGAAGTGTGCGGCCTCACGTTAGCTAGTTCGTGGTCGCTGCTTAACCATTTGAACACTCACTCGCGCGTCCGACTCTTCACGTGCAAGACGTGCGGCCTTCAGCTCAGCTCCAAGAGTGTACTCCAGAGGCATCAGCTGACGCACACACACGACAAGAGTTTCTCGTGCGACCGCTGCGAACGGAGGTTCACACACGGCTCGGGGCTCCGCCTCCACATGAAGACGCACGACAAGAAGCACGCCTCCACAAGCAGAAAGAGGAAAGCGGAACCAATAGTGATGGAATACTTCAAGAACTATGGACAACTTCACTAG
- Protein Sequence
- MSTTMEDLLANQSQIIGMLNQLISNFKKDGADRKTQAYIKKRLSSLETYWHEFQSNHIKLCEFDDKSHEYFTGDAYKRTSEFYIESRAHMQKYLSFDTKTEEKQFLRPATPLAAAGGHASPCPGTSEPWQQPPSSEFQAPRSSGGQGTSSKLDEMLRRQQSNFKAFSRTINLICIDEITSRWQLEDSLRSVQARWSVVDCLHWEIDSELYEENFEYEQSYSRYEQQFNNIKISLNEKMWSQCHQERSTPQMDIPTFNGNFMQWVSFKDLFVESIHKNQTLSNAQKMQFLKSKIKGEAEKLIQHLPISSENYEVSWEILTHRYNNVKLIFNSHMNTLTSLPTLQQQTAAAVKKIYDTTNECLNAIKALGVDISTWDPIIVYLITNKLDADTHIDYIESLKNPRDLPTLKDLVEFLERKFTSLEASKRKGESPKPQQQEPSTNKKTNFFKAFTSNKKIQNSDSDEPKCLVCNSTKQHGIFNCEKFLEMKPNMRLKTVERLSICKRCLRSHRNKKCISTKKCRECEGEHNTLLHNTTNDQISSEPSEAKGSQQSQQSGAHVLQGKTGEILLATALINVTKADGTHQTLRALIDQGSQTSLISENAAQLLEIKRKRCKGIIFGVGAKEMVCKGIIDISISSLHTNYELDIEVYIMKHVVNNLPNQTFTKPSWAHIEDIQLADPEFYRSRSVDLLLGADVYSEIIMSGIIRENPSMPIAQQTRLGWILCGSTNITKSFHCNVVQTDDSDLSRFWSMKEVPDQHNMSTEDIQCLKLYKDTTVRQADGRYPAAAKAVEDQFYMDDLLSGSHSIESALELKSNLIALLKAGGFNLRKWASNEPSLQDNDTSSQDTFDFRHQESTKTLGLTWKAAEDVFTFKCKMSLPKLELSGAHLLVNLMTKISESLNGHKIELYGWCDSTAVLGWLSGEPSRWKPFVANRVIKITQVMPSRCWRYIKSKENPADCASRGLSASELQNHMLWWTGPTWLSSFKKENKKVVYDTQLETKNVKQSVNSIRIDNTVNGAYNVTSVQSNNSIYFDKISDMRVIQDKWKLIVYYNMEPYWKETKLLSAHYQHLEELCSQFKERKSHCDIILLQLRQCFRELEYNNYLLQHGNKNTRTKRGLIDGVGSIANSLFGVLDSQFAKQYEIDISKLRENQKHLATLWKNQTSVIEAENNLLKRIESTLEKHDDQFAKHLKELEQAEVKLNDALVRVETVDEFVISSIIANSIYVSLKNIQDDLLGTIINSHEFNVHLLTPTQFREELGIISGQLSKDLSLPINNIHSDLTKLYKILQVRACMTSQYFILEIQIPLVNRDNYELFKSYSVPRQIGNAVVSILAKAAYFAINLQKDTYIPISENEFYQKCTNFEDNLRLCNLQKPVYQKATGDNLCVKDNQKDQCKTIISTCQPTWTELINVNTFILTCCGQCPVRFICGYQVTQKHLPGVSIIALGNGCVIKGESFTITAHKQHASNLNIEPDLYPIEIAPVNTIINLTIPISHIEESNSNFNKSVELIDQRIAELKATADQVEVGNEISSHDVHHYVAIYTVAAAAAVVGGLTWWRARRAAASSARQPVPAVGAAPVASSISKWDRLPKWFCYECAALLYKFYEFKKRCHNGQKAFKKLLETKSRSVKKKFLDEKHWKKITLTDEEASRRFQAKALEQKYLKADFKCTDCYRTFSQEDMKKRHVKLRHCESLGPHECRHCRMRFKWKSRLQKHLKEHFTIFKCLRCELSFPVEISAFQHDYSHNGVTWTCAHCGQGFRHSSTYYTHLRKHKSKYVCTLCGVSFVSEFGLFMHKRVKHVINEDTKEESSNTYCKVCDIKFDTLKGFNEHFAESALHAIEVADGATSLPLKTKCTRRRVPRISTNCNICLRAFSTYSAFSKHHAQAHAGAPLQRAREGTDGQRQVCEVCGLTLAVSTHVPTYHHACRTDGQRQVCEVCGLTLAVSTHVPTYHHACRTDGQRQVCEVCGLTLAVSTHVPTYHHACRTDGQRQVCEVCGLTLAVSTHVPTYHHACRTDGQRQVCEVCGLTLAVSTHVPTYHHACRTDGQRQVCEVCGLTLAVSTHVPTYHHACRTDGQRQVCEVCGLTLAVSTHVPTYNHARRTDGQRQVCEVCGLTLAVSTHVPTYNHARRTDGQRQVCEVCGLTLAVSTHVPTYNHARRTDGQRQVCEVCGLTLAVSTHVPTYNHARRTDGQRQVCEVCGLTLAVSTHVPTYNHARRTDGQRQVCEVCGLTLAVSTHVPTYNHARRTDGQRQVCEVCGLTLAVSTHVPTYNHARRTDGQRQVCEVCGLTLASSWSLLNHLNTHSRVRLFTCKTCGLQLSSKSVLQRHQLTHTHDKSFSCDRCERRFTHGSGLRLHMKTHDKKHASTSRKRKAEPIVMEYFKNYGQLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01161940;
- 90% Identity
- iTF_01161940;
- 80% Identity
- iTF_01161940;