Prec034454.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pasiphila rectangulata
Gene Symbol
-
Assembly
GCA_963082625.1
Location
OY720262.1:4128323-4137464[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 1.7 1.8e+02 4.0 10.5 1 23 227 249 227 249 0.97
2 8 0.26 27 6.6 1.1 1 21 255 275 255 276 0.94
3 8 0.0001 0.011 17.3 1.6 2 23 279 300 278 300 0.97
4 8 6.2e-07 6.6e-05 24.3 0.8 1 23 306 328 306 328 0.98
5 8 1.7e-06 0.00018 22.8 1.2 1 23 334 356 334 356 0.98
6 8 0.032 3.4 9.4 1.8 2 23 386 406 385 406 0.95
7 8 0.00026 0.028 16.0 5.9 1 23 412 435 412 435 0.96
8 8 0.00034 0.036 15.6 2.1 1 23 441 463 441 463 0.97

Sequence Information

Coding Sequence
ATGCACGACATATCAACCACCAGATATCGTGAAATCTTCGAGAAACTATCTGGGAACAAGCTCAGCATAGAAGATGGAAGACCAGAGACCATTTGCTTCATCTGCAATTCGCGGCTGGAGAGATTTTGGAGGTTCTTCGAGACTTCGCAGAAGGCTGAAAGAATATTTACGCAACGTCTTCTTTTTGGAAATGAGATGGGCGGTACTCtagacgcggcgctgcagcTAACGACGACTCCCACCAAATCCTTGTCGTTGCTGGATGACGGGACGTCAGCGGAGCCCGAAGTTACCGTCACCGTTAAGGAGGAGCCCCAAGACATGGACGACTGGGAACTGTTCCAACACCAGCTCATGGATTCACCATCGGCTCAAACAGAAATCGATGAAATTCAATCATACTTGCCAGACACCGAAATGACTGACACGGTAACAAAAATGGCTGACATAGAAACAAATATGGCTGACACCGATACTGCAATCAGATTTGAGCATAAAGAATCAAAGAATGAGCTCCTAGaagacattaaaattattaaaaccgAAAAAATAGATTATGAGATCGAAGAAACGCAAGAGAATCCAGCTATAGTTCTACAAAAAATATGCAAAGCGATAGAACAATTTCCATTAAAAGCAGATATGAAATACCATCCAAAGCAGAGCGCAGACGCCTTCTACCATTGTAGTAAATGCGACTATAGATGTCAACACGCGAAAACACTCAGGAAACATAGCAAATACCACGACCCAAATAACCAGTTTTCGTGTACATTCTGTTTGTACCGTTTCGCAGACGAGAAGAAGCTGGCGTCTCACAAGAATTACTGCACCGTGTGCAATATATGCGGTAAGAAGTTTCACAATCTAAACGGCTTGCGAACACACGTAAGGCTGCATACGGGTGAACAACCTTTTTCGTGCGACCTTTGCGGCAGAGGTTTCAACCAGAAGACAAACCTACAAACACATTTGAGAGTCCACGCGAGAGAAAAGCAATACCCATGTGAAGTATGCCACAAGATATTCCCCTTTAGCTCGTATTTGAAGCGGCATATGTTGATACACTCCGGAAATCAACTAGACGGCGAAAGTATACATCGGACCTTAAACTGCCATAAACTTTTCAGtcgtaaaaagaaaaataatgtgTGTATTTGCACTGTCTGTGGTAAGTCTTTGCGTAAAGATAGCATGTCTATGCACTTGAGACTGCATACCGGAGAGAGGCCGTTTTCTTGTGAAAAATGCAACAGATGTTTCAACCAGAAGTGCAACTTGCTAACGCATATAGAGAGGGTACACGCTGGCGATGACTTATTCTCTTGCAAAGTTTGCTTTAAGACATTCGCGTTCCATGCTGAGTTAACGAAACATGCGGCAACTCACGGTCTGAAAATAGAAATCAAACAAGAGATGCTAGTGCAAAGTCAGAAAACTATAGATAAGTTCGTAAACGATTATGACAGGATGGTAGACGGTAGGGTAAATGGAGAAGTGGAATTATCCGAAACAGATAGGAAAATGGAGTTAATATTGAATTTAGGTTTGACACCTAGAATTGTAGAACCACATGAGACTATTAAACATAATAATCTGATCGTACAATCGGATGTGTTTAGCAGCTCTGAAAGAAAACAAGGTACTAAGCGTAGATGCGATATGTTAGAAACTGAAAATGATAAAGCagaatacaaattaattaaaatagaaaGTGTTTTCGATAAACATGATTCCTTGAGCATAATTAAAGATGTAGAGTTAAAACATGATTCGTTAAATGATTTGGATGAAAGTAACCATTCAAATAAGGTAACTGAGGAGCTGATTAAGTGTAGGTCTTTTAATAATTTAGAACATACGATATCAACTGATACTAACGCGAAGGAAACATTTGCCACTGAGGAAGTAAATGCAGAAAATGATAATGACCTCACACATGATGAAGATTTAGTATCTGGGAATAAACCTATGTTAACTGAAGATCAATTATTGCCACCAGATTCGGTGACTATAGAAGAATGTCCTCAATCTAATGAAAACATATCTAAATTAAGTGAAAACTTGTCAATAGAAGAAGCAAAATTAAATAACGAAATAAGTGATGATGTATATGGATTGATAAGTAATGAAGATATAGAATATTTCGATGACAGCATTGAAATCCTAGAGGTTGAGTTGAGTGATAATGAAAGACAGTATTCATGTGAAATATATGATGAAGAAGATTATGTCAATACTGAAGATTTAGAAGTCGCGATGATTAACCCTGAAGAAGACTTATACGAAACAGAAGAAGACCAACAAATTATTAATGAAGAGGCATTGGGAATTTCAGAGGACActcttaattctaacacaaaaaaTACTCAAGTTTCTTCTGAAGATGAAGACGCTGAAAAGATAgatgtaaacaaacaaactgcACCATACACTGAAGGTTTTGAGGTGTCGGTCATTGACCCTGATGATGTTATTGATTCTGAGGATTACCAAAACAGCGAAGAAGAGTATCTAGATCTTTCAGATACTGATCTAGATATTGAAAGTAGTGTAAATACATTTGATAAAATAGATCCTACTCAAAATTCTCTACGTGATTCTGATAGTGAACGGATACAGATAGATTATACAAGTGATGAGATTAATTCAACTGACATCAAAGATCAATTAATAACAGACACCCcacaaaagaataaattagtTGATGtagcaaaaattaaaataagaaggGATTTGTTTCTCGAAGATAATGCTAAGTTAACTATAGATAATTTAGACGTAACTAAAGAAGGCAGCTTAGATAATGGTGATAATTTTGATGCTGACATTGAAGATGAAGTCAAACAAGAGTCTAATAGAAGTATAGATGGGATATCGGCGCGGGAATTTGAAGTGTTCCATCAGAAACATATTTTCTCAGTTCATAGACAGATTTCTCCGTGGTGGATTCCAAATCCCTATCAGTGTGATATGTGTAAAACTAAAGTGTTCTCATACTGA
Protein Sequence
MHDISTTRYREIFEKLSGNKLSIEDGRPETICFICNSRLERFWRFFETSQKAERIFTQRLLFGNEMGGTLDAALQLTTTPTKSLSLLDDGTSAEPEVTVTVKEEPQDMDDWELFQHQLMDSPSAQTEIDEIQSYLPDTEMTDTVTKMADIETNMADTDTAIRFEHKESKNELLEDIKIIKTEKIDYEIEETQENPAIVLQKICKAIEQFPLKADMKYHPKQSADAFYHCSKCDYRCQHAKTLRKHSKYHDPNNQFSCTFCLYRFADEKKLASHKNYCTVCNICGKKFHNLNGLRTHVRLHTGEQPFSCDLCGRGFNQKTNLQTHLRVHAREKQYPCEVCHKIFPFSSYLKRHMLIHSGNQLDGESIHRTLNCHKLFSRKKKNNVCICTVCGKSLRKDSMSMHLRLHTGERPFSCEKCNRCFNQKCNLLTHIERVHAGDDLFSCKVCFKTFAFHAELTKHAATHGLKIEIKQEMLVQSQKTIDKFVNDYDRMVDGRVNGEVELSETDRKMELILNLGLTPRIVEPHETIKHNNLIVQSDVFSSSERKQGTKRRCDMLETENDKAEYKLIKIESVFDKHDSLSIIKDVELKHDSLNDLDESNHSNKVTEELIKCRSFNNLEHTISTDTNAKETFATEEVNAENDNDLTHDEDLVSGNKPMLTEDQLLPPDSVTIEECPQSNENISKLSENLSIEEAKLNNEISDDVYGLISNEDIEYFDDSIEILEVELSDNERQYSCEIYDEEDYVNTEDLEVAMINPEEDLYETEEDQQIINEEALGISEDTLNSNTKNTQVSSEDEDAEKIDVNKQTAPYTEGFEVSVIDPDDVIDSEDYQNSEEEYLDLSDTDLDIESSVNTFDKIDPTQNSLRDSDSERIQIDYTSDEINSTDIKDQLITDTPQKNKLVDVAKIKIRRDLFLEDNAKLTIDNLDVTKEGSLDNGDNFDADIEDEVKQESNRSIDGISAREFEVFHQKHIFSVHRQISPWWIPNPYQCDMCKTKVFSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-