Prec032596.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- RPH1
- Assembly
- GCA_963082625.1
- Location
- OY720259.1:11295983-11324719[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00068 0.072 14.7 2.4 1 23 374 397 374 397 0.94 2 13 0.062 6.6 8.5 5.1 2 23 403 424 403 424 0.97 3 13 0.021 2.3 10.0 7.0 1 23 455 478 455 478 0.97 4 13 0.00097 0.1 14.2 0.2 1 23 482 505 482 505 0.95 5 13 0.018 1.9 10.2 0.2 2 21 520 539 519 544 0.91 6 13 0.0034 0.36 12.5 9.7 1 23 566 589 566 589 0.95 7 13 2.9 3.1e+02 3.3 0.2 2 23 639 659 638 659 0.87 8 13 0.26 28 6.5 2.5 1 23 665 687 665 687 0.92 9 13 0.00014 0.015 16.9 0.6 1 23 693 716 693 716 0.96 10 13 0.045 4.7 9.0 0.1 5 23 727 746 726 746 0.95 11 13 0.045 4.7 9.0 0.1 5 23 757 776 756 776 0.95 12 13 0.045 4.7 9.0 0.1 5 23 787 806 786 806 0.95 13 13 1.7 1.8e+02 4.0 0.0 8 23 815 831 814 831 0.94
Sequence Information
- Coding Sequence
- ATGTCTGAATTAAAACTATGCCGAATTTGTCTTAATAAAGATCTGAAGCTGTTCAAACTGGTACAGTGCAACTTGAAACAGTACTACGAGGAAATAACTCACAACAAGgttttaGTTAAAGATGATCTACCCCAATACTTCTGCTTCGAGTGTGCCGCGCTACTTTACAAATTCCATAAATTTAAGGAGAAATGCGAGTATGGACAATTCACATTGAAGGCTCTTAGTACTAGTGGATATATGACATACCATGTAATAGAAGACATCCGCAAGAACCGTTCAGATCTCCAACAGTCATCGGATTTCATAAACCATCTTAGCCAAAAGAGAATCAAAACTCTTGTGGTTAAATACAAAATTGAGAATGAGCCGCTTGAAATGGAAAATGTAACTTTAGATAAtgataatgttgatgatgatctTTTAAAATTTGAGTTCATGGCTGAATCTGATAATGAACAAAATGATGTCAAAACTGAGGAAGAAAAGAGTTTAGATATCACTAAAGCAGAATCTGTTTGTACAGATTTGGATGCAAATGTTGTTCCTTGTTCAAAAACCACAACTACTGAACCCACTGCCCTCACAGAAAACACTATTTTCACTAACATAGATGCCACACTAACTACTGATAACCTTAAGAAGGAAGAAGACCCAAAAACAAATATACTTAATGACATTTTATACGAATCTGATGATAACAGATCAAATGACGTTGATTTTGATGTGGACATTCATTTTAAAGCTAGTcaagcaaacaatacaatcaaCAAAAGAGTTAAGAAGGTAACAAGAAGAACAGCTAAGAATACACTAGGCACGTTATATGAGTCGGATGGTTATATAtcaaatgatgatgttgacctAGATCAGGATTTCACTCCTCACGATTCAGATAATAAAGAAGTTAGGAAATCCAAACGGACAGCAAGAAAGCCGGACAAAACGAAGAAAACCATTGAAAAAGTCAAGGACTCTGAACACAAGTTCGTAGGCATCATCCGACAACCGAAGGGCGAGCTTAGCACAGGCAACTGGGAGACCAAACTGTTGACGGATGAAGAAGCTATGGACCAGTTTAAGAAGAAAGAATTCGATTCTAGATACGAACGGATGGAGTTTAAATGCACTAAGTGTTTTAAAGGATTTTCTAAGAATGAAATGCTGCTGAGGCATAATAAGTTGTGGCATGATCATGGCGATAACGAGTGCCGTTTTTGTCACATGCAGTTTAAATGGAAGAGCAAGCTACAGTTGCACATGAGGAAGCATTACTATATTTACAAATGTCTGCGTTGCGGACTCGAGTTCTTTGTCAAAACTGGGGCGGTATTCCATGACGAGCACCACAACGGGGTCACACACACGTGCCGGCACTGCGGGGAAGAATACACGCACATATCCACGTACTACACGCACTTGCGCACGTCGCACCGCAACGCGCACGCGTGCAAGCTCTGCGGCGAGACGTTCGTCAGCGAGGCGGGCGTGGTCGTGCACATGAAGCGGAAGCACGTCATGCACAACCAGAACAACGAGGAGCCTTCGTCGAACATCTACTGCCAGAAATGCAAGATCTCGTTCGCGTCTCAGAGCGCGTACGACACACATCTCACGGTGTCTGAGTTGCACGAGGAAGAGAATAAAGACTTCAAGCAGCCAAAGAGAAAAAGAAGGGAGATAATAGCAAACGCGCACCGATGTCATCATTGCGACAAGAAGTTCAACAGCCGAAGACAGATGCGGGCGCATATCCACCAAGACCACCCCGGGCAAAGAAAGGTGGAGCGCGTAGTATGCGAGATCTGCGGCGCCGTGCTCTCGTGCGTTAAGATGTTCAAAGGTAAAGCAGCCAAACTGCTGCGCGAACATACGGAGAGGGAACACCCCGGGCAAAGGCGGGTGGAGCGTGTTGTATGTTCCATCTGTGGGGCGATGGTGTCGACCACGTATATCCACATACATATGAACAGGCACACGCGCAGTAAGATATTCCGCTGCGAGACCTGCGGGAAAGAGTTTCTGTGTGCCAACTCGCTCACTACTCATCGATTGTCTCACAGCGGCGAGCGCCCACACCCGTGCCCCATCTGTCCCAAACGCTTCGGTCTGAAGTCCCAAATGGAAGTGCACTACAAAAGGGTGCATTTGAAGGAGCCCTACCCTAAAAGTTATACCATCTGTCCCAAGCGCTTCGGTCTAAAGTCCCAAATGGAAGTGCACTACAAAAGGGTGCATTTGAAGGAGCCCTACCCTAAAAGTTATACCATCTGTCCCAAGCGCTTCGGTCTAAAGTCCCAAATGGAAGTGCACTACAAAAGGGTGCATTTGAAGGAGCCCTACCCTAAAAGTTATACCATCTGTCCCAAGCGCTTCGGTCTAAAGTCCCAAATGGAAGTGCACTACAAAAGGGTGCATTTGAAGGAGCCCTACCCTAAAAGCAAACCGTTCGCTTACGCATCCGATTTGGATATTCACTATAGGCGTGTGCATTTGAAGGAACCATACCCTAAAAGaACCTACAACAGGAAAAACAGAAATCGCCAGCCGCCGAATGAACTAGAGGTGCCTCTGTACGCGTCGCTTCCAAAATGA
- Protein Sequence
- MSELKLCRICLNKDLKLFKLVQCNLKQYYEEITHNKVLVKDDLPQYFCFECAALLYKFHKFKEKCEYGQFTLKALSTSGYMTYHVIEDIRKNRSDLQQSSDFINHLSQKRIKTLVVKYKIENEPLEMENVTLDNDNVDDDLLKFEFMAESDNEQNDVKTEEEKSLDITKAESVCTDLDANVVPCSKTTTTEPTALTENTIFTNIDATLTTDNLKKEEDPKTNILNDILYESDDNRSNDVDFDVDIHFKASQANNTINKRVKKVTRRTAKNTLGTLYESDGYISNDDVDLDQDFTPHDSDNKEVRKSKRTARKPDKTKKTIEKVKDSEHKFVGIIRQPKGELSTGNWETKLLTDEEAMDQFKKKEFDSRYERMEFKCTKCFKGFSKNEMLLRHNKLWHDHGDNECRFCHMQFKWKSKLQLHMRKHYYIYKCLRCGLEFFVKTGAVFHDEHHNGVTHTCRHCGEEYTHISTYYTHLRTSHRNAHACKLCGETFVSEAGVVVHMKRKHVMHNQNNEEPSSNIYCQKCKISFASQSAYDTHLTVSELHEEENKDFKQPKRKRREIIANAHRCHHCDKKFNSRRQMRAHIHQDHPGQRKVERVVCEICGAVLSCVKMFKGKAAKLLREHTEREHPGQRRVERVVCSICGAMVSTTYIHIHMNRHTRSKIFRCETCGKEFLCANSLTTHRLSHSGERPHPCPICPKRFGLKSQMEVHYKRVHLKEPYPKSYTICPKRFGLKSQMEVHYKRVHLKEPYPKSYTICPKRFGLKSQMEVHYKRVHLKEPYPKSYTICPKRFGLKSQMEVHYKRVHLKEPYPKSKPFAYASDLDIHYRRVHLKEPYPKRTYNRKNRNRQPPNELEVPLYASLPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -