Prec014935.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720244.1:19325684-19341085[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.045 4.7 9.0 0.4 3 23 50 70 49 70 0.97 2 16 0.00025 0.026 16.1 0.3 3 23 108 129 106 129 0.91 3 16 1.2e-05 0.0012 20.3 0.6 1 23 131 153 131 153 0.97 4 16 0.38 40 6.1 0.0 1 23 190 212 190 212 0.97 5 16 9.7 1e+03 1.6 5.9 1 19 268 286 268 290 0.86 6 16 0.038 4 9.2 0.2 1 21 296 316 296 319 0.88 7 16 1.1 1.2e+02 4.6 2.2 1 23 328 351 328 351 0.96 8 16 0.0012 0.13 13.9 0.4 2 23 357 380 356 380 0.95 9 16 2.3 2.4e+02 3.6 0.7 3 23 388 408 388 408 0.94 10 16 0.054 5.7 8.7 0.2 1 20 413 432 413 435 0.91 11 16 0.0029 0.3 12.7 0.9 1 23 441 463 441 463 0.97 12 16 0.0046 0.49 12.1 3.2 1 23 469 491 469 491 0.98 13 16 0.0013 0.14 13.8 2.3 1 23 497 520 497 520 0.96 14 16 0.0013 0.14 13.8 2.3 1 23 553 576 553 576 0.96 15 16 0.0013 0.14 13.8 2.3 1 23 609 632 609 632 0.96 16 16 0.0013 0.14 13.8 2.3 1 23 665 688 665 688 0.96
Sequence Information
- Coding Sequence
- ATGGCTTCATCTATAGCTTCATACATAGTTCTCAACAAGGACCTCGCCACCGGAAGGGATGTGGCTACAGAAGTCCCATTTGAAATACTAAACAGAGAAATTCATATTCCAAAGCTAACTTCTGTAAATAAAATTGGTGGTATACTCTGCAACATTTGCGAGTCaatatttggcaacaaaaaagATTTTGAAACACATTACAAAGCACACAATGTTGGAGAAATTGTGTTCACTTGTGTGGCATGCAAGAAACAACATTCTGAGTATCCGAGCTTCCGCAACCACTGCTATCTTCAACATATTGTGAAGCACAAGTTTGGatgTCAACAATGcagcaaaacattttcaaaacaGTCAGCACTTAATGCCCATGTCACTGCCATTCATGACTTCAAGTGTGGGGAGTGCGATGAAAAGTTTACGTCAAAGAAggatttacaaatacacaaaattATTCACAACAAAAAAGCAGCGGAAGATCCTCCTTACAACTGCATGAAATGCACCAAAGTTATAACCAGCATTGACATGTGTGAGGACCACCTCATTGATCACTGTGAGGTCTTGTACCCATGCCCCATATGCGCCATGGTCCTGCCCAACAAAATTGAAGCTACTATCCATCTATCCATACATTTTGATGACAAACCTCTGGAAATATTGAATGCCTCGAACATTGTTGAAAACAGCTCTATAGAAATTTTAGGAGGCATCTTGTGCTGCCACTGCGATGAGCTGTTTAAGAATAGAACAGAGATAGACTCTCACTTTGCTGCAGAGCATGATGATAAAGTTGTTGTCTACTCTTGTAACATTTGTGAGAAGCAGTATACTAAGTACACATTATTTGGAAACCACTGCCATTTTCACACGGCTAAAGATAAGTTCAAGTGCGAAGAGTGCAACCGTCTTTTCCCCCGTCTACCTCTCCTGGTAATGCACAACCTTGCCTTCCACTCCGAGGGTGCTGTCGATAAGCCTTATCGCTGCGACTCCTGCATTTACGGCTTCAAGAGCCACTACCGTCTGATAGAACACAAGCGGCTGGTGCATGACGAGGTCACCATCAAATGTCAAACGTCCGGGTGTACCTCTACTTTCAACACGCCCTCGGAGCTAGTCAACCACCAGCGCGAGCACAAGTCCTGCCTCGACAACTGGTGCCGCCAGTGCGGTCTCCAGTTCGCGACGCTAGCGGCTTGCGAGCGGCACCTCGACCTGCATCGCCGCAAGCAGTACGTGTGCCCCGTCTGCTCGCGAGCCTACCGCGAGCGGTACCTCATCGTCAAACATCTGCCGAAGCACTTTGAGGCGGTGCTGCATATCTGCAAGGTCTGCGGCAGATCATACAGCGCCCGCAACCGGCTCATCGAGCACGCGAAAACCCACTCAGAACTGAAGAAGCACAAGTGCACGTACTGCAGCAAGACTTTCCTGCGCTCCTACGAGGTGGAGCAACACGAGCGCGTGCACACGGGCCACAAGCCTTACCACTGCACCGTGTGCTTCAAGACATTCGCCAGCTACCCCAACTGGACCAAGCATCTGACCCGCGCGCACGCCTTCGACAAGAACATGATCAAGGAAGTCAGCAAGACTTTCCTGCGCTCCTACGAGGTGGAGCAACACGAGCGCGTGCACACGGGCCACAAGCCTTACCACTGCACCGTGTGCTTCAAGACATTCGCCAGCTACCCCAACTGGACCAAGCATCTGACCCGCGCGCACGCCTTCGACAAGAACATGATCAAGGAAGTCAGCAAGACTTTCCTGCGCTCCTACGAGGTGGAGCAACACGAGCGCGTGCACACGGGCCACAAGCCTTACCACTGCACCGTGTGCTTCAAGACATTCGCCAGCTACCCCAACTGGACCAAGCATCTGACCCGCGCGCACGCCTTCGACAAGAACATGATCAAGGAAGTCAGCAAGACTTTCCTGCGCTCCTACGAGGTGGAGCAACACGAGCGCGTGCACACGGGCCACAAGCCTTACCACTGCACCGTGTGCTTCAAGACATTCGCCAGCTACCCCAACTGGACCAAGCATCTGACCCGCGCGCACGCCTTCGACAAGAACATGATCAAGGAAGTCAGGGAGGCGCGCAAGCAAACCTTAGACCACGCCAAAACCTCCCCCGTGAAAGCCGAGTCAGGAATCGAATCCGCCGGGTCGGAAGTCTCGGATCTGTACGGTCTTCTGGAGTCTGACGACAGCGCGGACGACGGCCCTATCAAGAGACTAAAGACGGAGATCAACCTCATAATGGAGCATACCGGCACTGACAAACTATCTGAGAGTTCTATAACGGATACAGTGAACGCTGCCATCGGACGGATCGACGTAGACGAGAATCTGATCATGTCTCCGGTGGAGGATTTGAGCGGCTCGGCTGATTTTAACGAGTTCCCGGACGACTCGAGCGATATAAAGGCGATCGTGGAGCATATAGACGCTCTGAGCGGCGGCTTGGAGATGCCAGCTAGCCAGCCGGGTGTGCTGCCGTATGCGGAGATGCAGCCGCTGCAGAACGTCGTGTATGATGCCGTTCCAGTGTATCAGAGCCAGCCGCCCGCGCCCCAGTACTGCCAGCCGACGAGCGTGCCGCTGGAATACGGACCCGACTTCAGCACGCTCGGCGCCGAGCTGTATACGTACGCAGACGTGGTCAACCTCGACGACCACGAGCTGCCCCACATAGACCCGCTACTCACCATCAAGGCCGAGCAGAACAAGATATACCAGCCGAACAAGATATACCAGCCAAACATGTTCGCCGGCGACGTACCCGCGTACGATCCGACCTGGCAGCCGATTATAACTAAAGTTTACACGTACGAGGAAGCGAACGACAACCGAATGTATGTGCTGAATGCACGCGCGGCCCGGCCGCCGGCGAGGCTCCGTGCTTCTAAATTACTAATTAAACAAATAGTTGCTTTTCCCCTGTGCGAGTTCGTCCGATGCAGAGCTGGAGGCGCCGCCCCGGCCGCCTCGCTTGGAGCTCGCTCGCACAGCGCAGAGTCAACCTGA
- Protein Sequence
- MASSIASYIVLNKDLATGRDVATEVPFEILNREIHIPKLTSVNKIGGILCNICESIFGNKKDFETHYKAHNVGEIVFTCVACKKQHSEYPSFRNHCYLQHIVKHKFGCQQCSKTFSKQSALNAHVTAIHDFKCGECDEKFTSKKDLQIHKIIHNKKAAEDPPYNCMKCTKVITSIDMCEDHLIDHCEVLYPCPICAMVLPNKIEATIHLSIHFDDKPLEILNASNIVENSSIEILGGILCCHCDELFKNRTEIDSHFAAEHDDKVVVYSCNICEKQYTKYTLFGNHCHFHTAKDKFKCEECNRLFPRLPLLVMHNLAFHSEGAVDKPYRCDSCIYGFKSHYRLIEHKRLVHDEVTIKCQTSGCTSTFNTPSELVNHQREHKSCLDNWCRQCGLQFATLAACERHLDLHRRKQYVCPVCSRAYRERYLIVKHLPKHFEAVLHICKVCGRSYSARNRLIEHAKTHSELKKHKCTYCSKTFLRSYEVEQHERVHTGHKPYHCTVCFKTFASYPNWTKHLTRAHAFDKNMIKEVSKTFLRSYEVEQHERVHTGHKPYHCTVCFKTFASYPNWTKHLTRAHAFDKNMIKEVSKTFLRSYEVEQHERVHTGHKPYHCTVCFKTFASYPNWTKHLTRAHAFDKNMIKEVSKTFLRSYEVEQHERVHTGHKPYHCTVCFKTFASYPNWTKHLTRAHAFDKNMIKEVREARKQTLDHAKTSPVKAESGIESAGSEVSDLYGLLESDDSADDGPIKRLKTEINLIMEHTGTDKLSESSITDTVNAAIGRIDVDENLIMSPVEDLSGSADFNEFPDDSSDIKAIVEHIDALSGGLEMPASQPGVLPYAEMQPLQNVVYDAVPVYQSQPPAPQYCQPTSVPLEYGPDFSTLGAELYTYADVVNLDDHELPHIDPLLTIKAEQNKIYQPNKIYQPNMFAGDVPAYDPTWQPIITKVYTYEEANDNRMYVLNARAARPPARLRASKLLIKQIVAFPLCEFVRCRAGGAAPAASLGARSHSAEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -