Basic Information

Insect: Pasiphila rectangulata
Gene Symbol: -
Assembly: GCA_963082625.1
Location: OY720261.1:11016330-11020926[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.7e-05 0.005 18.4 1.9 1 23 259 281 259 281 0.97

2 11 2.7 2.9e+02 3.4 2.8 1 20 292 315 292 317 0.88

3 11 0.11 11 7.8 7.8 1 23 529 551 529 551 0.97

4 11 1.9e-05 0.0021 19.6 1.0 2 23 557 579 556 579 0.96

5 11 0.00064 0.068 14.8 1.0 2 23 588 609 587 609 0.96

6 11 0.0003 0.031 15.8 1.1 3 23 614 634 613 634 0.97

7 11 0.053 5.6 8.8 1.1 2 23 648 670 647 670 0.95

8 11 4.1e-05 0.0044 18.5 2.2 1 23 676 698 676 698 0.98

9 11 0.0013 0.14 13.8 5.2 2 23 705 726 705 726 0.98

10 11 0.0072 0.76 11.5 6.2 1 23 732 755 732 755 0.95

11 11 8.3e-05 0.0088 17.6 1.4 3 23 761 782 759 782 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.7e-05	0.005	18.4	1.9	1	23	259	281	259	281	0.97
2	11	2.7	2.9e+02	3.4	2.8	1	20	292	315	292	317	0.88
3	11	0.11	11	7.8	7.8	1	23	529	551	529	551	0.97
4	11	1.9e-05	0.0021	19.6	1.0	2	23	557	579	556	579	0.96
5	11	0.00064	0.068	14.8	1.0	2	23	588	609	587	609	0.96
6	11	0.0003	0.031	15.8	1.1	3	23	614	634	613	634	0.97
7	11	0.053	5.6	8.8	1.1	2	23	648	670	647	670	0.95
8	11	4.1e-05	0.0044	18.5	2.2	1	23	676	698	676	698	0.98
9	11	0.0013	0.14	13.8	5.2	2	23	705	726	705	726	0.98
10	11	0.0072	0.76	11.5	6.2	1	23	732	755	732	755	0.95
11	11	8.3e-05	0.0088	17.6	1.4	3	23	761	782	759	782	0.96

Sequence Information

Coding Sequence: ATGGAGATCGACACCCTTGAGTTTGTAAAATTCAATCCCCAATTTAGCAAGAAAACCTATTCAAAAACAACACCAATCTGTGATGAAGCTAATACTGTTCCTATTCCACAAAATACTCCGGAAAAATACGACATAACCGATGAAGAGATTCAAATACCTCAAGTGGATAAAACGAACGTCACAAATGAAGAGCTGACAACCAGAAATGCCGTCAGTTTCCTGCTATCAGGTACTCTGAAGACCAAAGTATGTAGGTACTGCCTGGTCGTAACAGAGGAGTTGCATGAATTGGAAAAGACTTTCGAAATTGGGTCTAAAGCAGGCCTATATTCTGTTACCATAAAAGACATGCTGGCCAGTTTTCATCCATTTCAGGTGTCTGATGATCCAAATTTCCCTACCAAAATCTGCAACAAATGCGTAGACCGCACTTTAAACTCGTACCTATTCACTCAGCAGTGTGAACAGTCAGAACGAGCCTTATCAAACTGCTTCGATGACATCTACACAAAGTTAAGCAAATTGGACCCGATAGAAGGCACCAAACACACCCGTGGCAGAAAAAAAACCAAACTTAACCACAACAAAATAAACGCTGAACATTTACATGTAATTGACTATGCTGATCCCATTTACCAGATCGTTAACACAGCATCAGATTCGCTGTCAACGGAACCAGGAATTTCACCTTTAGAATGCCTCAAATGCTGCCAAGTTCTGCCGACAATGGAGTCCTTGGTGAACCATTCCAAATTACATCCTTCGACTATGTGGTTTAACTGCCGTCTCTGTGGCAAATCATTTCCTAAGCTCTATCTGTTGAGACGTCACTTTCGGGAGCACAATGCTGTTTCTCCCGCAACTGAGCAGAAGTTTGAATGTAAGACTTGCGGCGAAACTAATGAGAAATACTACAGGCATATCCAGCATCTAGAAAAGCATAAGTTTAAAATGCTGCTGGACCATTTAGTGCATAGAAAGATGGATTCGTTATGTGCAATCTGTTATGATAAGGGTGACTTGGTTCCATTAGACAGGCTGGTGAGCATATACGGAGGCCCACCAGGTCTGATGGGAGTTAGGAGTATGCAGAGTATTTTGGCATCAACTGTGCCTGAGTTGGACTACATAAACTACACAGGATCTCAAATATGTGAAAAGTGTGTAAACAATGCAATAACATCTTACAACTTCAAGATTCACACATACTTTGTCCGAGAACGCTTATACACATGCCTCGGACACATGCTGGATAGTCTTAATAATATATCAACAGATAATAATTTGTGTATTGAAATATCTAAAGAAACAATAATGCCTTTAAAAGATAGTTTAGATGAATCAGTATTTAATGAAGAAATCAATGAATATGATGACGCAAAGGAGGAAGTATATCTTGAAGATGAATATAGGATAAAGTCTGATGAAGAATCCGATGAATTTGATGAAAAACCCACAGTGAAAAGTCAGGATGAAAATGACAAAGTTATTGAATGCGAAAGAGAAGGAACGGTGTATATGAACGGACTCCAAAATGTAGAATTATTGCCACGCAATGATAAACAGAAACACAGAAGTTATAAGTTCACTTGTCATATTTGCAGCAAATATTTTGCTTCTGGTTATTTCCTTAAACGGCATTGTCGGAAGCATTTTAACCAGAACCAACAATGCAAACTTTGTGGTACCACTTTTGCCAACAAATTCTCCCTGCAGGAACATCAGAAGTATGCCCATGTTCTATACCAAAGTGATTACAAACCATGCAAAATCTGCGGCAGAGGATTCACAAAAGAAAATAAGCTTAAGCTTCACGAGAAACAGCACGAAAACAAACTCTGTCTCCTATGCAATAAGGTCTTCAAAACGCAAGGATTCTTTAATGCTCACTTGCAAAGGCATAAGCCCAAATTAATGGAGTTAAAGAGAAAATACAGCCAGTCTTGCAGCTTCTGCGAGAAAGTCTGTGCAAACGATAACCAACTGTCTATACATGTGAATAAGGTGCATCTGCTAATGAAAGCCTACAGTTGTGATATGTGCGAGAAACAATTCTATTCGGAATACAATTTGAAAAACCACAAGAAAATCCACAGTAGAAAGAGCAAGGAGCAATGTCACTTTTGCAGCAAAACTCTGAAATCTAGGAAGCAACTGGTTAGTCACATAAGGAAGCATATCGGGGCTACGCCACACACTTGCCATTTGTGCCACGAGTCGTATTACACTGTGGCAAAGTTGAAAAAACACATGAATTTTGCCCACGGGGGCTCTGTCATTTGTAAGATTTGTAAACATATATTCGTAAGCAAAAGTCAACTTAAAACACATGTGAATAAGGCGCATAGTTTCTTATAG
Protein Sequence: MEIDTLEFVKFNPQFSKKTYSKTTPICDEANTVPIPQNTPEKYDITDEEIQIPQVDKTNVTNEELTTRNAVSFLLSGTLKTKVCRYCLVVTEELHELEKTFEIGSKAGLYSVTIKDMLASFHPFQVSDDPNFPTKICNKCVDRTLNSYLFTQQCEQSERALSNCFDDIYTKLSKLDPIEGTKHTRGRKKTKLNHNKINAEHLHVIDYADPIYQIVNTASDSLSTEPGISPLECLKCCQVLPTMESLVNHSKLHPSTMWFNCRLCGKSFPKLYLLRRHFREHNAVSPATEQKFECKTCGETNEKYYRHIQHLEKHKFKMLLDHLVHRKMDSLCAICYDKGDLVPLDRLVSIYGGPPGLMGVRSMQSILASTVPELDYINYTGSQICEKCVNNAITSYNFKIHTYFVRERLYTCLGHMLDSLNNISTDNNLCIEISKETIMPLKDSLDESVFNEEINEYDDAKEEVYLEDEYRIKSDEESDEFDEKPTVKSQDENDKVIECEREGTVYMNGLQNVELLPRNDKQKHRSYKFTCHICSKYFASGYFLKRHCRKHFNQNQQCKLCGTTFANKFSLQEHQKYAHVLYQSDYKPCKICGRGFTKENKLKLHEKQHENKLCLLCNKVFKTQGFFNAHLQRHKPKLMELKRKYSQSCSFCEKVCANDNQLSIHVNKVHLLMKAYSCDMCEKQFYSEYNLKNHKKIHSRKSKEQCHFCSKTLKSRKQLVSHIRKHIGATPHTCHLCHESYYTVAKLKKHMNFAHGGSVICKICKHIFVSKSQLKTHVNKAHSFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -