Prec033892.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720261.1:11007264-11010542[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1 1.2e+02 4.6 2.9 1 23 244 267 244 267 0.93 2 15 0.089 9.4 8.0 3.7 1 23 272 295 272 295 0.95 3 15 0.0061 0.64 11.7 0.9 1 23 325 348 325 348 0.97 4 15 0.0049 0.52 12.0 1.3 3 23 410 431 408 431 0.92 5 15 0.00011 0.012 17.2 1.3 1 23 437 460 437 460 0.96 6 15 0.02 2.1 10.1 0.2 2 20 464 482 463 484 0.92 7 15 0.025 2.7 9.8 0.3 1 23 492 515 492 515 0.95 8 15 0.0069 0.74 11.5 0.3 1 23 520 543 520 543 0.95 9 15 0.0012 0.12 14.0 0.2 2 23 556 577 555 577 0.97 10 15 0.011 1.2 10.9 1.5 1 23 583 605 583 605 0.96 11 15 0.00017 0.018 16.6 0.8 1 23 642 664 642 664 0.97 12 15 0.0022 0.23 13.1 2.2 2 23 708 730 707 730 0.96 13 15 2.1e-06 0.00023 22.6 1.8 1 23 736 758 736 758 0.99 14 15 0.00031 0.033 15.8 5.1 2 23 765 786 764 786 0.96 15 15 0.019 2 10.2 2.3 1 23 792 815 792 815 0.96
Sequence Information
- Coding Sequence
- ATGGATGCACAGTCCAAGTCATTCAAAGAACGGTTGAACATAGAATGGCTGAAGGATCGCTTGAAGACAATATGGTGCTGCCCCCGGTACTGCCTGCTTTGCCTTGCAAGGAACGGGCAGTTCTACTCTCTGGACATGGAGTTTGCACCCAATGAAGAGATGTCTTCAGTTCCTTTGAGAGAAGTTGTCAATTATGTGTTTAATTTTGATGTTGAGGACTACATGCCAAGCAATGACATCTGTGAAGTATGCGCAGAGAAAACAATACAATCCTACATATTCATTACAAACACAAAGAAAACCTACCAGATTCTAAACAGCTGTTTCAATGATATGGAATCAAAAGTAGATGACATAAGCTGCACTTTAAATGATGAAACCAACTATGAGAACTCAAACATTATGATTGTCATTGAATATGATGACAAAACATACAATCAGATTAAAGAATTGAATGCTGGTAATAATACTGTACTAACTCACAAACCTATAACTATTGGAAGGAACATAAGCACAATAGTGACGGAGACTAAAgagcttaaagaaaaaaataggcTAATTATCGCACCTACACCAAGAGTAATAAGATATCCAAGAACTAACATAGTAAAGAAGAAAGTATCCGTTCAAGAGAAGGTACCAACCCCAAACGTAACGTTGAAAGAAGGCAAAATTGTCATTGAGCCATTGTTAACCAACACGGTACCATCCTCTCCGCGATTCAATACATACTGTTGCACGTCTTGCGAAGATATATTCACAACTTACAGATCTCTGAAAGAGCATGAAAAGGCGAAGCATAATGCCGTTATATTTAAATGCAGGTTCTGCAATAAAGTCTACAATACTCAACAGTACTTAGACTTTCACTACCGGTCGCTTCACAACAAATCCAGATGCAGATTCTGTCCAGACCTATTTGAGGCTGATCATCTGAACCAACATTTAAAAGAGGCTCATAAAAGTCATGTATACAGCTGTCTGGACTGTGATCTTGTTTACTACACAACGGAGAAGCTAGACACACATTACAGGTCGACGCATGTCGGAAAAATAGACAATGATGAAACAGTATGCATTATGTGTTTGAAGAATTTGAAAGATAAGGAAGTAGCTAGTCATAAATGCAAGTTCTCCTGCTTAGAATGCCCTGTGGCACCCTGCATTCACTACAGCTATTTAATGTCGTACAGAGAGCAGATATTAAACAATTCAGCAGTAATCAGATGCATAGATTGTGACTACACAACTAAACGGAAAGAGCATTTGATAACACATGTCAACCGTGAACATTTAGACTACCATCCATTCACATGTGGCGACTGTGGAACGCAGTTTTACACAAAATTGTCTTTAAAAACTCACATAATGCAATTCCATCAAGATCTCAAATGTCAGTATTGTGATATCACTTTTAAAAGCATGAAGGCTATAAAAAGTCACCGAGAGGCTTGTAAACTGATCAGTCGGTTGTATGACTGTGATAAATGTGTGGCCTCATTTGATTCAGCCCCGGAATTGCATACTCATGTGAAACTCAATCATAGTGAGTTTGTATTTCCTTGTTCATTGTGCACCAAAGAATTTCCTATAGAGAGCAGCTTGGAAGAACATCATGCTAGAGTTCACAATGGTATACAATACAAGAAGCGTAGGAAGATGATTGAATGCACCGTGTGTGACATCACATTCAGAAACCTCAAAGAAATGCTGGAGCATGAACAAACGCATCCCTCTGGTCAAGTATACCCATGTAAAGTGTGCCCAAAGTCCTTCCAAAGTTTGAAGAAGATCTACCTACATAAGCAGAGGCATTACACACAACGAGACAAATGCATCGGCTGTAAAAAGCCTGTTGTATCATCATACTATAATCAGCATAAAGTACTCTGCCCTTTTTTGAAAGATGGTGGAAAGGAAATGCATGTCTGCGATGTGTGTGGCAAGTCATTCCTAACAGAGGCAACTCTAAAAACCCATCTACAATCCCATACAAACCCTGATCCGTGCATACATTGCGGGAAAATGATAAAACCTCTCTCTATGAAGCGGCATCTCGAGCTAAAACACTCAGTGTACGCGAACATAAGCGATACTCAAATGTCTAAGTTTCATAAGTTGAAGTGCGATCATTGCGACTACGTGACGCGAAAGAAAAACGACTTTGAGAATCATGTCAATAAGGTCCATTTGCAAATAAAGCCGTACAGTTGCGATATCTGTGGAAAACAATTTTGCGGCAAATCTAGGCTGGCTGAACACATGCGTACACATTCTTCTAACAACACATGCTATTGCCCGATCTGCAGTAAGAAATTCGCGAACAAAGTTTGCCTTAAAATGCACGTAAGAAGACATACGAACGAAAATCCTTACGAATGCAACATATGCTTTGAAAAATTCCGATCTTCGAGCATTATGAAGACGCATCGGTTGAAGAAGCATCAGGATAAGACGATAGCCTGTCCATTATGTGACGCCATGTACCATTTGGTGGCAGAAATGAGGTTTCATGTGAAGAAAACTCATTGGAAGCTTCCGGAACCGTTTGATTATAGGAAGCTGGTATCTGAAGAGTATTACCACCTTTTCCGAGATAGGCGATTGCAGAAACTTGGTAACGAGAGTGATATTGTTGATGAGTTTATTATTCCATAG
- Protein Sequence
- MDAQSKSFKERLNIEWLKDRLKTIWCCPRYCLLCLARNGQFYSLDMEFAPNEEMSSVPLREVVNYVFNFDVEDYMPSNDICEVCAEKTIQSYIFITNTKKTYQILNSCFNDMESKVDDISCTLNDETNYENSNIMIVIEYDDKTYNQIKELNAGNNTVLTHKPITIGRNISTIVTETKELKEKNRLIIAPTPRVIRYPRTNIVKKKVSVQEKVPTPNVTLKEGKIVIEPLLTNTVPSSPRFNTYCCTSCEDIFTTYRSLKEHEKAKHNAVIFKCRFCNKVYNTQQYLDFHYRSLHNKSRCRFCPDLFEADHLNQHLKEAHKSHVYSCLDCDLVYYTTEKLDTHYRSTHVGKIDNDETVCIMCLKNLKDKEVASHKCKFSCLECPVAPCIHYSYLMSYREQILNNSAVIRCIDCDYTTKRKEHLITHVNREHLDYHPFTCGDCGTQFYTKLSLKTHIMQFHQDLKCQYCDITFKSMKAIKSHREACKLISRLYDCDKCVASFDSAPELHTHVKLNHSEFVFPCSLCTKEFPIESSLEEHHARVHNGIQYKKRRKMIECTVCDITFRNLKEMLEHEQTHPSGQVYPCKVCPKSFQSLKKIYLHKQRHYTQRDKCIGCKKPVVSSYYNQHKVLCPFLKDGGKEMHVCDVCGKSFLTEATLKTHLQSHTNPDPCIHCGKMIKPLSMKRHLELKHSVYANISDTQMSKFHKLKCDHCDYVTRKKNDFENHVNKVHLQIKPYSCDICGKQFCGKSRLAEHMRTHSSNNTCYCPICSKKFANKVCLKMHVRRHTNENPYECNICFEKFRSSSIMKTHRLKKHQDKTIACPLCDAMYHLVAEMRFHVKKTHWKLPEPFDYRKLVSEEYYHLFRDRRLQKLGNESDIVDEFIIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -