Prec029677.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720256.1:9252349-9253686[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 8.6e-06 0.00091 20.7 3.2 1 23 168 190 168 190 0.98 2 8 0.0019 0.2 13.3 3.2 1 19 196 214 196 218 0.92 3 8 4.3e-05 0.0046 18.5 2.6 1 23 224 247 224 247 0.97 4 8 0.00043 0.046 15.3 1.5 1 23 254 276 254 276 0.95 5 8 6.9e-05 0.0073 17.8 0.1 1 23 281 303 281 303 0.93 6 8 0.00093 0.099 14.3 2.6 1 23 312 337 312 337 0.93 7 8 0.16 17 7.2 5.3 1 20 343 362 343 365 0.95 8 8 0.00019 0.02 16.5 3.9 3 23 372 392 370 392 0.96
Sequence Information
- Coding Sequence
- ATGGAGTTTACAGGTTTAATACTACCACTCACCAAAAACATTTGTCGTACCTGCCTCATGGAAACTGATCCATCCTCCTTCATGAATATACAGGATGTAATCGAGCACGATAATAACAAGATCAAGTTGATCGATATTTTAGTCTACTTGAATTGTTTGGAGAACAACGATGAAGAGAATTGGCCACAAGGGATATGCTCAACATGTGTTTCAGCGTCATTGAGCGCGTATAACTTCAAAATTGAGTGCTTGAAAGCCACTTCTACACTGTCCAGAATTCTCATGATACAATCTCCAACCAATTTCCCTAGAACTGATATCGACGCCATAGACATCAATGTTGTGTACCAGGACCACCAGTATGACTTACCACTCTTTAGCAACCACCATTCTTTGGACTTTGAGTCCTCTTTAACTGAAAGCAAAGAGGTAACCCCATTGCCACCAGTAACTGCAATAACATCAACAGAACAGCCACCAAGAAAAGTGGGGGAAAAGAAATACCCATGTACCTATTGCAATAAGTCATTTACTAGAATTTATGGCTTTCGCCACCATATTGCAAAACATGGGGAATTCAGAAGGTTCTTATGTTCTAAGTGTGGCAAAGGATTTCACACATCCAGTGGACTAAGGCAGCATGCAATTTGCCATAAAGATTCTGGCCAGTTTAAATGCGGATTCTGCAATAAGACTTATAAGTCAAGACAGTCACTGAAAGAGCATTTTAGAGTGGCACATTCCAGCAACCGTATGGGATATGTTTGTATAACATGTGGGAAGAGATTTACCATGAGATCAACACTGATGATGCATTCGAAAACTCATAGTGGCGAGAAGTTCCCATGTCCAAGTTGTCCGAAAGTATACTCCAGGGCAACTTATTTAAAGGCACATAGTGTTGTTCATACTGGTCAAGAGAGACCAAAACCATTTTCATGCTCTTATGAAAACTGTGGTAGAAATTTTGCCACTAAACATTCATTATCTGTGCATATTGCACACACCCACACCACCGAAAGACCGCATAAATGTGATATTTGCTGTAAGGGTTTCGCTACAAGTTCCGGCCTGAAGATCCATAAGGATTGTCACAGGAAAAATGAGATATGTTGCAAGATCTGTGGAAAGAAGCTGAGAAACAGGAGAGTTCTTCAGAAACATCTGAAGACTCATGACATTGATACAAATGACATGATCCTGGAAACTGTAGCTGATAGTGTATTCTTTGATCattattattaa
- Protein Sequence
- MEFTGLILPLTKNICRTCLMETDPSSFMNIQDVIEHDNNKIKLIDILVYLNCLENNDEENWPQGICSTCVSASLSAYNFKIECLKATSTLSRILMIQSPTNFPRTDIDAIDINVVYQDHQYDLPLFSNHHSLDFESSLTESKEVTPLPPVTAITSTEQPPRKVGEKKYPCTYCNKSFTRIYGFRHHIAKHGEFRRFLCSKCGKGFHTSSGLRQHAICHKDSGQFKCGFCNKTYKSRQSLKEHFRVAHSSNRMGYVCITCGKRFTMRSTLMMHSKTHSGEKFPCPSCPKVYSRATYLKAHSVVHTGQERPKPFSCSYENCGRNFATKHSLSVHIAHTHTTERPHKCDICCKGFATSSGLKIHKDCHRKNEICCKICGKKLRNRRVLQKHLKTHDIDTNDMILETVADSVFFDHYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00737729;
- 90% Identity
- -
- 80% Identity
- -