Prec035932.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720264.1:1436026-1442220[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.8 4e+02 2.9 0.8 2 23 55 77 54 77 0.87 2 22 0.017 1.8 10.3 0.1 3 23 105 125 103 125 0.95 3 22 0.044 4.6 9.0 2.6 2 23 130 152 130 152 0.94 4 22 0.83 87 5.0 1.2 2 22 157 177 157 177 0.93 5 22 0.088 9.3 8.0 4.8 3 23 185 207 184 207 0.86 6 22 3.3e-05 0.0035 18.8 0.9 1 23 214 237 214 237 0.98 7 22 0.086 9.1 8.1 4.7 1 23 242 264 242 264 0.95 8 22 0.0012 0.13 13.9 1.1 1 20 271 290 271 293 0.91 9 22 1.3 1.4e+02 4.4 5.9 1 13 299 311 299 313 0.88 10 22 3.7 3.9e+02 3.0 0.5 2 23 389 410 388 411 0.86 11 22 2 2.1e+02 3.8 0.5 2 23 439 460 438 460 0.90 12 22 0.39 41 6.0 4.5 1 23 464 486 464 487 0.94 13 22 0.029 3.1 9.6 0.1 1 22 491 512 491 512 0.95 14 22 0.0047 0.5 12.1 0.2 1 23 519 542 519 542 0.93 15 22 0.015 1.6 10.4 2.8 1 23 549 572 549 572 0.96 16 22 0.0012 0.13 13.9 0.6 1 23 577 599 577 599 0.98 17 22 0.00011 0.011 17.2 1.2 1 23 605 627 605 627 0.92 18 22 0.069 7.3 8.4 0.3 1 12 633 644 633 648 0.91 19 22 0.12 13 7.6 0.3 2 23 720 742 719 742 0.96 20 22 1 1.1e+02 4.7 0.7 6 23 773 790 770 790 0.85 21 22 0.0023 0.24 13.1 0.2 1 23 794 817 794 817 0.97 22 22 0.0031 0.33 12.6 0.8 1 21 821 841 821 842 0.93
Sequence Information
- Coding Sequence
- ATGTGCGTTTACTGCTGCGACGAAATTGAAGACCCTGAAAACTTTAGAAGCCATATGGACCAACTCCACGACACAGCCAATCTGGACATTGCTTTTGCTCACATCAAGTCTAGAAATAGGATTAGCGATAAAGGTTACCTGAAAGTTGACTGCATGAATCTTAAATGCAGGTTGTGCGACAAACAGTGCCAGTCAGTCGCTCTAGTTGCTGAACATCTGAAGGATTATCATGAAAACGATGAGATTAAATCCTTGGATCTGCGCTATGAGGTGGGTCTTTGCCCGTTCTCTTTGAATAAAGACAAATGGATCTGTGCATTGTGCGATTTGAAAGTACCGACATTGACTAGCCTCAGTCGTCACATGTCATCACATTACGCGGATAACGTATGCAATGTTTGTGACAAGAAGTACATAAGCGCACACGCCTTGAAATTCCATATCAAACACAATCACTCTAATGTAGAGACTTGTAGAAAGTGCAATATGGAGTTTTCCACTATAGAAAAAAAGAAGGAACACCTGAAAACATCAGCGAAATGCTTGGGATTCTGTTGCATTTATTGTAATGAAAGATTCTCTTCTTGGGAGCATAAGCAGAGGCATCTGGTTAGTAAGCACGATGCGAAAGCCCGTTCATATCCGTGCCCTGATTGCGAAACGGTTTTCGACTCGAGGTCTAACTTCTACTATCATTATAACACAACTCATGCTGATTTACCTCATATGTGCTCATACTGTGGTAAGCAGTTCTTGAAGAAATGTCAGCTTGTTAATCATTTGGGCAGTCATACTGGCGAAGAAATCCAACACAAATGCTCTATCTGCGCCAAGATTTTCACCAGGAGGCAAGGCTTGCAAGAACACTTGTGGACGCATTCGAAGAATAAGAGATTTTCTTGCACGTATTGTGATAAGAAATTCACGAAGAGAAATTGCGAACTGGTGCGACGGAACGCTGAAATTGTGTTACAGTATTCGACGCTGTATCCTTTCAGCTATCGGGGGAAAACCTTGATTTGTGTTTACTGCTTCTACGAAATACAAGACCCGGAAGGTTTTAGATGCCACATGGACGAGGCGCATAGTGCCGTAGATCCGAAAGCTGCGTTCGCACGCCTCCATTCTAAGCGAGATTATGTAAAAGTTGATTGCGTTAATCTCAAATGCAGATTATGCGACGAACCTTTCGATGGAATCCCTGAAATATCTCACCATCTCCTcgatcatcataatcataaagaAGATATTGAAAAAATCGACTTGAACTTCGACGTTGGATTAGTTCCGTATCGATTAGTCAAAGATAATCTGTCGTGCCTTCTTTGCAAAATGAAACAGCCGACCTTGGTAAAGCTCATAAGACACATGTCATCGCACTACGCCATCTACGCGTGCAATGATTGCGATAAAATGTACAATTGCGCAAACAGCTTGAAGTTCCACATTAGGTATCACCACTCCGGCAAATACGCCTGCAGAAAATGCTGGACCGAGTTCGCCTCGAAGGAAGAAAGAAAGGAGCATATTAGAGTATCTTCGAATTGTTGGGGGTATGCCTGTGATGATTGTAAGGAAAGATTCATTTCGTGGGACCTGAAACAGGTTCATTTAGTCAGCAAGCACAACGTGCAGCCCTTGTCGTACCCATGTGCTGACTGCGGGCTAGTTTTTGAATCGAGGCTACACTTCTATAGTCATTATCATAAGATGCACTCTGATGCTGCATTTGTGTGCTCGTATTGCGGAGAAAAGTATGAAACTAAAACTCGATTGGATGATCACCTTCTCTCACACACCTCCGAGAAACGTTTCATGTGCAGTATTTGTGAGAGGAAGTTCTCAAGGAAAAGGTCTTTGCTGGATCACATGTGGACTCACACCGATCAAAAGAAATTTCCTTGCACAATTTGCGATAGAGCTTTCAaACGTGAGATGACGAAAAGGAACGCTGAGATCGTGTTACAGTATTCCACGCTGTATCCGTTCAGGTTGCGAGGCAAAATCTTGATCTGCGTATACTGCTGCGACGAATTTGACGAGCCGGATCCGTACAGATGCCATATGGATGAGATGCACAAGACTCCTATACTTTTCACGGCGTTTGCGCACACGGGGCGCAACCGGGACTACCTCAAGGTCGACTGCGTCAATCTCAAATGCAGGCTGTGCAACGCACCTTTCGATAACGTCAATCAAATCGCTAAACACCTGAAAAGCAACCACAATAGCGGAGATATCGAAAACATGAATTTGAACTATGAAGTGGCACTGCAGCCGTACCGTTTGATTAAAGACAAGTGGCTCTGCATCACGTGTAATATGAAAATGCCTTCGCTAGCCAAGCTACGCAGGCATATGTCGACGCATTACGCGGGCTACGTCTGCGATATTTGCGGAAGTAGCTACATAAAAGTTGACAGTCTGCAGTATCACGTTAAATCTACACACTCTGGCAAGTTCCCTTGCAGAAAATGCTGGAAGGTTTTCTCgacaaaagaagaaaagaaacagCATGCTAAATCGTCGCCATCTTGCCGAACTGTGTCTACTAATCAAGAAGCAAAGACTATGTAa
- Protein Sequence
- MCVYCCDEIEDPENFRSHMDQLHDTANLDIAFAHIKSRNRISDKGYLKVDCMNLKCRLCDKQCQSVALVAEHLKDYHENDEIKSLDLRYEVGLCPFSLNKDKWICALCDLKVPTLTSLSRHMSSHYADNVCNVCDKKYISAHALKFHIKHNHSNVETCRKCNMEFSTIEKKKEHLKTSAKCLGFCCIYCNERFSSWEHKQRHLVSKHDAKARSYPCPDCETVFDSRSNFYYHYNTTHADLPHMCSYCGKQFLKKCQLVNHLGSHTGEEIQHKCSICAKIFTRRQGLQEHLWTHSKNKRFSCTYCDKKFTKRNCELVRRNAEIVLQYSTLYPFSYRGKTLICVYCFYEIQDPEGFRCHMDEAHSAVDPKAAFARLHSKRDYVKVDCVNLKCRLCDEPFDGIPEISHHLLDHHNHKEDIEKIDLNFDVGLVPYRLVKDNLSCLLCKMKQPTLVKLIRHMSSHYAIYACNDCDKMYNCANSLKFHIRYHHSGKYACRKCWTEFASKEERKEHIRVSSNCWGYACDDCKERFISWDLKQVHLVSKHNVQPLSYPCADCGLVFESRLHFYSHYHKMHSDAAFVCSYCGEKYETKTRLDDHLLSHTSEKRFMCSICERKFSRKRSLLDHMWTHTDQKKFPCTICDRAFKREMTKRNAEIVLQYSTLYPFRLRGKILICVYCCDEFDEPDPYRCHMDEMHKTPILFTAFAHTGRNRDYLKVDCVNLKCRLCNAPFDNVNQIAKHLKSNHNSGDIENMNLNYEVALQPYRLIKDKWLCITCNMKMPSLAKLRRHMSTHYAGYVCDICGSSYIKVDSLQYHVKSTHSGKFPCRKCWKVFSTKEEKKQHAKSSPSCRTVSTNQEAKTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -