Prec035984.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720264.1:1857348-1863852[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.2 1.3e+02 4.5 5.5 1 23 101 124 101 124 0.94 2 21 0.18 19 7.1 0.1 2 23 151 175 150 175 0.91 3 21 1.5 1.6e+02 4.2 4.3 1 23 197 219 197 219 0.98 4 21 0.97 1e+02 4.8 0.3 1 23 223 246 223 246 0.88 5 21 0.00031 0.033 15.8 1.8 1 23 252 274 252 274 0.98 6 21 0.00016 0.017 16.6 2.9 1 23 280 303 280 303 0.96 7 21 0.00048 0.051 15.2 0.2 2 23 311 333 310 333 0.96 8 21 4.5e-05 0.0048 18.4 2.9 1 23 339 361 339 361 0.97 9 21 5.2e-07 5.6e-05 24.5 0.5 2 23 368 389 367 389 0.97 10 21 0.13 14 7.5 2.4 1 22 395 416 395 416 0.96 11 21 0.023 2.4 9.9 1.6 1 23 605 628 605 628 0.94 12 21 0.27 29 6.5 0.0 3 23 658 679 656 679 0.95 13 21 0.079 8.3 8.2 0.5 2 23 702 723 701 723 0.96 14 21 0.0023 0.24 13.0 0.1 1 23 727 749 727 749 0.95 15 21 0.14 14 7.5 4.0 1 23 754 777 754 777 0.96 16 21 0.016 1.7 10.4 1.3 1 23 788 811 788 811 0.88 17 21 0.12 12 7.7 2.9 1 23 929 952 929 952 0.94 18 21 2.4 2.5e+02 3.6 0.1 2 23 979 1001 978 1001 0.92 19 21 0.02 2.2 10.0 2.2 2 23 1024 1045 1023 1045 0.98 20 21 0.005 0.53 12.0 0.1 1 22 1049 1070 1049 1072 0.89 21 21 0.063 6.7 8.5 1.2 1 14 1077 1090 1077 1100 0.88
Sequence Information
- Coding Sequence
- ATGCCAAATAAAACTGGTGgTATCCTCAGAGACTACAAACCCATAAAACTGGAAGTTGAATGGGATGTAGAAAAAGATATGCAACTAGCAAGTATAAAAGAAGAAAATTCATCTTCCAATGACAAAAAGAAAAAAGGAAAACGGGTGAATAAGAAAGAACTCGATAATTTTCGACCACTTAAGATTAAACCACCGCCTAAAGCAGAGATATTAGACGTGGATAAACACAGATACAATGTGCGAGCGATATTGCAATACTCTAATGCAACACCAATCAGGGCACACTACGCAGGAAACGGATACGCTTGTTGCTTCTGCAAGCAATACTTTCACAAAGCATCAGATCTCAAGGATCATACACTTCAATCTCACGACGATCaaactaaaagaaaatatatgcAAAAAGCTTTCCTTTTCAAATTGTTTGTTAAACTTGATATAACGTCACTACGTTGTGGCGTCTGTACATCTGAAATTTCTTTTGAAACTCTAGACAACCTAATAGAACATTTAAACTCAATACATCAAAAAGGCATACATACTGACataaagaatcaaatcatgtgCTTCAAGCTGGGCGAGGACGTTTTTAGATGTTTTATATGTTCTGTAGAATATCACAGTTTTAAAAATTTACTCGAACACGCTCACACGCACTATAGAAACTTTATATGTGAAACTTGCGACGCCGGATTCATCAATAGGCTAAAATTATATGGACATGTCTATAACAAACATAAAGGTGCCGGGTCGCATAAATGTAGCACATGTGAGAAAATTTTTGACACTCCCATAAAGTTAAAAACCCATGAAAGAATACACTCCGGTTCCGTTCTATATAAATGTCACGAGTGCGGTGAGAAATTCTCGAAGAAGAAAGAAAAGCGAGATCACATGATTAACATACACGGTGCTGAGTTTGCTAGGATAAAATGCACAGCTTGCGAAAAAATGTTCATAAGCAAAGCGTCCCTTAGCGTCCATATAAACAGAGATCACTTGATGGACAGGCGACATCAATGCGAACTATGCGACAAGACATTCTTCACCTCATCGTTTTTGCGAGACCACATGGTGTCTCACTCTAGGGTTAGAGAGATACAATGTGACGAATGTCCGAAAACCTTTGCCAGAAAGAAAGCGTTACGCGAGCATATGAAGTCTCACACGGGTGATCGAAGATTCAAGTGTACTTTCTGCGACATGGCCTTCTTGCAGAAGTGTAGCTTGAAGGGGCACTTGAGAAGTGTCATCGTCAGAGACCACCACAAAGCAACCAAATCGGAGGTAGAAAATTCTTGGGGTGTAACTATTGTTAAAGTCAAAGGTCCGAAAACTGAAAATCCCATACATGATGATAGTAATGttaaaaggttaaaaaataaatctgatACTATGAAGCAAAAATCTAGGAAATTTAATAAAGAGCAACTTACGATTTTCCAAAAACCTTTTGATATATCTACTGCCGATAGCAAACCTAACACATCCAAAATGAACAAACGGTTATTAGAGAAAAATGCACCAAAATCTGATACGAGTGttaggaaaattaaaataaaccccCCATCTGATTTAATTATGACACAAATTAAAGCGTCAATTTTTAAAAACGAGAGTCTTACTGTTGTCACACCTAAACCCCAAAGAAAAAAGGAGCCCCTTAAAATCGAAAGACCAGTCCAAAGAATGAAAATTGTCCCACCACCAGACATGGACTTCATGATGGAACTAGACAAGCATAGATTCAACATACGCACTGTGATGCAGAACTCAAACGCGACTCCAATTAGAAATCATGTAAAAAGCGGCTTCGTTTGCTGTTTCTGCGACGCTCACTTTCCAAAACCAGCAGATCTTAAAATTCACACTATTCAAAGTCACACTGACGATGATAGCAAAGATAAGTTCTTCCGCAAAAAGGCTGTTTTATACTCGTTCATGGTCAAACTTGATATAACACATCTGGCTTGCAATATCTGCCAAATAGCAATGGAAAACCTCGAGCAACTTATAACCCATCTTAACAGCATGCACCAGAAAGGTTTACACACCGATATAAAGAATCACATTGTATGTTTTAAATTCGACAGCGATGTCATGAGATGCCTAGTATGTGCACAAGAGTTTAACAGTTTCAAACTGCTGTCCGAACATATGAATCAGCATTACACTAACTTTGTATGTGATGAATGCGGCGCTGGGTTTATAAACAGAAGACAGTTGCTTCTACATTCTGACAAACACAAAGTTGGTTCACACAAATGTGGTTCGTGTGATAAGGTGTTCCATTCCTTAAAGAGGATGAGAATCCATGAACGCGTCACTCACGTTTACAAGTCTGGGCAGGGCACCCATGGTTTTCGGTGCAACATTTGCAATGAAAAGTTTAAGGATAGAAAAGCAAAGTCTGACCATGTGACGCTGACTCACGGACATGATATTGATAGTATCAAGACCAGAGATGCGAACCCTATTAAAAAAGAACTAGACGTTTCTTGGGAAGTAACTATTGTTAAACTAGAAGACACTGACGATAAGTCTAAAGCAGTTAAAAAACGACCtaagataaaaatacaaatgcCAGATGAAATCATCATTCAACGGACGAATATTAAACCATCAAAAAACGTTAATAAACATGGcgaaactttaattaaaaaaacaaaagccaAGACAGACGCCCAAGATACTTCCGAACTCGACAAACACAGACATAACATTCGCACAATACTGCAGTATTCTAATGCAACTCCGATTCGTACGCATTCGATAGCAAGCGGTTATGTCTGTTGTTTCTGCAAATCTCAATTCTCTATGGCTTCTGACCTCAAAACACACACAATCCAAAGCCATGATGAAGAAACCAAAAGCAAATTCATGCAAGGATCAACACTGTTTACATTCCTCGTCAAATTGGACATAACAGCACTCTCCTGCACCATTTGCAATGTACAAATAGATGATCTGGAGCAACTGGTCGTCCATTTCAATAATATGCACGATCAAGAACTGCACACAGACATCAAGAGCTACATTGCATGCTTCAAGCTGGACGGTGAAGCTATGAAATGTCATATTTGTGAAGCGGAATATAAAAGCTTCAAGTTTTTACTGGAGCATATGAATAAACATTCGACTAATTTCGTCTGCGATGAGTGTGGAGCTGGGTTTATAAATCTGGGACAGCTACGGTACCATTCTGATAATATGCACACAATCGGCGAATACAAATGTGAAACTTGTGATAAAGTTTTTCCATCAGCGAAAAAGAAGTATTTTCACGAGCGGGCTACGCACTTTCAGTCTCCTAAAAAGAGGTATCTATAG
- Protein Sequence
- MPNKTGGILRDYKPIKLEVEWDVEKDMQLASIKEENSSSNDKKKKGKRVNKKELDNFRPLKIKPPPKAEILDVDKHRYNVRAILQYSNATPIRAHYAGNGYACCFCKQYFHKASDLKDHTLQSHDDQTKRKYMQKAFLFKLFVKLDITSLRCGVCTSEISFETLDNLIEHLNSIHQKGIHTDIKNQIMCFKLGEDVFRCFICSVEYHSFKNLLEHAHTHYRNFICETCDAGFINRLKLYGHVYNKHKGAGSHKCSTCEKIFDTPIKLKTHERIHSGSVLYKCHECGEKFSKKKEKRDHMINIHGAEFARIKCTACEKMFISKASLSVHINRDHLMDRRHQCELCDKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTFCDMAFLQKCSLKGHLRSVIVRDHHKATKSEVENSWGVTIVKVKGPKTENPIHDDSNVKRLKNKSDTMKQKSRKFNKEQLTIFQKPFDISTADSKPNTSKMNKRLLEKNAPKSDTSVRKIKINPPSDLIMTQIKASIFKNESLTVVTPKPQRKKEPLKIERPVQRMKIVPPPDMDFMMELDKHRFNIRTVMQNSNATPIRNHVKSGFVCCFCDAHFPKPADLKIHTIQSHTDDDSKDKFFRKKAVLYSFMVKLDITHLACNICQIAMENLEQLITHLNSMHQKGLHTDIKNHIVCFKFDSDVMRCLVCAQEFNSFKLLSEHMNQHYTNFVCDECGAGFINRRQLLLHSDKHKVGSHKCGSCDKVFHSLKRMRIHERVTHVYKSGQGTHGFRCNICNEKFKDRKAKSDHVTLTHGHDIDSIKTRDANPIKKELDVSWEVTIVKLEDTDDKSKAVKKRPKIKIQMPDEIIIQRTNIKPSKNVNKHGETLIKKTKAKTDAQDTSELDKHRHNIRTILQYSNATPIRTHSIASGYVCCFCKSQFSMASDLKTHTIQSHDEETKSKFMQGSTLFTFLVKLDITALSCTICNVQIDDLEQLVVHFNNMHDQELHTDIKSYIACFKLDGEAMKCHICEAEYKSFKFLLEHMNKHSTNFVCDECGAGFINLGQLRYHSDNMHTIGEYKCETCDKVFPSAKKKYFHERATHFQSPKKRYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -