Prec035933.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720264.1:1442516-1450998[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.025 2.6 9.8 0.0 2 22 2 22 1 24 0.88 2 19 5.8 6.2e+02 2.3 0.6 2 23 51 73 50 73 0.93 3 19 0.6 64 5.4 0.2 5 23 179 198 176 198 0.92 4 19 1.1 1.2e+02 4.5 0.6 2 23 223 245 222 245 0.94 5 19 0.14 15 7.4 0.1 2 23 268 289 267 289 0.94 6 19 0.00012 0.012 17.1 0.6 2 21 294 313 293 314 0.93 7 19 0.00094 0.099 14.3 2.2 1 23 347 370 347 370 0.95 8 19 4.2e-06 0.00045 21.6 1.1 1 22 377 398 377 400 0.90 9 19 0.00036 0.038 15.6 0.1 2 23 406 427 405 427 0.96 10 19 0.063 6.7 8.5 0.0 1 23 457 480 457 480 0.92 11 19 2.7 2.8e+02 3.4 1.8 2 23 509 531 508 531 0.94 12 19 0.72 76 5.2 0.3 3 23 558 578 556 578 0.92 13 19 0.00032 0.034 15.7 0.2 1 23 582 605 582 605 0.95 14 19 1.5 1.6e+02 4.2 0.2 1 21 609 629 609 630 0.94 15 19 0.099 10 7.9 1.7 1 23 637 660 637 660 0.93 16 19 0.00021 0.022 16.3 1.8 1 23 667 690 667 690 0.96 17 19 7.2e-06 0.00077 20.9 1.3 1 23 695 717 695 717 0.98 18 19 0.0007 0.074 14.7 0.5 1 20 723 742 723 745 0.96 19 19 4.9e-05 0.0052 18.3 1.7 1 23 751 774 751 774 0.96
Sequence Information
- Coding Sequence
- ATGGTCTGCGTGTACTGTGGCGAAAGCTACGAGGACCCTGCTTTATTTAGGGAACACAATGAGCAAGAACACAAAGAATTTAACGCTCAAATAGCCTTGTACCACATAAAAGATTTGTCTTGTGATATCAAAGTCGATTGCACAGATCTCAGATGTCGTCTTTGCTCCAATCCTTTCGAAAATTTAGATGTTATCGCTAAGCATCTTCATAAAGACCACAACATCTCTGTGAAGTCTGACGTTCACTTAGGAATGctaccttttaaaataaataaggataGCGAGACTTTTCTAGAGGCATGTCTATTTAGGCGTCACATGGTTAAGGAACACGAAAACTTTGATAAACACTACGCATTTGCACACGTCTCAGTCGGCCAGCTAAAAGTTGATATCACCGAGCTCAGCTGCAGAATATGCTCCATGCCATTTGAAATAAATCCGCTGACCATCGCCAGAAAGAACGCACGCGCGATCATTGAACATGCAACAGCATACCCATTTAGACTCCCCGAAAGTTCTATGATGTGCATATTTTGCAATGAAACTTTCCCAGAAGCAATGCTGTTCAGGCTGCACATGGCCAAAGAGCATGAGAACTTTAATTTACAGCTAGTTTTCGCACACGTCTCCGACGGACAACTCAAAGTTGACATCACAGAACTAACCTGCCGATTATGCTCCAGGGCATGCGATAACCTCCAACAAATAGCTAACCATTTGATCTCTGACCATTCTAAAAAGATAGATCTCAACAACGATCTTGGATTACAGCCATATCGCTTGATAAATGAAAAGTTATCTTGTgcaatttgtcaacaaaagacTGCTAATCTTGTAGCATTAAGCAGGCATACTGggaaacattttaaaacatgtATCTGCGAGCATTGTGGGAAAGCGTATGCCACAAATGGTTCTCTGATGAATCACGTAAGAAATTCGTGCACAAAAGATGGGCAAATGCGATGCAGGAAATGTAGGAAGGTCGTTAGCTCAATCGTGGAGCATTTGAAAGCCTCCGCGTTATGCCGACAGCATATTTGTAGTGTTTGCGGCGAAAGGTTCGCAACGTGGAACCATAAACATGCACACATGGAGTCTGCTCACTCTATACCCAAAAAGACGTTTCGATGTCCAGAATGCAACGAAGTTTTTAAATCTAGTAGCAACTTGAAAGACCATTTCAGTTTTGTTCATACTAAAGATTTCCTTGAGTGCGTACAATGTGGGCTGAAGTTTGCTACGCAGTATAGACTAGATCGACACATGATCGTGCACACCGaACTCAAAGCACACGCAAAACGGAATGCTGAGCTCGTGTTAAAGCATTCGACACTGTACCCGTTCAGGTTGCAGGGGAAAATCTTCATATGTGTTTACTGCGGCGAAGACTATGAAGATCCCCTGGCATACAGGACGCATATTGACGAGTCGCATCCTAAAGCGCATGTGTATACAGCTTTTGCCCACCTCAGCAAGTGCAGATCTAGAGAATACCTGAAAGTAGACTGCGTTAATTTAAAATGCAGGTTATGCGATCAGGCATGCGATACAGTCCATGATATAGCTCTACATCTCAAGTATAGTCATCCGGACGTATCGCAGGACCTCGACTTAGATAATGAAATTGGGTTACACCCCTATCGATTGCTATATAACAAATGGAACTGCATGTTGTGCGCTATGAAACTGCCTAGTATGACCAAGCTTGCAAGGCACATGTCCACCCACTACGCTGACTACGTTTGCGATATCTGCGGCAAAAGCTATCTGAACGAAGCAAACCTGAAAATTCACGTCAAGTTTAGCCACTCCGACAAATATATCTGCAGGAAATGCATGGAGGAGTTCCCAACAGCGAACGATAAAAGGAAGCACTTAAAAGAGTCTAAGAAATGCATGGCGTATGCCTGCGTCCATTGCAGAGAGAGATTTGCCTCTTGGGAGTTGAAGCACAAACATTTAGTCAGCGAGCATAATGTCCAGGCGGCGACTTACCCATGCCCTGATTGCCAAACCGTCTTCAACACCCGGAAGCATTTCTACGATCATTACATAATTACGCATTCTGACCAGGCTTTTGAATGTTCGCGCTGTGATAAGAAGTTTAGAAGTAAAACCTTGCTAGAGGATCATCTGATCACTCACACCAATGAGAAACAGTTTGAATGCGTTGTGTGTTCTAAGTTATTTACAAGGAACAAGGCTTTGCGCCAACACATGTGGCTCCATAGTGAGAAGAAAAGATTTTCTTGCGTTTTGTGCGATAGGACATTCAATCAGAAAGTTAGTTACAAAACTCATATGAAAAACATACATCCTGATGTTTTTCTTGATGTTTAA
- Protein Sequence
- MVCVYCGESYEDPALFREHNEQEHKEFNAQIALYHIKDLSCDIKVDCTDLRCRLCSNPFENLDVIAKHLHKDHNISVKSDVHLGMLPFKINKDSETFLEACLFRRHMVKEHENFDKHYAFAHVSVGQLKVDITELSCRICSMPFEINPLTIARKNARAIIEHATAYPFRLPESSMMCIFCNETFPEAMLFRLHMAKEHENFNLQLVFAHVSDGQLKVDITELTCRLCSRACDNLQQIANHLISDHSKKIDLNNDLGLQPYRLINEKLSCAICQQKTANLVALSRHTGKHFKTCICEHCGKAYATNGSLMNHVRNSCTKDGQMRCRKCRKVVSSIVEHLKASALCRQHICSVCGERFATWNHKHAHMESAHSIPKKTFRCPECNEVFKSSSNLKDHFSFVHTKDFLECVQCGLKFATQYRLDRHMIVHTELKAHAKRNAELVLKHSTLYPFRLQGKIFICVYCGEDYEDPLAYRTHIDESHPKAHVYTAFAHLSKCRSREYLKVDCVNLKCRLCDQACDTVHDIALHLKYSHPDVSQDLDLDNEIGLHPYRLLYNKWNCMLCAMKLPSMTKLARHMSTHYADYVCDICGKSYLNEANLKIHVKFSHSDKYICRKCMEEFPTANDKRKHLKESKKCMAYACVHCRERFASWELKHKHLVSEHNVQAATYPCPDCQTVFNTRKHFYDHYIITHSDQAFECSRCDKKFRSKTLLEDHLITHTNEKQFECVVCSKLFTRNKALRQHMWLHSEKKRFSCVLCDRTFNQKVSYKTHMKNIHPDVFLDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -