Prec032530.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- ZNF711
- Assembly
- GCA_963082625.1
- Location
- OY720259.1:9798984-9802020[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.073 7.7 8.3 0.7 5 23 355 373 353 373 0.96 2 12 0.04 4.2 9.1 0.2 3 23 381 401 379 401 0.91 3 12 0.99 1e+02 4.7 0.1 2 23 409 430 408 430 0.90 4 12 5.1e-08 5.4e-06 27.7 0.5 2 23 436 457 436 457 0.98 5 12 0.00033 0.035 15.7 2.5 1 23 463 485 463 485 0.98 6 12 0.00021 0.022 16.3 0.0 2 21 494 513 493 514 0.93 7 12 0.00044 0.047 15.3 0.2 1 23 549 572 549 572 0.96 8 12 0.001 0.11 14.1 0.4 3 23 581 601 580 601 0.98 9 12 9.7e-05 0.01 17.4 0.7 1 23 611 633 611 633 0.98 10 12 3.1e-05 0.0033 18.9 4.5 1 23 639 661 639 661 0.98 11 12 0.0032 0.34 12.6 0.3 3 23 669 689 667 689 0.98 12 12 0.00015 0.016 16.8 0.8 1 23 695 718 695 718 0.96
Sequence Information
- Coding Sequence
- ATGGAGACGTGGACAGATCTATGTCGCTGTTGCCTATCTGCCAATTCCGAATACTCAATTTTGGATGAAGAACAAAACATTGTACAGAAGTTTCTTGAAATAACAACTGTAGAGGTAAAGCTAGATGATGGTTTGCCCCAGAAGCTATGCAACGACTGCTATACAATCTTGAATTCAGCACACCAGTTCCGGAAGCAGTGCATCAAGATGGATACGGAGCTGAAGTTACAACTCAACCAGCTCCTCACACAGTGCAATGATGATTATATCAATGAACTAGAAAATATGGATGAAACAGAAAGCCAGCAGAATCAGGATGTCGAATTTGCCAATGATCCTATGAAACAACTTGAAGAAATCATAAAAAAGGAACCTATGGACAAGGATGATGATTATTACTATGTCCTGGTGATAGATAATCCAAAGGACAAGGAAAATGTAGATGATACAAATATTGATAAAGCAATTATTAAAACTGAAGTTGTGGAAGAACTGAAACCTGTTCAAATCATGGAACAAGTTGAAAAACCTGTGGAAAAAAGTCCTAAAATTAGTAAAGTGAATGCAATCTCTGATGTCTCAATTATTGAACATAAAAATACTGAGTTTGAGCATTCCATGGACTCGTTTCTCATCAGTAACAATGCCATTTCAGCGAATGTTCCTGCCACAATTCTAGAGAATGAAGAAGatcaggatgatgatgatgataatgataacaatGTGACAGTTTACGAGAACAATCAAGATGTGGCTTTAGCAGATGAAAACAGTATCATAACTGATGATCAGAATTTGATAAAGATATTGACAAGTCAGGAGTTCAGTGAAGACGGCACGGGAGCCATATTCTTAAAACATGACGGCATTAACTATATTACTGATGGCACACTTGTTGGGAATGGCGAAGATGATCAAGATGAAGATTCTCCAGAAGTGATCTATTATGAAGGAGACACCGAATCACAGTTCCAAATAGTGAAGTATGATGGGTCAGAATTGGTCATTGAGTATGCTGACGACAGCAACCAAGTGTCCTCAGCCACACCAACATTCATGTGCGAATGCAGTGAACAGTTCACCGACTACACTGAGTACGAGACGCATCAGAAGAAACACAACCCCGCTGGCGAGCACCTCTGCAACTTATGCGGCAAAGGTTTTGAATCTGCAGAGATTCTAACTGGCCATATGGTCTTGCACAATGTCTCTGGACTACTCCTCCAGTGCCCATTCTGCGAGGCTGTCATGAAGAGGAGTGCTCTAACGCAGCATATTAAATATGCTCACAACCACATCAAGCCGCAGTGCGAGATTTGCAACAAAACATTTGCAAATCCTAACAACTTGAAGCGCCACATGATGATCCACACAGGTGTGAAAGAATTTGAATGTGATTTGTGCTTTAAGAGATTTAGCCAAAAGATAACTATGCAAACCCATAGACTGACTCACATAAATCCTGCACAGCCTATGTTGACCTGCCCAGGATGTGAAATCACATTCAAAACTAAGGAGCTTCTAGCAGCGCATATAGAAAGTACCAAATGCACCAAATCAAAACTCGTAGATTCTGAAGAAAAGGAAGAGTTGATCAAAGCTGTCAAAAAGGAGGTTAAAACAAGCCTAGGAAAACTATTAGGTTATGCATGCTCTCTTTGCAAGAGAATGTTCTCCCTAGAGTCTGCTTTAGAATCCCATATTGAGTCTACACACATCATAGATCCAGCAGAGCTCCTTTGCTCGGAGTGTGGGGAAGTTTGTAGTTCGAAAAAAGAGATGGCAGCACACATTCTGAACCATGATAAGCGTAAAATATTCGTCAAACGCTTTGAATGCTCAACTTGTGGTAAAGGGTGTTCCAGTCAAGCTATGCTGTTGATGCATGAAAGGGTACATACAAACGAGAGACCATACTCTTGCCAACTGTGTCCGTTGAAGTTCAAAACTAAAACGCATCTGCGGACTCACCAATTGACACATACTAGGGAGAAGAAATTTGGTTGTTCTGTTTGTATGAAGTTCTTTGCTCTGAAGGGGAATTTGGTGGTCCATTTGCGCACGCATACTGGGGAGAGACCGTACGTGTGTAACGATTGTGGGGACGCCTTTATAGACTCGAAGTACTTGAAGAAGCATAAGTTAAAGAAGCATGCTACGGATAATACCGCATGGAATCAgtttttgaaagtgaaatatgagGATGATGAGTCTtaa
- Protein Sequence
- METWTDLCRCCLSANSEYSILDEEQNIVQKFLEITTVEVKLDDGLPQKLCNDCYTILNSAHQFRKQCIKMDTELKLQLNQLLTQCNDDYINELENMDETESQQNQDVEFANDPMKQLEEIIKKEPMDKDDDYYYVLVIDNPKDKENVDDTNIDKAIIKTEVVEELKPVQIMEQVEKPVEKSPKISKVNAISDVSIIEHKNTEFEHSMDSFLISNNAISANVPATILENEEDQDDDDDNDNNVTVYENNQDVALADENSIITDDQNLIKILTSQEFSEDGTGAIFLKHDGINYITDGTLVGNGEDDQDEDSPEVIYYEGDTESQFQIVKYDGSELVIEYADDSNQVSSATPTFMCECSEQFTDYTEYETHQKKHNPAGEHLCNLCGKGFESAEILTGHMVLHNVSGLLLQCPFCEAVMKRSALTQHIKYAHNHIKPQCEICNKTFANPNNLKRHMMIHTGVKEFECDLCFKRFSQKITMQTHRLTHINPAQPMLTCPGCEITFKTKELLAAHIESTKCTKSKLVDSEEKEELIKAVKKEVKTSLGKLLGYACSLCKRMFSLESALESHIESTHIIDPAELLCSECGEVCSSKKEMAAHILNHDKRKIFVKRFECSTCGKGCSSQAMLLMHERVHTNERPYSCQLCPLKFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCNDCGDAFIDSKYLKKHKLKKHATDNTAWNQFLKVKYEDDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00662446;
- 90% Identity
- -
- 80% Identity
- -