Prec001582.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720235.1:26237265-26242355[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0011 0.12 14.0 7.2 1 23 242 264 242 264 0.98 2 10 5.3e-05 0.0056 18.2 1.6 1 23 272 295 272 295 0.96 3 10 7.8e-05 0.0082 17.7 0.7 1 23 301 323 301 323 0.98 4 10 0.00027 0.029 15.9 3.8 1 23 328 350 328 350 0.98 5 10 1.8e-05 0.0019 19.7 3.8 1 23 356 378 356 378 0.95 6 10 3.2e-06 0.00034 22.0 0.6 1 23 384 406 384 406 0.99 7 10 3e-07 3.2e-05 25.3 1.3 1 23 412 434 412 434 0.98 8 10 8.9e-05 0.0094 17.5 0.2 1 23 440 462 440 462 0.98 9 10 0.00011 0.012 17.1 2.1 1 21 468 488 468 490 0.96 10 10 3e-05 0.0032 18.9 0.3 1 23 496 518 496 518 0.98
Sequence Information
- Coding Sequence
- ATGGAGCTGAGCATATACAGTTTTGACCGAATATGCAGGGCCTGCTTGTGTGCATCTGATAACATGAAATCGCTCTTTACAAAACTCGAAGGCGATAATCAAAGTTTGATGGATTTATTCATCCTAGCAGCTAATTTAGACGCCAGAGATCACGATGGGCTGCCGAAACAAGTCTGTGGTGACTGCGAACTAATTTTATACAAATCTGAAGAGTTTAGGAAAAGATGTTTGCATTCGGAAAACGAactaaataaagttattattagtGGCCCCACTCGTAGTACCATTACTGAAAGCTATGGAAATGATGACAAGAACAAgctatatatagataaacttgCAGAATTTGGCCTAGACAAGAAAGATTTCGGTGACTTATGTGTGACTTTTGGCCCCGCTAGTAATACACACTCGCTTATAGCCACCCCCACgagggacgtcagtgcagatctagtatcccccaccagaaatACAGACACACACGATGTTAAAGAAGAGTATTACGAAAACGACCAAGATTTCCATGACTTCGACGACACAGAACCGACAACAGAATACAAACTATGTACAAAACAGCTAAAGTCCACAAACACACCAAGTAAAAAGCCTAAATCACAGAAGGGAGCCAAAAGCAAAGAGTTGCATgtaacatacaaatctttgaTACAATTTGATGATCACCTAGAAACAATAAACACAGAAAATAAGGAAAAGGAACTCTCATACCAATGCTCATTATGCTTCCGTCGTTGCAAAACAAAGAAGACCCTCTCAAAACACATGAAACTCCATGAACGGACAGACAACATAAAGTATACTTGTGATAAATGCAAACGGGAGTTTAAGTACAAATCATTCCTTGAGAATCATGTTATATCGGTTCATATGCACAATAATGATTATAATTGTAACATTTGTAAAGATACATTTAAGAGTAAGGAAAGTTTGGAAGTTCATTTGGATACTCATAAGGATAAGAAACATGTCTGCAGTATTTGCAGCAAAGCCTTTATAATGTTGTGTACACTGAAGGATCACATGAGGAAGCACACCGGTGAGAAGCCGTTCCTCTGCTGCACATGTGGAAAAGGCTTCAGCCAGAAGACGAACCTGGCGCAGCACACGCGGAGACACTTAGGCGTGAAACCGTACCAGTGTTCCATCTGTACTAAGAGTTTCGTATCGAAGGGCGAGCTGGACGCGCACAGTCGCAAGCACAGCGGGGCGCACCCGTTCGTGTGTGATGACTGCGGTTGTGGGTTCACCACGTCCAGCGCTCTCGTCAAGCACAGGAGGACGCATACAGGCGAACGCCCGTACGCCTGCGATCTTTGCCCCATGCGTTTCGCCGCCTCAGGCACTTTGAAGAACCACCGGCGCACGCACACCGGCGAGCGGCCGTTCCAGTGCTCGCTGTGCACTAAGGCGTTCGTGCAGCGGACAGACCTGATCAGCCACATCCGCTGCCACACCGGCGAGCGGCCTTACGTCTGCCGCGTGTGCGGACAGGCTTTTAGGAAGCATGCTGCGTTGAAAGCGCACGCTAAAGTGCATAAGGATGCAGTGTGTCTGTGA
- Protein Sequence
- MELSIYSFDRICRACLCASDNMKSLFTKLEGDNQSLMDLFILAANLDARDHDGLPKQVCGDCELILYKSEEFRKRCLHSENELNKVIISGPTRSTITESYGNDDKNKLYIDKLAEFGLDKKDFGDLCVTFGPASNTHSLIATPTRDVSADLVSPTRNTDTHDVKEEYYENDQDFHDFDDTEPTTEYKLCTKQLKSTNTPSKKPKSQKGAKSKELHVTYKSLIQFDDHLETINTENKEKELSYQCSLCFRRCKTKKTLSKHMKLHERTDNIKYTCDKCKREFKYKSFLENHVISVHMHNNDYNCNICKDTFKSKESLEVHLDTHKDKKHVCSICSKAFIMLCTLKDHMRKHTGEKPFLCCTCGKGFSQKTNLAQHTRRHLGVKPYQCSICTKSFVSKGELDAHSRKHSGAHPFVCDDCGCGFTTSSALVKHRRTHTGERPYACDLCPMRFAASGTLKNHRRTHTGERPFQCSLCTKAFVQRTDLISHIRCHTGERPYVCRVCGQAFRKHAALKAHAKVHKDAVCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -