Basic Information

Insect: Pasiphila rectangulata
Gene Symbol: -
Assembly: GCA_963082625.1
Location: OY720236.1:3669811-3683422[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.5 9e+02 1.8 2.4 2 21 163 182 163 183 0.92

2 12 0.0061 0.65 11.7 0.1 3 20 198 215 197 217 0.97

3 12 0.018 1.9 10.3 0.1 2 23 259 280 258 280 0.96

4 12 0.13 14 7.5 0.3 2 20 350 368 349 369 0.89

5 12 0.00036 0.038 15.6 1.7 1 23 378 401 378 401 0.97

6 12 2.9e-05 0.0031 19.0 1.2 1 23 422 444 422 444 0.98

7 12 5.3e-07 5.6e-05 24.5 1.8 1 23 451 473 451 473 0.98

8 12 2.7e-07 2.8e-05 25.4 1.4 3 23 487 507 485 507 0.96

9 12 1.2e-06 0.00013 23.4 0.8 1 23 513 535 513 535 0.99

10 12 1.6e-06 0.00017 22.9 2.8 2 23 542 563 541 563 0.96

11 12 1.4e-07 1.5e-05 26.3 1.5 1 23 569 591 569 591 0.99

12 12 0.0075 0.79 11.4 0.1 1 23 597 619 597 619 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.5	9e+02	1.8	2.4	2	21	163	182	163	183	0.92
2	12	0.0061	0.65	11.7	0.1	3	20	198	215	197	217	0.97
3	12	0.018	1.9	10.3	0.1	2	23	259	280	258	280	0.96
4	12	0.13	14	7.5	0.3	2	20	350	368	349	369	0.89
5	12	0.00036	0.038	15.6	1.7	1	23	378	401	378	401	0.97
6	12	2.9e-05	0.0031	19.0	1.2	1	23	422	444	422	444	0.98
7	12	5.3e-07	5.6e-05	24.5	1.8	1	23	451	473	451	473	0.98
8	12	2.7e-07	2.8e-05	25.4	1.4	3	23	487	507	485	507	0.96
9	12	1.2e-06	0.00013	23.4	0.8	1	23	513	535	513	535	0.99
10	12	1.6e-06	0.00017	22.9	2.8	2	23	542	563	541	563	0.96
11	12	1.4e-07	1.5e-05	26.3	1.5	1	23	569	591	569	591	0.99
12	12	0.0075	0.79	11.4	0.1	1	23	597	619	597	619	0.97

Sequence Information

Coding Sequence: atggCATCTACAAATCAAAAAATAGAGATAAAGATAGAAAAACTATGTCGAACGTGTTTATCGAAAGATAATGAATTGAATTCATtgtttgatgtaaatattggtGAAGTATCCTTGGAGTTCATAGTGACATCTATCACGGGACTAAAGATTCGCAAAGGAGATGGGCTACCTACTACAATATGCTGTGACTGCAAGGACAAAGCAGAAAAGGCATTTGAGTTTAAAAATAGATCACAAGAagcatataattttttaaaaggCTTCTACAAAGacaataaaagtattttgtttgaCTATGAAGATTCTACTACTCAGaAATCCATCGACCTAAAGACCGAGGACTCTGAGACATTCAGTGATCGTGAGGATTTTTCGGATGTTGATTACAGTTTGCCTCTAAAAAATGGACCACCAGATATAAATATCTTACCAATGGAAATCAAGGTGAAAGTAAAACATGAAAGCTCTAATCGAGAATTCAATGAATGCAAAAAATGTTGTCTGGTATTTGAAACAAGAGCAAAATATCAAGaacacaagaaacaaaaatgcGTTAAAGTGGAATATGAAGATTCAAGTGGTGCACATTGCCCTATCTGTGGAACAAGCTATGATGGTGCTAAGAGCCTGTCTAATCACATGTGGGAATTTCATGCTGATGTAATGGGTCCTAAGAAAAGGGGGAGACCTAAAAAAGCTATGACATCaACGATACTAAGTAAATTATCAGAAAATGGGTTCTTTATAAAGTCAGTTCAAGGAAGCAAGGTGAAATGCGGATTTTGCAAAGAGCAGCTTGACACCAAGGAAGACCTAATTGTTCACATGCTCGACCACAGTGATGTTACAGTTATGTGCTGTAGTGAGTgcaagaaaatgtatttaaagaAGAAATTTTTTCTGTCACATTTATGTGACAACGCAAAATCCAAATCTGAAACTAATGCTTCTACTGTTCAAGTGTGCAGCGTTTGCAGCGCTGTGTTACTCACGGAGGCTGACCTGATAGTTCATAATGATTCCGATCATCCGGAATTGTCGTTACGATGCAACCACTGCGCGAAGGTGTTCGCTTCCGTGAAGACAGCCGCTCGCCATAGGACCGCGTGCAAAGATATTGACAGGACGCACAGATGTTCAACCTGCGGTCTCAAGTTTGCCTACGAAATATCCCTCAATAAGCACATACTGAGATACCACCAGGGAGAGAAGGTTTCTGTTGCGCATAAGGGAAAACCCAAAACTACTGAGAACGTTCAATATCAATGTGACACCTGTAATAAGTTTTTCCAAAGGAAAGAGGCACTGGCTAAGCACGCTAAATTGCACATGCCGAATCAAAAGCTCTATGAATGTGATATATGCCAAAGGAAATTCAACAGAAGTGACAACTTGCGAACGCATAAGCGCATACACGACGCAGACCGGCCGAAGCCGCCCTCAAACAACCACCTATGCCTGTACTGCGGCAGGGGTTTCTCCAACTCGTCGAACCTTATCGTGCACATGCGACGGCATACTGGCGAGAAGCCGTACAAATGTGACTTTTGTGAGAAAGGTTTCCCCAGGTCTTCCGATCTCATGGTTCACAGGCGATCGCATACTGGCGAAAAGCCCTGTGTTTGTCGTCTTTGTGGCAAAGCGTTTTCTCGCAGCAACAAGCTCTCCCGCCACATGCGCGTGCACACCGGCCAGCGGCCCTACAAGTGCACCTACTGCGACAAGGCGTTCTCGCAGAGCAACGACCTGACGCTGCACGTGCGCCGGCACACCGGCGACCGCCCCTACATATGCGGCGTGTGCGGGGACAGGTTCATACAGggCACAGCTTTGCAGAATCATCGCCGGGCTCATGGCCACTTCAACACCCCCGACCCGCCGGTCCTAGCCAGCCAAGTGGAGGCCATCACGTACGCAGTCTCCAACATAGTTCACCACGACGACTCGCATTTATCCAACACTATTGCATCTATCTAG
Protein Sequence: MASTNQKIEIKIEKLCRTCLSKDNELNSLFDVNIGEVSLEFIVTSITGLKIRKGDGLPTTICCDCKDKAEKAFEFKNRSQEAYNFLKGFYKDNKSILFDYEDSTTQKSIDLKTEDSETFSDREDFSDVDYSLPLKNGPPDINILPMEIKVKVKHESSNREFNECKKCCLVFETRAKYQEHKKQKCVKVEYEDSSGAHCPICGTSYDGAKSLSNHMWEFHADVMGPKKRGRPKKAMTSTILSKLSENGFFIKSVQGSKVKCGFCKEQLDTKEDLIVHMLDHSDVTVMCCSECKKMYLKKKFFLSHLCDNAKSKSETNASTVQVCSVCSAVLLTEADLIVHNDSDHPELSLRCNHCAKVFASVKTAARHRTACKDIDRTHRCSTCGLKFAYEISLNKHILRYHQGEKVSVAHKGKPKTTENVQYQCDTCNKFFQRKEALAKHAKLHMPNQKLYECDICQRKFNRSDNLRTHKRIHDADRPKPPSNNHLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCEKGFPRSSDLMVHRRSHTGEKPCVCRLCGKAFSRSNKLSRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHVRRHTGDRPYICGVCGDRFIQGTALQNHRRAHGHFNTPDPPVLASQVEAITYAVSNIVHHDDSHLSNTIASI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00811280;
90% Identity: -
80% Identity: -