Prec035673.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720263.1:9626025-9634466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.3e-06 0.00098 20.6 2.4 1 23 11 33 11 33 0.98 2 14 9.2e-05 0.0097 17.4 2.8 1 23 38 60 38 60 0.98 3 14 0.00027 0.028 16.0 1.8 1 23 69 91 69 91 0.97 4 14 1.9e-05 0.002 19.6 0.6 1 23 97 120 97 120 0.97 5 14 4.5e-05 0.0047 18.4 3.5 1 23 126 149 126 149 0.95 6 14 0.39 41 6.0 0.3 1 13 157 169 157 170 0.86 7 14 2e-05 0.0021 19.5 2.4 1 23 170 193 170 193 0.95 8 14 0.39 41 6.0 0.3 1 13 201 213 201 214 0.86 9 14 2e-05 0.0021 19.5 2.4 1 23 214 237 214 237 0.95 10 14 0.39 41 6.0 0.3 1 13 245 257 245 258 0.86 11 14 2e-05 0.0021 19.5 2.4 1 23 258 281 258 281 0.95 12 14 0.39 41 6.0 0.3 1 13 289 301 289 302 0.86 13 14 2e-05 0.0021 19.5 2.4 1 23 302 325 302 325 0.95 14 14 4.4e-05 0.0047 18.4 2.3 1 23 333 356 333 356 0.96
Sequence Information
- Coding Sequence
- ATGTGGTTTAAGGATCGCGAGACGCAGAAGTTCCAGTGCCCCGAGTGCCCGAAAAAGTACAAGTTCTCACACTCGCTGTACAAACACATCGACGTGCATCTGGAGAAGAAACACCAGTGCAGCATCTGCGACAAGATGTTCGGGTCGGAggcgcagcgcgcgcgccacATGCACACGCacgcgcgcgcggcgcgcggcgcgcagCACCACTGCGCCTACTGCGGGAAGGGGTACTACGACGCGTTCACGCTGCAGATCCACGAACGGATCCACACCAACGAGCGCCCCTTCATCTGTGGGATTTGCAATTCTGCATTCCAGACCAATTCCAGCCTCAAGCGACACACGCGCGTCTCCCACAACAGCGACTCTGAGCACGTCTGTGACACCTGCCACCGCTCCTTCACCACGGAGCGCTCGCTGACGCGCCACGCCCTGCGCGCGCACTCGCAGCCGGAGCAGTTCCACTACCCCTGCAAGCTGTGCGACAAGAGCAGCCCCTCACAGCACGTCTGTGACACCTGCCACCGCTCCTTCACCACGGAGCGCTCGCTGACGCGCCACGCCCTGCGCGCGCACTCGCAGCCGGAGCAGTTCCACTACCCCTGCAAGCTGTGCGACAAGAGCAGCCCCTCACAGCACGTCTGTGACACCTGCCACCGCTCCTTCACCACGGAGCGCTCGCTGACGCGCCACGCCCTGCGCGCGCACTCGCAGCCGGAGCAGTTCCACTACCCCTGCAAGCTGTGCGACAAGAGCAGCCCCTCACAGCACGTCTGTGACACCTGCCACCGCTCCTTCACCACGGAGCGCTCGCTGACGCGCCACGCCCTGCGCGCGCACTCGCAGCCGGAGCAGTTCCACTACCCCTGCAAGCTGTGCGACAAGAGCAGCCCCTCACAGCACGTCTGTGACACCTGCCACCGCTCCTTCACCACGGAGCGCTCGCTGACGCGCCACGCCCTGCGCGCGCACTCGCAGCCGGAGCAGTTCCACTACCCCTGCAAGCTGTGCGACAAGAGATACTTCAAGTCCAAAGACCTGCGCAATCACATGTACAAGATCCACGCGCGAAGGATGAAAGACCCGCCGAGCGAGACGGACTGA
- Protein Sequence
- MWFKDRETQKFQCPECPKKYKFSHSLYKHIDVHLEKKHQCSICDKMFGSEAQRARHMHTHARAARGAQHHCAYCGKGYYDAFTLQIHERIHTNERPFICGICNSAFQTNSSLKRHTRVSHNSDSEHVCDTCHRSFTTERSLTRHALRAHSQPEQFHYPCKLCDKSSPSQHVCDTCHRSFTTERSLTRHALRAHSQPEQFHYPCKLCDKSSPSQHVCDTCHRSFTTERSLTRHALRAHSQPEQFHYPCKLCDKSSPSQHVCDTCHRSFTTERSLTRHALRAHSQPEQFHYPCKLCDKSSPSQHVCDTCHRSFTTERSLTRHALRAHSQPEQFHYPCKLCDKRYFKSKDLRNHMYKIHARRMKDPPSETD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -