Prec034453.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720262.1:4112722-4124040[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.077 8.1 8.2 3.3 3 23 280 300 279 300 0.97 2 17 0.00013 0.014 16.9 0.6 1 23 306 329 306 329 0.95 3 17 0.0012 0.12 14.0 4.1 1 23 331 353 331 353 0.99 4 17 0.11 12 7.7 1.4 1 23 358 381 358 381 0.93 5 17 0.1 11 7.8 0.7 1 23 386 409 386 409 0.95 6 17 0.0014 0.15 13.7 7.8 1 23 415 437 415 437 0.97 7 17 0.038 4 9.2 3.8 1 19 443 461 443 465 0.86 8 17 0.00042 0.044 15.4 2.5 1 23 471 493 471 493 0.95 9 17 3.5e-06 0.00037 21.9 1.1 1 23 498 520 498 520 0.98 10 17 0.029 3.1 9.6 2.1 1 23 526 548 526 548 0.97 11 17 0.00014 0.014 16.9 0.2 1 23 554 576 554 576 0.96 12 17 3.8e-05 0.004 18.6 0.6 1 23 582 604 582 604 0.97 13 17 0.022 2.3 9.9 1.9 1 23 609 631 609 631 0.98 14 17 1.2e-06 0.00013 23.3 4.2 1 23 637 659 637 659 0.98 15 17 0.00083 0.088 14.4 2.6 1 23 665 688 665 688 0.92 16 17 0.0003 0.031 15.8 1.8 1 23 694 716 694 716 0.98 17 17 1.6e-05 0.0017 19.8 1.0 1 23 722 745 722 745 0.97
Sequence Information
- Coding Sequence
- atgcgggatgtcagtgcagatctgCTATTCACAGGGGATGGCAGGCCAGATTCGATATGCCATGTGTGCCAGTGGCAGTTAGGAAGATTCGCTGCATTTTGTGACAAAAGTGAAAAGTCTGGTGACATTCTGACTGAAGTATATCGGAATGGGATCGAGATAACCCCTGAGACAGTATCAGTCCTGAACAAAGCGATACAGTCCAGTCACTGTGTGGTGTCTCTCGGAGCTACCTCGTACACTGCCAACAGTGTAGTGAAGAAAGAAACTTCTGAGCCGGATGATGGAACAGAGCTCactattgaatataaaaatccTGTGATCAAATTCGAGGCAGTTTTATGCAGAGTTTGTCTAGCGGTGGATCTAAGGACTTACACCTTGAAACATACGTCGCTTCAAGatgtttacgaaaaacttaCGAGCACAAAGCTTGGAGATGACGACGGGAGGCCCGGAACGGTGTGCTACTTGTGCGCCGCTCAGCTGCACAGTGCACGGAAACTCTGCAACAAGGCTAAGAAATCGGAGAACGTTCTGTCAGAACTCATCCACAATGGAGTTCAGCTGACGCAGGATATAGTGTCGATGCTCAACCGCGGAACCAAGCCGAGCTATACGCGGTCCACGGTGGAGGTGCTGTCTTACGTGCCGGGCGAGCTCGGCGACGTGCCTGTGAAGGAGGAGTTGGTGCAGATGGAAGAGGATGCGCTATTAGGAACAGATTCCTACGAAATCAAGATTGAAACATCACTAGAAAACATGAAGATGGAACCGATTGACTACTCAGAACTGCCGGAACACAATACGGATAAGATTGCTACTCATCAGCGGATATGCGACACTTGCAAATTCAGATGCAGCACCGACGCCGGCCTAAAGAAGCATTTGAGGTTCCACAACCTGAGTCGGAGACATGTCTGCGGTATATGCACCTACCGGTTCGCTAAGCAGAGCCAACTCGCCCAACACATCAGCAATGTCCATAGATACAGGTGTGCCAAATGCAAAAGAACATTCCAGAATTCCATCTCTTACAAAAAGCACAAGCTAACTCACACGAGCAAACGGTTCCATTGCGAAAAGTGCGCCAGCGCTTTCGATACAGCGAACAGTTTGAGAAGCCATTACTACAACGTACACAAAGGAGAAAGACATCCGTGTAGTCGCTGTAAGTTCACATCGACGAGCTACGCATGGCTTCTGGATCATATCATCAGAATACACACGCGGAGCAAACATTACATATGCGACATTTGCCACAGAACCTGCTCAACGAAGAAGACCCTGAAACATCATCTGTCTTTACATTTCATCACGAAGCGGCACGAATGCGGGATATGCTTTAAGACGTTTAGCACTCAGCAGAATTTGTTGTGCCATAATACACTTCACACAGGAGACAGGCCTTTCAAATGCCAGATATGCAACAAATCGTACAGCGAGAAGGCAAGACTAACCCGACACTCGTTCTCGCACAATGAAAAGGAGTTCTCTTGCACAGTTTGCCAAAAGGGCTTCTTCCGCCGAGATCTACTGAGGCGGCACATGATCGTACACACGGGCGAAAAGATCCACGAATGCGAGCGTTGCGATCTGAAATTCTTAACGAGCATATACATGAGGAAGCACATGGCAACCCACACGGAGGAAAGACCGTACGCGTGCGGCGTCTGCAGCAAAACGTTCAAAACCGCCGCCGGTTTGAAGCTGCATACATCACTGCACGGGAAACTAAAGACATACATATGCGACTATTGCAAGAAAGCGTTTACCGGGAAGAACTATCTAGCGATGCATATGATATATCACAAACAGAAAAGATACAGTTGCGATATCTGTGACCAGCTGTTTCACAGCAAGCAAATACTGGAACTACACAGGAGAACTCACACGGGTGAGAAGCCGTTTGAATGCAACGATTGCGGGCACACTTTCACGCAGAAGTGCGCTCTAAAACGTCACATTAGAGCTCATAATAAGGATAAACCGTTCAAATGTCGTAAATGCAACAAGTCATTCGCGGAGAAGTTATCGCTACGCAGACACAACTTGTACCTACACGATCGAATCGACAGATTCATCTGCGACCTGTGTAACTGTGTGTTTATCGAGAAAGAGAAGCTGAAACTCCACATCAGAAAGCATACTGGAGAGAAGCCGTTTGCATGTGAGCTGTGCGACAAGACTTATGTCGAGAGACGTGACTTACTCCACCATATGAGAACGGTTCATGATAGACTTGAATGTTTTAACTAG
- Protein Sequence
- MRDVSADLLFTGDGRPDSICHVCQWQLGRFAAFCDKSEKSGDILTEVYRNGIEITPETVSVLNKAIQSSHCVVSLGATSYTANSVVKKETSEPDDGTELTIEYKNPVIKFEAVLCRVCLAVDLRTYTLKHTSLQDVYEKLTSTKLGDDDGRPGTVCYLCAAQLHSARKLCNKAKKSENVLSELIHNGVQLTQDIVSMLNRGTKPSYTRSTVEVLSYVPGELGDVPVKEELVQMEEDALLGTDSYEIKIETSLENMKMEPIDYSELPEHNTDKIATHQRICDTCKFRCSTDAGLKKHLRFHNLSRRHVCGICTYRFAKQSQLAQHISNVHRYRCAKCKRTFQNSISYKKHKLTHTSKRFHCEKCASAFDTANSLRSHYYNVHKGERHPCSRCKFTSTSYAWLLDHIIRIHTRSKHYICDICHRTCSTKKTLKHHLSLHFITKRHECGICFKTFSTQQNLLCHNTLHTGDRPFKCQICNKSYSEKARLTRHSFSHNEKEFSCTVCQKGFFRRDLLRRHMIVHTGEKIHECERCDLKFLTSIYMRKHMATHTEERPYACGVCSKTFKTAAGLKLHTSLHGKLKTYICDYCKKAFTGKNYLAMHMIYHKQKRYSCDICDQLFHSKQILELHRRTHTGEKPFECNDCGHTFTQKCALKRHIRAHNKDKPFKCRKCNKSFAEKLSLRRHNLYLHDRIDRFICDLCNCVFIEKEKLKLHIRKHTGEKPFACELCDKTYVERRDLLHHMRTVHDRLECFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -