Basic Information

Insect: Pasiphila rectangulata
Gene Symbol: -
Assembly: GCA_963082625.1
Location: OY720262.1:10305729-10313721[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.39 41 6.0 3.6 1 19 189 206 189 209 0.80

2 11 1.2e-06 0.00013 23.4 1.3 2 23 223 244 222 244 0.97

3 11 0.0047 0.5 12.0 0.4 1 23 250 273 250 273 0.97

4 11 5e-06 0.00052 21.4 0.4 1 23 279 302 279 302 0.97

5 11 1.2e-05 0.0013 20.2 0.3 1 23 307 329 307 329 0.98

6 11 5.7e-07 6e-05 24.4 2.5 1 23 335 357 335 357 0.97

7 11 4.3e-05 0.0045 18.5 2.4 1 23 368 390 368 390 0.98

8 11 0.00041 0.044 15.4 0.8 1 23 395 417 395 417 0.98

9 11 1.8e-07 1.9e-05 26.0 1.8 1 23 423 445 423 445 0.97

10 11 2.8e-05 0.003 19.0 1.4 1 23 451 473 451 473 0.98

11 11 1.7e-07 1.8e-05 26.0 0.7 1 23 479 501 479 501 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.39	41	6.0	3.6	1	19	189	206	189	209	0.80
2	11	1.2e-06	0.00013	23.4	1.3	2	23	223	244	222	244	0.97
3	11	0.0047	0.5	12.0	0.4	1	23	250	273	250	273	0.97
4	11	5e-06	0.00052	21.4	0.4	1	23	279	302	279	302	0.97
5	11	1.2e-05	0.0013	20.2	0.3	1	23	307	329	307	329	0.98
6	11	5.7e-07	6e-05	24.4	2.5	1	23	335	357	335	357	0.97
7	11	4.3e-05	0.0045	18.5	2.4	1	23	368	390	368	390	0.98
8	11	0.00041	0.044	15.4	0.8	1	23	395	417	395	417	0.98
9	11	1.8e-07	1.9e-05	26.0	1.8	1	23	423	445	423	445	0.97
10	11	2.8e-05	0.003	19.0	1.4	1	23	451	473	451	473	0.98
11	11	1.7e-07	1.8e-05	26.0	0.7	1	23	479	501	479	501	0.98

Sequence Information

Coding Sequence: ATGATGGACCCCAGGGTGGGCTATACCTATATGAGGCACTGTTGCAAACATCATTTGTCCCCCTACACTCCTGATGCACCCTTCGGTTTCGTAGACAGCATGTGCTACATTTGCTGCTGGCAGCTGCGGCGCTGCCAGAGGTTCGCTCGCATGGCGCACAGGTCCAGTAGTGTACTCCTGGATATAAGCAGTCGGGGCCTAGAAGCTTCGCAAGAGACTCTCACATCATTGAACATCAAAACTATTAATACCTTGACCGTACACACTAAAACGGAGTCTTTAACCGACTTGGATACTGATGATATTGACAAACACATCGCTGTCAAGGAGGAAACCTCTGTGGAGAGGGACAACGAAATAACTACTCAAAATGTAGTAGAAACCCCGGAAGAGGCGCTCAATGATATAGCCAAAACGGAAGACACATTCGTAGATGACGATAACGACGCAGACACAAAACCCCCTATAATAGATGAAATCTCAAATCCAAACAGCTATGTCTACTTCGAAGTGAAGAACAATAACGTGCCAAAGCGGAAACTGGTCAGAAAAATCCCCAAAAAGCACACATGCAAGAAATGCAAGGTGTCCTTCAGTAAATCGGCGTTCCTCAGTCACAACTGCGCCAAAATCGTtagacaaaacaaaaataaggcaCATAACCTAACCTGCGACCTCTGCAACAAAACGTTCAGCGACAAATACGTGCTCAAAAAGCATCTGAGGATACACTCGAACGAGAAACCTTACGTCTGCGACAAATGCAACAGGGCCTTTCTCCTCCCGACCTATCTGAAGGACCACATACTCCGCACGCACGCGGAGGTGAGAGAATACGCCTGCACGGAATGCCCTAAGACGTTCGCAGTCAAGAACACGCTGTTGAAGCACATCAAGCGTCTGCACAGCGGCAAGACGTACACGTGCGACCGATGCGCCCGCGCATTCAACAACAACAGCGACTTGAAGTCGCATATGGTGGTGCACACGAGCGAGCGGCCGCACGTCTGCTCGACTTGCGGCAAAGCGTTCAAGCGGAAGAACCAGCTGAACGAACATATCAAGTCGCATAATGGACAGAAGGCGGCTGCTAGTAAAGTGTACGCCTGCTCGCACTGCGACAAGAAGTATTCCCTGAGACCCAGCCTGTTCAATCACATGAAGATTCACACCGGGATGCTTTACACTTGCGACCGGTGCGCGGTCGCCTGCAGGGACCGGAGCACGCTCAAGGTCCACATGCTGATCCACTCCGACGAGAGGCCCCACGTGTGTCCCACGTGTGGGAAGGGCTTCAAGCGGAAGAGCCAGCTGAACGAACACACCAAGGTCCACACGGGGGAGCGCCCGTACTCCTGTGACGTCTGCGATAAGACTTTCACTCAGAGGGGGTCTCTTAATTTCCATAAGAGGGTGCACACGGGCCAGCGCCCTTACATCTGCGAGGTCTGCGGCCGCACCTTCGACAGCAAGTACAACATGCAGAAACATCTCCGAATCCACACCGGCGAGCGGCCCTACGCCTGCGAGGCGTGCCCACAGAGGTAG
Protein Sequence: MMDPRVGYTYMRHCCKHHLSPYTPDAPFGFVDSMCYICCWQLRRCQRFARMAHRSSSVLLDISSRGLEASQETLTSLNIKTINTLTVHTKTESLTDLDTDDIDKHIAVKEETSVERDNEITTQNVVETPEEALNDIAKTEDTFVDDDNDADTKPPIIDEISNPNSYVYFEVKNNNVPKRKLVRKIPKKHTCKKCKVSFSKSAFLSHNCAKIVRQNKNKAHNLTCDLCNKTFSDKYVLKKHLRIHSNEKPYVCDKCNRAFLLPTYLKDHILRTHAEVREYACTECPKTFAVKNTLLKHIKRLHSGKTYTCDRCARAFNNNSDLKSHMVVHTSERPHVCSTCGKAFKRKNQLNEHIKSHNGQKAAASKVYACSHCDKKYSLRPSLFNHMKIHTGMLYTCDRCAVACRDRSTLKVHMLIHSDERPHVCPTCGKGFKRKSQLNEHTKVHTGERPYSCDVCDKTFTQRGSLNFHKRVHTGQRPYICEVCGRTFDSKYNMQKHLRIHTGERPYACEACPQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -