Prec017411.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720246.1:17195034-17217057[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.024 2.6 9.8 0.8 1 23 27 49 27 49 0.97 2 15 0.0062 0.66 11.7 1.8 3 23 57 77 55 77 0.94 3 15 3.5e-06 0.00038 21.9 2.9 1 23 83 105 83 105 0.96 4 15 1.2e-05 0.0012 20.3 3.8 2 23 112 133 112 133 0.97 5 15 2.2e-06 0.00023 22.5 2.9 1 23 189 211 189 211 0.98 6 15 0.00023 0.024 16.2 0.2 3 23 219 239 218 239 0.97 7 15 8.6e-05 0.0091 17.5 8.9 1 23 295 317 295 317 0.98 8 15 8.6e-05 0.0091 17.5 8.9 1 23 336 358 336 358 0.98 9 15 8.6e-05 0.0091 17.5 8.9 1 23 377 399 377 399 0.98 10 15 8.6e-05 0.0091 17.5 8.9 1 23 418 440 418 440 0.98 11 15 8.6e-05 0.0091 17.5 8.9 1 23 459 481 459 481 0.98 12 15 8.6e-05 0.0091 17.5 8.9 1 23 500 522 500 522 0.98 13 15 1.2 1.2e+02 4.5 0.6 2 20 530 548 529 550 0.88 14 15 8.8e-05 0.0093 17.5 5.0 1 23 610 632 610 632 0.97 15 15 1.5e-06 0.00016 23.0 3.3 1 23 638 660 638 660 0.97
Sequence Information
- Coding Sequence
- ATGGAATTCCTTATGAAGAGAAGTCTCCTAGCCAAGAACAAGTTAGCCATCATTGTCAACCAAGGCAGCGAGACTCAGTACTGCTGTGTACAGTGTCCTGTCCGGAGCACCCTTAAGGAGGAGCTTGAGAAGCATCTTCTAATGCATAACAAGGAGTACAAGCATTTGTGCGGGATTTGTGGCACTGGATTAAAACGTAAAGAACACCTAGACCGACACACATTGGAGCATCAGCAAGTGAGACCTCACATCTGCAGCATCTGCAACAAAGCCTTTAAGAGGAAAGAGCATCTCAACGTCCATCTCAGCATACACAGCGGAGACAAGTCCGAGGTCTGCATGCTCTGCCAGAAATCATTCTACCGCAAGGACCACCTTCAGAAGCACTTGCAGACGCACGGCAAGATCCTCATGGAGCAAGGCATGCAGATACTCGGAGACACGGAGCTGATGAACCTGAAGACGGAAATCATGGACGAGGACTATAATAGCTCCCGATCTGAGGACAGCGAAACGCCTGACCCTCTGTACATAGACACGTCAGTCAAGAACGACGTGCGTCCTTACGCCTGTTCGCTCTGTCCAAAGACGTACAAGCGGAAGGATCATCTGAAGCTGCATCTTAACACGCACTTCAAGAAGGAAGGCAGGCCGTGCTCCGAGTGCGGGAtggTGTTCCAGAAGGAGGAACAACTGCTGCTGCATATGAACCGACACCTGAACAACTACGTGTATGAAGAGGACGACCAGACGGATCTGCGCGCCATGCTGGCGGAAAACGTCGTCGACCCGTCCACTTTTCTGACAGATAACAGTTTACTCATCGAGCGAGACACAGCGCCGGCGGCCCACCGCGCCAGCGCCGCCGACGGCGACAGGCGCCACGAGTGCGACGTCTGCCACAAGCGGTTCAAGCGGAGGCAGCATCTCAAGGTGCACTACAACACGCACGCCAAGGGCGAGCCGCTGCTACGGTGCATCAAGTGCAATAAAGGTGAGAGGCGCCACGAGTGCGACGTCTGCCACAAGCGGTTCAAGCGGAGGCAGCATCTCAAGGTGCACTACAACACGCACGCCAAGGGCGAGCCGCTGCTACGGTGCATCAAGTGCAATAAAGGTGAGAGGCGCCACGAGTGCGACGTCTGCCACAAGCGGTTCAAGCGGAGGCAGCATCTCAAGGTGCACTACAACACGCACGCCAAGGGCGAGCCGCTGCTACGGTGCATCAAGTGCAATAAAGGTGAGAGGCGCCACGAGTGCGACGTCTGCCACAAGCGGTTCAAGCGGAGGCAGCATCTCAAGGTGCACTACAACACGCACGCCAAGGGCGAGCCGCTGCTACGGTGCATCAAGTGCAATAAAGGTGAGAGGCGCCACGAGTGCGACGTCTGCCACAAGCGGTTCAAGCGGAGGCAGCATCTCAAGGTGCACTACAACACGCACGCCAAGGGCGAGCCGCTGCTACGGTGCATCAAGTGCAATAAAGGTGAGAGGCGCCACGAGTGCGACGTCTGCCACAAGCGGTTCAAGCGGAGGCAGCATCTCAAGGTGCACTACAACACGCACGCCAAGGGCGAGCCGCTGCTACGGTGCATCAAGTGCAATAAAGGATTCAACTCGGATGCCGACCTGGACAACCACCGGTGCGCAGCGGTACAGGCCGTTCAGAACTTGGACATTAAGGTGGCAGCCGTCACTGACAATCGCAAGGAGAACCAGTATCCGGTGCAGGGGATCACTATTCAACCGATGGAGCCGACACAAGAAGAGGACGAGACGCAGTACATAATACAAGACGAGAGCGACATCCCCGTGCCTCAGAAGGTGTTTGTCTGCAAGTGGTGCTCCAAACCCTTCAAGCGCAAGGACCACTACAAGATACATCTGCATATACACACGGGGATCAAGTCCTTCTTCTGCACCGACTGTGGGAAAGGTTTCTACCGCAAGGACCACCTGCAGAAGCATACCCTGGTGCACTCAAACAAGCCCAAAGCCAAGAAGCCGCTGCCCGGGCTCCTGTCCTTAGACATGGTGATGAAGAAGAAAGACGTCAGGGACATCAAGCCGGAAATCACTATTACTGCCCCATCAAGCTCAAAACTCCGGGTGCCACTACAAATCAAGGTTCCCTACCAAGTAGTGATGGCGATGGATAACGGCGAGAAGACAGCGGTCACGTACGACCCGCAGTCGCAGGAGATCTCTTAG
- Protein Sequence
- MEFLMKRSLLAKNKLAIIVNQGSETQYCCVQCPVRSTLKEELEKHLLMHNKEYKHLCGICGTGLKRKEHLDRHTLEHQQVRPHICSICNKAFKRKEHLNVHLSIHSGDKSEVCMLCQKSFYRKDHLQKHLQTHGKILMEQGMQILGDTELMNLKTEIMDEDYNSSRSEDSETPDPLYIDTSVKNDVRPYACSLCPKTYKRKDHLKLHLNTHFKKEGRPCSECGMVFQKEEQLLLHMNRHLNNYVYEEDDQTDLRAMLAENVVDPSTFLTDNSLLIERDTAPAAHRASAADGDRRHECDVCHKRFKRRQHLKVHYNTHAKGEPLLRCIKCNKGERRHECDVCHKRFKRRQHLKVHYNTHAKGEPLLRCIKCNKGERRHECDVCHKRFKRRQHLKVHYNTHAKGEPLLRCIKCNKGERRHECDVCHKRFKRRQHLKVHYNTHAKGEPLLRCIKCNKGERRHECDVCHKRFKRRQHLKVHYNTHAKGEPLLRCIKCNKGERRHECDVCHKRFKRRQHLKVHYNTHAKGEPLLRCIKCNKGFNSDADLDNHRCAAVQAVQNLDIKVAAVTDNRKENQYPVQGITIQPMEPTQEEDETQYIIQDESDIPVPQKVFVCKWCSKPFKRKDHYKIHLHIHTGIKSFFCTDCGKGFYRKDHLQKHTLVHSNKPKAKKPLPGLLSLDMVMKKKDVRDIKPEITITAPSSSKLRVPLQIKVPYQVVMAMDNGEKTAVTYDPQSQEIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -