Prec036175.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720264.1:4540951-4546836[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.1 11 7.9 3.3 1 23 48 71 48 71 0.97 2 31 0.11 11 7.8 0.0 3 23 96 117 94 117 0.95 3 31 0.0011 0.11 14.1 0.8 2 23 140 161 139 161 0.95 4 31 0.025 2.6 9.8 1.4 1 23 165 187 165 187 0.93 5 31 0.0016 0.17 13.6 0.9 1 23 191 214 191 214 0.97 6 31 0.04 4.2 9.1 1.1 1 23 220 243 220 243 0.96 7 31 0.028 3 9.6 0.2 1 13 250 262 250 265 0.86 8 31 0.055 5.8 8.7 0.5 1 23 310 332 310 332 0.94 9 31 0.0043 0.46 12.2 2.9 1 23 401 423 401 423 0.98 10 31 0.25 27 6.6 0.2 1 13 427 439 427 449 0.71 11 31 0.045 4.7 9.0 1.6 2 23 454 476 453 476 0.95 12 31 0.056 5.9 8.7 0.6 2 23 481 503 480 503 0.95 13 31 3.3 3.5e+02 3.1 3.2 1 23 509 532 509 532 0.83 14 31 0.00057 0.06 14.9 1.4 3 23 540 560 538 560 0.98 15 31 0.00034 0.036 15.7 0.5 2 21 567 586 566 587 0.95 16 31 0.063 6.7 8.5 4.0 1 23 629 651 629 651 0.96 17 31 8.5 9e+02 1.8 0.1 3 23 681 702 679 702 0.92 18 31 0.0054 0.57 11.9 0.6 2 23 723 745 722 745 0.94 19 31 0.0016 0.17 13.5 3.2 3 23 752 773 751 773 0.97 20 31 0.09 9.5 8.0 0.8 1 23 778 801 778 801 0.94 21 31 0.21 22 6.9 0.2 2 23 804 826 803 826 0.95 22 31 0.0021 0.22 13.2 0.7 2 22 833 853 832 853 0.93 23 31 0.006 0.63 11.7 0.4 1 23 910 933 910 933 0.92 24 31 1 1.1e+02 4.7 0.1 3 23 962 983 960 983 0.94 25 31 0.044 4.7 9.0 0.2 2 23 1006 1029 1005 1029 0.95 26 31 0.00084 0.089 14.4 0.4 3 20 1036 1053 1034 1057 0.90 27 31 0.09 9.6 8.0 0.6 1 23 1062 1085 1062 1085 0.96 28 31 0.0066 0.7 11.6 0.3 2 23 1091 1113 1091 1113 0.94 29 31 0.00035 0.037 15.6 4.9 1 23 1117 1140 1117 1140 0.97 30 31 5.9e-05 0.0062 18.0 0.4 2 23 1147 1168 1146 1168 0.96 31 31 0.015 1.6 10.5 1.8 1 23 1174 1196 1174 1196 0.97
Sequence Information
- Coding Sequence
- ATGCGTTTTTCCTTTTTAGGTGCAAACGCTCCCGAGCAAGCCTGCCAGTCGAAAATTCAGCGTAACCGTCTCATAAAGATGAACACCATCACTATACTAGAATACTCCACCGTAATCCCATTTAAATTCCAAGGAAAATGCTACTACTGCTTCTATTGCAACACTCAAATAAACTCATTTCATAACCTTAAATCGCACGTAGAGACCGAACACCAGAAAACGCCAAAGAAATCTGTATTTATTAACAAAGGCGCGGTGGTCAAAATCGACGTAGTGTCTATAAATTGTAAGCTTTGCGGCGCCAAATTGGAAAATCTAGACGGGCTTGTGTCCCACTTGAAGATAGCACATGACAAGTTTTTCAACGATGACCTCGATTACGGCGTTATGCCTTACAAGCACCACGCTACTAACTGCGAATGCGCGATCTGCGGTGAAACATTCGGTTACTACATTAAACTTAACCAACATATGAATCAGCATTTCGGTAAACACGTATGCGAAATTTGCGGCAAATCATTCTTGAACACTATAAGATTGAAGACTCATTCGATGTCTCACGGTGCGAGGTATCCCTGTAGCTTTTGCCCTGAGGTGTTTCGTACATATTCAAAGAGAAAGAATCACTACGCCACTGCTCACAACGTATCGAAGGACCATAAGTGTCTGTATTGTTCTGAAATGTTTCCAAACTATGGCGCGAGAACGCTGCATCTACGTTACGCTCATAATGTCGATACTCCTACCTTTGACTGTCCGGTTTGCGGTAAGTCTTTCCGGCTCAATAGTGGCAATGCGGTGCCCGAGCAGTCACAGAAACCCAATACCACACTGTCCGCCACAAAACTGAACCGTTTGAGAAACCGCAACACAGTCACGATCCTACAAAACAGTACGGCTGTACCTTTCAAATGGCACAGACAATTTTACCTCTGCTTCTACTGCAACAAACCTTTAGAAACCTTTATCGAACTCAAAAAACATGTCAGCGAACACAAAACGGTTAACGTCAAATCTGCCGTGCGATTTCGAAGCGCGAACGATAAAGCCAAAATCGATATAGCCTCTTTCGAATGCAAGTTATGCGAACATACTCCCCCAAACGTAGACTCTTTTGTCGAACACTTAAAGGCCGCGCACGATAAACAATTCGAAGACGCTGATATCGCCGTCATTCCGTACAAGCACGAGGTCGATTCTTACGATTGCGGTATCTGCAACGAAAAGTTTCACTACTTCGTCAAACTCAATCAGCATATGAACAAGCATTTCGGTAACCACGTTTGTGAGACTTGCGGGAAATCCTTCCTTAGCGCTGCTAGGCGTAGGCTGCACGCCCTGATCCACGCTAAGGATGTCCAGTGCCAGCATTGCCCTGAAAAATTCCGGTCTATATCAATGAGGAACTACCACGTGAATAAAGTGCACCAGTCTAGCGTGAAATGTAGTTTTTGCCCGGAGCAGTTCGCAAGCTACAAGCAAAGGAAGGTGCATCTAAAGCTGATTCACAATGTGGGCTCGTTGCACGCTTGTCCGGTATGCGGGAGAGAGTTTCACTGCAACAGTAGAATGGAGTATCACCTGAAAGGTGTACATTATAAGGAGAAGCATTTCGGTTGTTCGATGTGCGACCAAAGGTTCTTTTCTAACTGGCAGTTGACGAAGCACACGAAGATACATGAAGCGGGGAGGGGGAACCAGTGTGAGCTCTGTCATGAGACGTTCTCTAAAGCTAGCAGTTTGAAGGAGCATCTGAATGGATGCATTACGAATGTAAAACCGCGAAAAAACAAGGGTACGGAATCGTCGTCCATTCGCCGAAGGAAAAATCTCCAAATTATTTTCAACAATACTTCGATAATACCATTTAAATGGAGAGGGAAGTATCTCTGCTTCTATTGCAGCAAACATTTGTCTGAATACGAGGATTTGAGGAAACATACTAAATCTCATGGAGATTGTTCGATTCTAGACCATTCTTTGAAGGTTTTGAAAGGTGGCACTAATATGGAAATCAAAATCGACGTATCAGACATTAATTGTGAGTTTTGCGGTGTAACACTGCAATCTTTCGAAAGAGTGATAGATCATTTAAAGACTGAACATGAAATAGATTACGATAGAGATGTAGACATGGCTATAGAGCAGTATAAATTAGCCAACCTCAGCTGCATGACTTGTGATGAGAAATTCACATATTTCGGATACTTAGTCTCGCATATGAACAATCAGCACCCAAAAAACTGCATTCTCTGCGACAAATGCAATCAAAAGTTCAATAAGAAAAGAGATCTGTTCTCTCATATGAAGAACTATCACAGAGAAGGAGGCTACCAATGCGATGCTTGCCCTCAATCCTTCAACTCTCTAAATATCTTAAGAAAGCATAGGACTAATAGACATTTGACCAAATGTAACATATGTCAGCTGAAGCTACCATCAGCTgcgttaaaacaaaaacatatgGACGTTGAACATCCAGATGACGGGTCATTGCAGTGCGAAAATTGCGGTAGAGAATTCCACACTAAAACTGGCCTAAGAATGCACGCGAGAAAATGCAAGATCGACTTCGAGTTCGCTATTAAAAAGGAAGATTTTACGATGGATTTAGATCAGAACTATGAGAATCCTCCTAAAAGGCCAAGTGTGAAACAAATTCGAGAGAATATTGTCATCGTCATCAACATGTCAACAGCAATACCTTTTAACTTCTACAAGAACAAATTCAACTGTTTCTACTGCTCCAAAGACTTCCCCGACTCGGATTCTATGAGAGAACACACTGTTGTTGAACATCCTGTCTGTAACAtcaaagaaaaatgtataaagaAGTGCAGGGAAACGGTGACTTGCGTTAAAATTGACGTGTCTACCCTAGCCTGCAAGCTCTGCTTCGAATCACTGGCAGATTTTGATAAACTCCTTGAACATTTGATCGTAAAACACAACGCTAACTACGACAAGACAATAACAACGTGCCTTCAACCTTACAGACTCGTTAAAGACAATATGGTCTGCCCTAACTGTCCTACCGAAGTGTTCCGTTTCTTCGGTACACTTCTGAAACACATGAACAAAGAACACACGAACAATAACATTATATGTGTGTACTGCGGAGAAACTTTTCGACGCGATCAAAACCTAAGAGTTCATATATGGAGACATCACCGCGACGGTACATTCAAATGCACTATCTGCGATACTGACTGCGGTATACCCTCGCGGCTATACATGCACATGGCCAAAGCTCACGGCGTCAAAGCTGCAAAATGTCCGAAATGCGCTGAAACGTTTGCGACTCAGTATCTGCGCCAGAAGCATTTGATTGAAGCGCACAATTCCGGGCACAAATGCTCTTTCTGCGGCAAACTGTTCACTAGAAACTCATTTATGCGCGATCACATACGACGCACGCATTTGAAGGAGAAGAATGTTGAGTGCAATATATGCGGTATGAAGTTCTTTAACAATATCCTGCTGAGGAGGCATATGGTAAAACATAGCGGGGAGAAAAATTTCCATTGCGATGTTTGTGGTGAAAGATTCTTCTGGCGAAAGAGTCTTAGAACTCATATTGCGAGgcataacaaacaacttcaaccACTAATGTAG
- Protein Sequence
- MRFSFLGANAPEQACQSKIQRNRLIKMNTITILEYSTVIPFKFQGKCYYCFYCNTQINSFHNLKSHVETEHQKTPKKSVFINKGAVVKIDVVSINCKLCGAKLENLDGLVSHLKIAHDKFFNDDLDYGVMPYKHHATNCECAICGETFGYYIKLNQHMNQHFGKHVCEICGKSFLNTIRLKTHSMSHGARYPCSFCPEVFRTYSKRKNHYATAHNVSKDHKCLYCSEMFPNYGARTLHLRYAHNVDTPTFDCPVCGKSFRLNSGNAVPEQSQKPNTTLSATKLNRLRNRNTVTILQNSTAVPFKWHRQFYLCFYCNKPLETFIELKKHVSEHKTVNVKSAVRFRSANDKAKIDIASFECKLCEHTPPNVDSFVEHLKAAHDKQFEDADIAVIPYKHEVDSYDCGICNEKFHYFVKLNQHMNKHFGNHVCETCGKSFLSAARRRLHALIHAKDVQCQHCPEKFRSISMRNYHVNKVHQSSVKCSFCPEQFASYKQRKVHLKLIHNVGSLHACPVCGREFHCNSRMEYHLKGVHYKEKHFGCSMCDQRFFSNWQLTKHTKIHEAGRGNQCELCHETFSKASSLKEHLNGCITNVKPRKNKGTESSSIRRRKNLQIIFNNTSIIPFKWRGKYLCFYCSKHLSEYEDLRKHTKSHGDCSILDHSLKVLKGGTNMEIKIDVSDINCEFCGVTLQSFERVIDHLKTEHEIDYDRDVDMAIEQYKLANLSCMTCDEKFTYFGYLVSHMNNQHPKNCILCDKCNQKFNKKRDLFSHMKNYHREGGYQCDACPQSFNSLNILRKHRTNRHLTKCNICQLKLPSAALKQKHMDVEHPDDGSLQCENCGREFHTKTGLRMHARKCKIDFEFAIKKEDFTMDLDQNYENPPKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVVEHPVCNIKEKCIKKCRETVTCVKIDVSTLACKLCFESLADFDKLLEHLIVKHNANYDKTITTCLQPYRLVKDNMVCPNCPTEVFRFFGTLLKHMNKEHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGTFKCTICDTDCGIPSRLYMHMAKAHGVKAAKCPKCAETFATQYLRQKHLIEAHNSGHKCSFCGKLFTRNSFMRDHIRRTHLKEKNVECNICGMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHIARHNKQLQPLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00701297;
- 90% Identity
- -
- 80% Identity
- -