Basic Information

Insect: Pasiphila rectangulata
Gene Symbol: -
Assembly: GCA_963082625.1
Location: OY720262.1:10291011-10294065[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0005 0.053 15.1 1.0 1 23 158 180 158 180 0.97

2 16 0.00023 0.025 16.2 3.2 1 23 185 207 185 207 0.98

3 16 3.1e-05 0.0033 18.9 3.2 1 23 213 235 213 235 0.97

4 16 1.6e-05 0.0017 19.8 0.6 1 23 245 267 245 267 0.98

5 16 1.3e-05 0.0013 20.1 2.3 2 23 273 294 272 294 0.97

6 16 3.8e-05 0.0041 18.6 0.2 2 23 299 322 298 322 0.92

7 16 0.004 0.43 12.3 2.4 1 23 328 350 328 350 0.97

8 16 9.8e-06 0.001 20.5 0.9 1 23 356 378 356 378 0.98

9 16 4e-05 0.0043 18.6 2.4 1 23 383 405 383 405 0.97

10 16 0.00016 0.017 16.7 0.3 1 23 411 433 411 433 0.98

11 16 3e-06 0.00032 22.1 1.9 1 23 438 460 438 460 0.98

12 16 4.2e-06 0.00044 21.7 0.4 1 23 466 490 466 490 0.96

13 16 4.9e-06 0.00052 21.4 1.3 1 23 496 518 496 518 0.97

14 16 1.4e-07 1.5e-05 26.3 1.6 1 23 524 546 524 546 0.98

15 16 0.00022 0.023 16.3 0.2 1 23 552 574 552 574 0.97

16 16 0.00084 0.088 14.4 4.2 1 23 580 602 580 602 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0005	0.053	15.1	1.0	1	23	158	180	158	180	0.97
2	16	0.00023	0.025	16.2	3.2	1	23	185	207	185	207	0.98
3	16	3.1e-05	0.0033	18.9	3.2	1	23	213	235	213	235	0.97
4	16	1.6e-05	0.0017	19.8	0.6	1	23	245	267	245	267	0.98
5	16	1.3e-05	0.0013	20.1	2.3	2	23	273	294	272	294	0.97
6	16	3.8e-05	0.0041	18.6	0.2	2	23	299	322	298	322	0.92
7	16	0.004	0.43	12.3	2.4	1	23	328	350	328	350	0.97
8	16	9.8e-06	0.001	20.5	0.9	1	23	356	378	356	378	0.98
9	16	4e-05	0.0043	18.6	2.4	1	23	383	405	383	405	0.97
10	16	0.00016	0.017	16.7	0.3	1	23	411	433	411	433	0.98
11	16	3e-06	0.00032	22.1	1.9	1	23	438	460	438	460	0.98
12	16	4.2e-06	0.00044	21.7	0.4	1	23	466	490	466	490	0.96
13	16	4.9e-06	0.00052	21.4	1.3	1	23	496	518	496	518	0.97
14	16	1.4e-07	1.5e-05	26.3	1.6	1	23	524	546	524	546	0.98
15	16	0.00022	0.023	16.3	0.2	1	23	552	574	552	574	0.97
16	16	0.00084	0.088	14.4	4.2	1	23	580	602	580	602	0.97

Sequence Information

Coding Sequence: ATGAAAAACTCCGAAAACACCGAACTCCTTATTATTCTTGAAAGACTTACAAATGTCAAGCATGATGCCTTCGGCGGAGCGAGGATGTGCTACCTTTGCTACTGGCGACTGCAGCGATGCCTCAAGTTTGCAGAGATGGCGCAGAACTCCAACCAAATTCTTAAAAGCATTCACAAAAGAGGATTTGAGGCCACACGTGAAACATTGGAGATGATGAACGTCAAACCCTTCGAAAGCTTAGCCGTGAGTTCCGCCCAATCTATGTTCACGATAACAATGGAAGAGGCGTGCACCCCTTATACAACAGTCAAGCAAGAACCACTAGCTTTAAAGCAGGAAGAAGTCCACGACGCCATTTTCGATATCGCATTTGTGGATGAGGATGAAGAAATAGTCAAACCACTAAAACTAGAAATTGATATAGCATCTACTAGTGCAGAAACCAAACCAATCAATGGTCCCGAAGGAGCATTTTTTTGCGAAAAATGTAGTGAACCGTTCATTATCAAGTATGATTACGAAAGACATTTGAAAACTCATTTAGAAAAGATGTATCATTGTGATAAGTGCCCTAAACAGTTCAAACTAAAACGCGGTTTATTGAAACATTTAAAAGTCCACGGAAACGACAAGGTGTACCCTTGCACTCAatgtaataaacaatttgaacaTAGGTTCgcgttaaaaaaacacatgatcAACCACACTGAAGCAGGTGAGCCGCCAGAAGAATTTGTCTGCGATATATGCAACAGAACTGTAAATAACctatacaatttacaaaagcaTAAAGCGACACACACAGAAGACTCCTTAATTTGCAAAACTTGCGgtaaaaactatttaaacaaAAGCACATTGAAGAAACATATGCGGACACATGATTTGCAGCACGCCTGCGACGAGCCAGGCTGCGGGAAAGTCTTTGCTCAAAGAAATCAGCTCACCATCCACTCCCGAGTCCACACCGGGGAAAGACCATTCGCCTGCAACAAATGTAACAGATCCTACACGCTCCTAGACTCCCTGAAGTTCCATCAGAAAACTCACACGGGCGAGAAGTCCTACAAATGCAGTTTATGCGACAAAGCATTCTACAAAAAGATAAATCTAGGGAACCACATGAAAGCACACGAAAGGGAAACGTTCGACTGTTTGCATTGCAACAAAACCTTTAACCTCCCAGTGCATTTGGAAACGCATATGCTCGTTCACACTCCCGTGAAGCCACACACGTGTGGGCTCTGCAACTCCGCTTTCGCGGCTCAGAGCAGTCTGAAAGCCCACATGATAACTCACACGGAATACACGTTCACATGCGACCGCTGCGCCAAGAGTTTCCGCGATAAAAGCAGCTTGAAGAGTCACATAAAACTCCACGACGGGGTGAAGCCCCACGTTTGCCCAGAGCCCGACTGCGGCAAAGCGTTCGTCAGGAAGTTCCAGCTGAAGGAACATTCTAGGGTGCACAGTGGTGAGAGACCGTTTATCTGCAACGAATGCGGGAAGACGTTCACTCAGAGCAGTTCGTTGCTGTTCCACCAGAGACTGCACAGTGGTGAGAGGCCTTACGTGTGCGAGATATGCGGTAGATCGTTCACGGATAAGTACGGGTTACACAAACATACTCGAGtgcacactggtgagaagccatacgCGTGCGAGAGCTGCGACCTGAGGTTCGCGTATCCGAGCGCTTTGCAGAAACACAGTACCACGCACACTGGAGAGAAGCCATTTGCGTGTGACAGGTGTTATAAGATCTTCGGCCGCAAATGTAGTCTGAGGAAACATGTGAAGACTCATTTGAGAGAGAAGCAGCTGAGACATCCCTTGATTCTGCCACTTTGA
Protein Sequence: MKNSENTELLIILERLTNVKHDAFGGARMCYLCYWRLQRCLKFAEMAQNSNQILKSIHKRGFEATRETLEMMNVKPFESLAVSSAQSMFTITMEEACTPYTTVKQEPLALKQEEVHDAIFDIAFVDEDEEIVKPLKLEIDIASTSAETKPINGPEGAFFCEKCSEPFIIKYDYERHLKTHLEKMYHCDKCPKQFKLKRGLLKHLKVHGNDKVYPCTQCNKQFEHRFALKKHMINHTEAGEPPEEFVCDICNRTVNNLYNLQKHKATHTEDSLICKTCGKNYLNKSTLKKHMRTHDLQHACDEPGCGKVFAQRNQLTIHSRVHTGERPFACNKCNRSYTLLDSLKFHQKTHTGEKSYKCSLCDKAFYKKINLGNHMKAHERETFDCLHCNKTFNLPVHLETHMLVHTPVKPHTCGLCNSAFAAQSSLKAHMITHTEYTFTCDRCAKSFRDKSSLKSHIKLHDGVKPHVCPEPDCGKAFVRKFQLKEHSRVHSGERPFICNECGKTFTQSSSLLFHQRLHSGERPYVCEICGRSFTDKYGLHKHTRVHTGEKPYACESCDLRFAYPSALQKHSTTHTGEKPFACDRCYKIFGRKCSLRKHVKTHLREKQLRHPLILPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -