Basic Information

Insect: Pasiphila rectangulata
Gene Symbol: -
Assembly: GCA_963082625.1
Location: OY720264.1:1832307-1840074[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0023 0.24 13.1 0.1 1 23 70 93 70 93 0.92

2 27 5 5.3e+02 2.5 0.3 3 23 119 140 117 140 0.91

3 27 0.016 1.7 10.3 0.4 2 23 163 184 162 184 0.97

4 27 0.00051 0.054 15.1 0.1 1 23 188 210 188 210 0.96

5 27 0.0046 0.48 12.1 1.0 1 23 215 238 215 238 0.94

6 27 1.2 1.3e+02 4.4 0.2 2 23 245 267 244 267 0.86

7 27 0.0022 0.23 13.1 3.5 2 23 275 297 275 297 0.97

8 27 0.0013 0.14 13.8 1.3 1 23 303 325 303 325 0.96

9 27 0.00017 0.018 16.6 1.8 1 23 331 353 331 353 0.99

10 27 0.22 24 6.8 0.1 1 23 421 444 421 444 0.92

11 27 3 3.1e+02 3.2 0.3 2 23 469 491 468 491 0.94

12 27 0.0048 0.51 12.0 0.7 2 23 514 535 513 535 0.97

13 27 0.00015 0.016 16.8 0.2 1 23 539 561 539 561 0.96

14 27 0.0001 0.011 17.3 0.6 1 23 566 589 566 589 0.94

15 27 0.89 94 4.9 0.4 2 21 596 615 595 618 0.79

16 27 0.00038 0.041 15.5 0.5 2 23 626 648 626 648 0.97

17 27 0.00041 0.044 15.4 2.0 1 23 654 676 654 676 0.97

18 27 5.1e-06 0.00054 21.4 0.9 1 23 682 704 682 704 0.99

19 27 0.011 1.1 10.9 0.3 1 23 780 803 780 803 0.96

20 27 0.023 2.5 9.9 0.2 2 23 873 894 872 894 0.96

21 27 0.00045 0.047 15.3 0.3 1 23 898 920 898 920 0.97

22 27 0.00016 0.017 16.7 0.9 1 23 925 948 925 948 0.95

23 27 1.3 1.3e+02 4.4 0.2 2 23 955 977 954 977 0.90

24 27 0.00089 0.094 14.3 3.5 2 23 985 1007 985 1007 0.97

25 27 2.9e-06 0.00031 22.2 0.6 1 23 1013 1035 1013 1035 0.96

26 27 1.3e-05 0.0014 20.1 1.6 1 23 1041 1063 1041 1063 0.99

27 27 0.00086 0.091 14.4 5.1 1 23 1069 1092 1069 1092 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0023	0.24	13.1	0.1	1	23	70	93	70	93	0.92
2	27	5	5.3e+02	2.5	0.3	3	23	119	140	117	140	0.91
3	27	0.016	1.7	10.3	0.4	2	23	163	184	162	184	0.97
4	27	0.00051	0.054	15.1	0.1	1	23	188	210	188	210	0.96
5	27	0.0046	0.48	12.1	1.0	1	23	215	238	215	238	0.94
6	27	1.2	1.3e+02	4.4	0.2	2	23	245	267	244	267	0.86
7	27	0.0022	0.23	13.1	3.5	2	23	275	297	275	297	0.97
8	27	0.0013	0.14	13.8	1.3	1	23	303	325	303	325	0.96
9	27	0.00017	0.018	16.6	1.8	1	23	331	353	331	353	0.99
10	27	0.22	24	6.8	0.1	1	23	421	444	421	444	0.92
11	27	3	3.1e+02	3.2	0.3	2	23	469	491	468	491	0.94
12	27	0.0048	0.51	12.0	0.7	2	23	514	535	513	535	0.97
13	27	0.00015	0.016	16.8	0.2	1	23	539	561	539	561	0.96
14	27	0.0001	0.011	17.3	0.6	1	23	566	589	566	589	0.94
15	27	0.89	94	4.9	0.4	2	21	596	615	595	618	0.79
16	27	0.00038	0.041	15.5	0.5	2	23	626	648	626	648	0.97
17	27	0.00041	0.044	15.4	2.0	1	23	654	676	654	676	0.97
18	27	5.1e-06	0.00054	21.4	0.9	1	23	682	704	682	704	0.99
19	27	0.011	1.1	10.9	0.3	1	23	780	803	780	803	0.96
20	27	0.023	2.5	9.9	0.2	2	23	873	894	872	894	0.96
21	27	0.00045	0.047	15.3	0.3	1	23	898	920	898	920	0.97
22	27	0.00016	0.017	16.7	0.9	1	23	925	948	925	948	0.95
23	27	1.3	1.3e+02	4.4	0.2	2	23	955	977	954	977	0.90
24	27	0.00089	0.094	14.3	3.5	2	23	985	1007	985	1007	0.97
25	27	2.9e-06	0.00031	22.2	0.6	1	23	1013	1035	1013	1035	0.96
26	27	1.3e-05	0.0014	20.1	1.6	1	23	1041	1063	1041	1063	0.99
27	27	0.00086	0.091	14.4	5.1	1	23	1069	1092	1069	1092	0.98

Sequence Information

Coding Sequence: ATGGACCAAATTACCACGAGGAAAGTAGGTCGACAGAGACTTAAGACAATCACCATAGCTAAGATCAAAAGAGAACCAAAAGAGGAAGGTGTGAAAATCGAATTAGTTAAACCCAGCAGCGTTCTGTACCGAAAACTAAAAGACAATGTAGAAGAAATTATCAAAAACTCAAACGCAACACCAATACAGAGAGTTAGTGGCATTGATTTCGTTTGCGCGTACTGCGACTATGCAAGCAAAAAGCCTGCTGAGCTGAAAAAGCATACGATAGCAGCACATAGTAACGAGACTTTAAAACTTAGGAAAAAATCCGCTCTAGAATTTCTGGTCAAACTAGACATAACATCTCTGAACTGCAATATATGCTGTCAAGACTTAGAAACAGTTGAAGAACTGGTGGAACATTTAAGAACTGTGCATGCAATAGAAATACACATGGACATAAAAAACCAAATCTTACCTTTCAAATTCCCCAAAGGTCCGCTTACTTGTTATATCTGTAAAGTTATTTTCTCCACATTCAAAGTTTTGAATGAGCATGTTAACACACACTACAGAAACTACATTTGTGGTGAATGTGGCGCCGGCTTCGTTAATCCCAAGAAACTTAAAACCCACAAACTCAACCATGTTACAGGAAGTTTCAATTGCTCGCAATGTTTCAAAGTTTATTCTACTCAAATCTCTTTAAAAGGTCATGAGAAACAAGTGCACGGAAAGAAGTTGCCCTTAAAATGCTGGCAATGTAGCGAGAGATTTAGCAGCATCATTCTCAAAGACAAACATATGGCAGAAGCTCATGGAGTGGTTTATCCCACCCCGAAATGTGACGCGTGCGACAAAGTCTTCCATCATAGGAGAGCATTGAACTCGCACATAAAGAGAGTTCACCTTATGGATCGTCGACACGACTGTACCCAGTGTGATATGAAGTTTGTAGGAACAGATGGGCTAAAGAATCACATGCTAAAGCATACGGGAGATCGTAAGTTCCAATGTGAAGTTTGCCAGAAGCGGTATTTACGGAAAACCACACTGAGGGAACACATGAGGATACATGAGAATGATCGGAGATTCAAGTGTCAACAGAGACTTAAGACAATCACCATAACTAAGATCAAACAAGAATCGTCGGACAAAAGTGAGAGAATAGAATTAGTAAAACGAGCAATTATTTTGTACCAAAAACTTAAAGACAATGTAgaagaaataatgaaaaactcCAATGCAACACCTATACAGCGGGTTAGTGGCTTAGATTATGTCTGTGCGTACTGTGATTTTGCTAGCTCAGATCCTGCTATACTGAAAAAACACACTATTGGAACACATAATAATGAAGTCCTGGGAGTGAAAAGCAAGTCTGCCAAAGAATTCTTAGTCAAACTCGATATAACATCTCTAAAATGCAATATATGCTGCCTAGACGTAAACACAGTTGAACAACTTTTGGAACATTTAAGAATTGCACACGAAAGGAAAATACACACGGATGTCAAAAATCAAATCTTACCCTTTAAATTCGGCAAAGGTCCTCTTACTTGCTGCATCTGTAATGTGGTtttccctaaatttaaacttctGAACGAGCACATAAACATACACTACAGAAACTATCTTTGCACCGAATGTGGTGCCGGCTTCGTTAATCCCAACAAGCTTCAAAGTCACAAACGCAGTCACATAACAGGAAGTTTCAAATGCCCTCAGTGCCCTAAAGAGTACTCGAAACAAATCTCTTTGAAAAATCACAAGCAAGCAGCGCACGGGAAAATTATGCCCATGAAATGCTGGCACTGTAACGAAAGATTTAATAGCATTCTTGTAAAGGAGAGGCACATGGCTGCAGCACATGGTATTGTAGTCCCCGCTCCTAAGTGCGAGATTTGTGACAAAGAATATGCTAATAGAAAAGCATTTAACTCACATGTGAAACGAATCCACCTTATGGATCGTCGACATGAGTGTTCCGAATGTGATATGAAATTTTACACGACTGCAAGTTTAAAAATGCATATGGTAAAACACACTAACGATCGAAAGTTTCAATGCGATGTTTGTCTCAAACTGTATTCAAGAAAGTCAACATTGAGGGCTCACATGCGAATTCACGACAATGATCGGAGATTCAAGTgtcAACAGGAACATAAGCCCTTCACCGTAGCTAAGATCAATCAAGAACCGAAAGAGAAACCTGTGAAAATCGGaccaattaaattaattaaagttcAGAAAAGCAGCGGTGTTCTGAATCTGTACCGCAAACTCAAAGACAATCTGGAAGAAGTAACCAAAAACTCCAATGCAACACCCATACAGCGAGTCGATGGCTTCGATTATGTCTGTGCGTACTGTGATTATGTTAACACGAAACCTGCTGACCTGAAAAAGCATACGTTATCAACACACACTGGTGATACCATAGACTATACAAGCAGGACGGCCAACGAGTTCGCAATTAAACTCGATATAACATCTCTGAACTGCAATTTATGCTGCCTAGACATAGATACAATTGAACAACTGCTAGAACATTTACGTACTGCACACAGCATAAATATACATACGGATATCAAAAATCAGATCTTACCCTTCAAATTTAGCAAAGGTCCTCTAACTTGCTACATCTGTAAAGCTATTTTCCCAACGTTCAAAGGTTTAAACGAACACGTTAATTCACACTACAGAAACTACGTTTGCACCGACTGTGGCGCCGGTTTTGTGAATCTCCGAAAGCTTAACACTCACAAACTCAACCATAAAACAGGACAATTCGCTTGCTCTCAATGCTCAAAAGAGTTTTCGACTCGGGTCACATTGAAAAATCACGAGAAAATTTTGCACGGGAAGAAGATGCCGCTTAACTGCTGGCAATGTAGCGAGAGATTTAACTCTCTTGTTCTGAGGGACAAGCATATGGCGGAAGCGCATGGCGTTGCTTTCCCCACTCCTAAATGCGAGGCTTGTGACAAGGTCTTTCCTCATAGGAAATCACTGCACTCGCACATAAAAAGGGTGCATCTCATGGATCGTCGTCACGATTGTCCGGAATGTGATATGAAGTTCGTAGACAAGGGAGAGCTAACAAAACACATGATAAAACACACAGGCGATCGTGAGTTTCAATGCAATGTTTGCCTCAAGCGTTATGTTAGGAAGAACACGTTGAGAGAACATATGAGGATCCACGAGAACGATCGGAGATTCAAATGTGAACATTGCGACATGACTTTTGTTCAGAAGTGTAGTTGGAAGGGTCACATACGAAGCAAACACGATGATGTTGCCTAG
Protein Sequence: MDQITTRKVGRQRLKTITIAKIKREPKEEGVKIELVKPSSVLYRKLKDNVEEIIKNSNATPIQRVSGIDFVCAYCDYASKKPAELKKHTIAAHSNETLKLRKKSALEFLVKLDITSLNCNICCQDLETVEELVEHLRTVHAIEIHMDIKNQILPFKFPKGPLTCYICKVIFSTFKVLNEHVNTHYRNYICGECGAGFVNPKKLKTHKLNHVTGSFNCSQCFKVYSTQISLKGHEKQVHGKKLPLKCWQCSERFSSIILKDKHMAEAHGVVYPTPKCDACDKVFHHRRALNSHIKRVHLMDRRHDCTQCDMKFVGTDGLKNHMLKHTGDRKFQCEVCQKRYLRKTTLREHMRIHENDRRFKCQQRLKTITITKIKQESSDKSERIELVKRAIILYQKLKDNVEEIMKNSNATPIQRVSGLDYVCAYCDFASSDPAILKKHTIGTHNNEVLGVKSKSAKEFLVKLDITSLKCNICCLDVNTVEQLLEHLRIAHERKIHTDVKNQILPFKFGKGPLTCCICNVVFPKFKLLNEHINIHYRNYLCTECGAGFVNPNKLQSHKRSHITGSFKCPQCPKEYSKQISLKNHKQAAHGKIMPMKCWHCNERFNSILVKERHMAAAHGIVVPAPKCEICDKEYANRKAFNSHVKRIHLMDRRHECSECDMKFYTTASLKMHMVKHTNDRKFQCDVCLKLYSRKSTLRAHMRIHDNDRRFKCQQEHKPFTVAKINQEPKEKPVKIGPIKLIKVQKSSGVLNLYRKLKDNLEEVTKNSNATPIQRVDGFDYVCAYCDYVNTKPADLKKHTLSTHTGDTIDYTSRTANEFAIKLDITSLNCNLCCLDIDTIEQLLEHLRTAHSINIHTDIKNQILPFKFSKGPLTCYICKAIFPTFKGLNEHVNSHYRNYVCTDCGAGFVNLRKLNTHKLNHKTGQFACSQCSKEFSTRVTLKNHEKILHGKKMPLNCWQCSERFNSLVLRDKHMAEAHGVAFPTPKCEACDKVFPHRKSLHSHIKRVHLMDRRHDCPECDMKFVDKGELTKHMIKHTGDREFQCNVCLKRYVRKNTLREHMRIHENDRRFKCEHCDMTFVQKCSWKGHIRSKHDDVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -