Prec034903.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pasiphila rectangulata
Gene Symbol
dar1
Assembly
GCA_963082625.1
Location
OY720262.1:10278132-10288116[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 8.5 9e+02 1.8 7.1 1 23 162 183 162 183 0.91
2 19 0.00025 0.027 16.0 3.5 1 23 187 209 187 209 0.98
3 19 2.8e-06 0.0003 22.2 0.4 1 23 228 250 228 250 0.98
4 19 0.00018 0.019 16.5 1.7 1 23 261 283 261 283 0.98
5 19 0.0003 0.031 15.8 3.5 1 23 288 310 288 310 0.99
6 19 0.00071 0.075 14.6 0.4 2 23 315 338 314 338 0.92
7 19 6.6e-05 0.007 17.9 1.0 5 23 347 365 344 365 0.96
8 19 1.9e-05 0.002 19.6 3.0 1 23 371 393 371 393 0.98
9 19 9.3e-07 9.9e-05 23.7 1.2 2 23 400 421 399 421 0.97
10 19 8.8e-05 0.0093 17.5 0.0 1 23 425 449 425 449 0.97
11 19 2.8e-05 0.0029 19.1 4.9 1 23 455 477 455 477 0.98
12 19 5.7e-06 0.00061 21.2 0.9 1 23 483 505 483 505 0.98
13 19 0.00033 0.035 15.7 3.9 1 23 511 533 511 533 0.96
14 19 1.4e-05 0.0014 20.0 0.5 1 23 537 559 537 559 0.98
15 19 8.2e-05 0.0086 17.6 2.5 2 23 566 589 565 589 0.93
16 19 1.3e-05 0.0014 20.1 1.1 1 23 595 617 595 617 0.97
17 19 4.4e-08 4.7e-06 27.9 0.6 1 23 623 645 623 645 0.98
18 19 0.0014 0.15 13.7 0.0 1 23 651 673 651 673 0.95
19 19 1.5e-05 0.0016 19.9 6.1 1 23 680 702 680 702 0.97

Sequence Information

Coding Sequence
ATGAAAAGCATTGACGACTTTGATCTTCAAAATGTCTTTGAAAAACTAACAAACTTAAAGATCTTTGACCAGCTGACCGGCTGCGAGAATGTGTGCTATGTGTGTTCCTGGCAGTTGCTGAAATATGACAGGTTTGCAGCCATGGCTCACAAGTCTGACTCCATACTCAAGGACTTACACAGGAGGGGCTTGGAGGCAACAGAGGAGACACTACTCTTGATGAACATAGCAATCACACGAAACCTATCCATCAACAATGATAGATCAATGGTTACAATAACACTCACAGAACCAGATGAATCAGAAACACTAGTGAAGCAGGAGCCCCTGTCTTTGAAACAGGAGGACACCATGGACGGAATAGACTTTGGAATTGCCTTTGCGGACAATTTAGAAGTGGACGAACCGAACGAGTATAAACAGTTTAAGGCAGAAGGGAGCCTGTCGCCAGAGAAATCAGGGCAGAGGAGTCAGAAAGATTCATTCTTCTGTGACAAATGCAATGAGTCGTTTTTGTTGAAACATCACAACAAACATATGAGACTACACAATGAGGGCTATAGCTGCGACAAATGCTCGAAGAACTTCAAGTTTAAAAATAGATTGATCAAACACATGCTCAACCATAGCGATGAGAAAGCGAAACAGAAAAGAAAAACCTCTACAACGTCTGACAACAGATACACATGCGATGTTTGTAACAAAACCGTCAGCAACCTATACAACTTGCAATTGCATATGTCGGTACACAATAAAAAGGTTGTCAAACAAGATGGCGAATTTGTGTGCGACATTTGCAATCGAGCACTGAACAATCTCCACAACTTCCAAAAGCACAGAGCGACGCATGCAGAGGAGAACTACACCTGCAGTAAATGCTCGAAACGCTATCTGAACAGAGATTCGTGGCGGAAACACATGCGCACGCACACCGCCCAGCACGCGTGTGACCACCCTGGCTGCGCGAAGGTGTTCCCCCAGAGGAGCCAGCTGCTCGTCCACGCCAGGGTGCATACGGGGGAGCGGCCCTACACCTGCGAATGCGGGAAGTCGTATACCAAACAGGAGTCTTTGAGGGTCCATCAGAAAACGCACTCCTCTGAGAAACCGCACAAGTGTCTGACTTGCACCAAAGCGTTTAATTCTAAAGTGAACCTGTTGAATCACATTAAGACGCACACGGAGGGAGATGGGTTAAGTTGTATGGACTGTGGTAGGACGTTCTCTCTCGCTGTGCATCTGGAGAAACATATGAGAACGCATACCAAGCGTTATGTCTGCGAGGAAGGGGGGTGTGGAAAGGCGTTCATGAAGAGTGAGTCGCTAAAGGCGCACGAGAAGATACATTCGGGCGTGAAGACGCATAAATGCGGGACCTGCACCAAAGGCTTCTACagAAAGCGCAACCTACTGAAACACATGAGCACGCACGCCCAGAAGGAAACCTACGACTGCCAGCTCTGCGACCGCACCTTCTCTCTGCCCGTCCACCTGGAGACGCACATGCTGACGCACACGCATCTGAAGCCGCACGCGTGCACTCACTGCGATCTAGCCTTCGCCACTCAGTGCAGCCTCGCCGCGCACACGAAGACGCACGAGTACAAGTATACTTGCGAGAGGTGTGCCAAGAGCTTTGCAGACAAAGggACCCTGCAGAGCCACATCAAACTGCACGACGGGATAAAGCCCCACGCGTGCCCACACCCCAGCTGTGGGAAGGCTTTCGCGCGCCGCTACCACCTGAAGGAACACGCGCGCGTGCACACGGGGGAGAAACCTTTCGTCTGCAACGAGTGCGGGAAAAGTTACACCCAAAGCAGTGCTCTGTTCTTCCATCAGAGGCTGCATTCCGGCGAGCGACCGTTCGTTTGCGACATTTGCGGCCGGACCTTCACAGACAAGTACGGGCTGCAGAAGCATACCAGAGTGCATACAGGAGAGAAACCGTACGCGTGCGACGGCTGCGAGCTCCGCTTCGCGTACGCGAGCGCGCTGCGCGACCACcgcgcggcgcacgcgcacgGCGACAAGCCCTTCGCGTGCGAGCGCTGCTTCAAAACCTTCTGCAGGAAGAGCAACTTGAAGAAACATGCGAAGACGCATTCTAGAGAGAAACAGTACTTCAAGACTCCTTGA
Protein Sequence
MKSIDDFDLQNVFEKLTNLKIFDQLTGCENVCYVCSWQLLKYDRFAAMAHKSDSILKDLHRRGLEATEETLLLMNIAITRNLSINNDRSMVTITLTEPDESETLVKQEPLSLKQEDTMDGIDFGIAFADNLEVDEPNEYKQFKAEGSLSPEKSGQRSQKDSFFCDKCNESFLLKHHNKHMRLHNEGYSCDKCSKNFKFKNRLIKHMLNHSDEKAKQKRKTSTTSDNRYTCDVCNKTVSNLYNLQLHMSVHNKKVVKQDGEFVCDICNRALNNLHNFQKHRATHAEENYTCSKCSKRYLNRDSWRKHMRTHTAQHACDHPGCAKVFPQRSQLLVHARVHTGERPYTCECGKSYTKQESLRVHQKTHSSEKPHKCLTCTKAFNSKVNLLNHIKTHTEGDGLSCMDCGRTFSLAVHLEKHMRTHTKRYVCEEGGCGKAFMKSESLKAHEKIHSGVKTHKCGTCTKGFYRKRNLLKHMSTHAQKETYDCQLCDRTFSLPVHLETHMLTHTHLKPHACTHCDLAFATQCSLAAHTKTHEYKYTCERCAKSFADKGTLQSHIKLHDGIKPHACPHPSCGKAFARRYHLKEHARVHTGEKPFVCNECGKSYTQSSALFFHQRLHSGERPFVCDICGRTFTDKYGLQKHTRVHTGEKPYACDGCELRFAYASALRDHRAAHAHGDKPFACERCFKTFCRKSNLKKHAKTHSREKQYFKTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
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80% Identity
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