Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0065 13 7.0 2.4 17 41 8 29 2 32 0.86

2 10 0.68 1.4e+03 0.5 5.7 6 28 26 46 25 57 0.73

3 10 1.1e-05 0.023 15.8 0.3 12 38 56 79 48 83 0.86

4 10 3.6e-05 0.073 14.2 2.7 1 43 74 112 74 113 0.89

5 10 0.028 56 5.0 0.8 18 40 119 138 117 142 0.78

6 10 0.13 2.6e+02 2.8 1.5 13 39 142 165 133 172 0.73

7 10 0.029 59 4.9 0.4 18 31 175 188 172 196 0.75

8 10 0.79 1.6e+03 0.3 5.0 14 38 199 220 189 225 0.80

9 10 0.0012 2.4 9.4 0.7 17 40 230 250 223 252 0.88

10 10 0.00084 1.7 9.9 0.4 18 44 259 282 255 282 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0065	13	7.0	2.4	17	41	8	29	2	32	0.86
2	10	0.68	1.4e+03	0.5	5.7	6	28	26	46	25	57	0.73
3	10	1.1e-05	0.023	15.8	0.3	12	38	56	79	48	83	0.86
4	10	3.6e-05	0.073	14.2	2.7	1	43	74	112	74	113	0.89
5	10	0.028	56	5.0	0.8	18	40	119	138	117	142	0.78
6	10	0.13	2.6e+02	2.8	1.5	13	39	142	165	133	172	0.73
7	10	0.029	59	4.9	0.4	18	31	175	188	172	196	0.75
8	10	0.79	1.6e+03	0.3	5.0	14	38	199	220	189	225	0.80
9	10	0.0012	2.4	9.4	0.7	17	40	230	250	223	252	0.88
10	10	0.00084	1.7	9.9	0.4	18	44	259	282	255	282	0.94

Coding Sequence: ATGACGTTCACCTCGGGAAGGCATATGTGTAAAATATGCCAGAAATCGTTCGCGAAGCGCCAGAACCTACGAAAACATATCCAAACGCACACGCGAATAAAACTAGAATGCACCCACTGCGATAAGACATGCCATAGCCAAGAACAACTGGACAAGCACCTAGAGACCCACACCAAAGTGATCAAATGCCCCGACTGCGGCAAAGTTTTCTCCCGCAGCAGCAATCTGTGGCAACACAAACAAGTGCACTTGAAGGAGAAACCTTATAACTGTGACACGTGTGAGAAGACATTCTCCATTAAATCCAATCTCCTGAGACATCAACGGGGCAGATGCAAGCCGCCTGCGGACCTTGTGTGCCATGTTTGTGATAAAGAGTTCAAACGGTCATATCTCCTTAAGAGCCATCTAGTGAAGCATGAGACGGAACGCCCCTACACCTGTGATATATGCAAGCTCACTTTCAAATACAAAAGCGCTGTCCAAAGACATCTGCAATGGCACTCCGGGACGAGACCATACAAATGCTCATACTGCCCGAAGACATTCACACACTCAGGTCTCATCAAACCTCACCTACGGACTCATACAGGGGAGAAACCCTACCAATGCACTATTTGCACCAAAATGTTTACACACAAACATAACATGGAACGGCATAAAATGAACCACAGTAGGATAAAGCAGCTTGTCTGCGATTTGTGCCACAAAAAGTTCCCCAGAGAAAGCCGACTGAGGTACCATATGAAAGTCCATGTCGGTGGGAAATACTTTGACTGTGGAGTGTGTACTAAGCAGTTTACGCACAAGTCCAATGTGTTGAGGCATTATGAGAGGAAGCATCCCGGTAAAACGTGGTCTGGGAAGGAGACAGATGCATCAGTGGCGATGAAGGTCTGGGATGTGGCTAAGGATCTGCTGAAGCCACATTACACACAGCCGGAGGAGATCTTGGGGTCTTTGTGA
Protein Sequence: MTFTSGRHMCKICQKSFAKRQNLRKHIQTHTRIKLECTHCDKTCHSQEQLDKHLETHTKVIKCPDCGKVFSRSSNLWQHKQVHLKEKPYNCDTCEKTFSIKSNLLRHQRGRCKPPADLVCHVCDKEFKRSYLLKSHLVKHETERPYTCDICKLTFKYKSAVQRHLQWHSGTRPYKCSYCPKTFTHSGLIKPHLRTHTGEKPYQCTICTKMFTHKHNMERHKMNHSRIKQLVCDLCHKKFPRESRLRYHMKVHVGGKYFDCGVCTKQFTHKSNVLRHYERKHPGKTWSGKETDASVAMKVWDVAKDLLKPHYTQPEEILGSL

Sequence clustering based on sequence similarity using MMseqs2