Prec035193.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720263.1:1534167-1536842[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 0.0001 23.0 0.0 2 41 16 56 15 59 0.85 2 2 6.9 4.1e+03 -1.3 0.0 1 10 793 802 793 805 0.90
Sequence Information
- Coding Sequence
- ATGGTGAGCAACTATAAACGCAAAACAGAAAGAGGGTCTTACTCCAAAGAAAACCTAGAAAAAGCGGTAAAAGCTGTAAAAAATGGTGATTTTAGTGGTTACAAAGCTTCGCAGCTGTATAAAATTCCCCGGATGACGATCATGGATCACGTGAACAACAGAAGAACAAAGTCAAATACTCTGGGAAAAAATACGGCCTTAACTCCAGAAGCCGAATCTAAGTTAGTCAATAGCCTTAAATTAATGGAAAAATATGGCTTTGGGCTAAGCCGCAAGGAGTTGCTAGAAACGGTTGGCGAATACGTAGACAAAAACAACATCTCTaccaactttaaaaacaaaacccCAGGTCAGGCGTGGTTTACAGGCTTTAAAAAACGCCACAATTTGTCGATCAAAAAACCACAGGCCGTCGAGTACGCAAGAAAAAGAGCCATTGATCCATTTATTGTATTCCCTTATTTCGATCTCCTTAAAAATACActagaagaattaaaattaacgGAGAAGCCCGAAGCAATCTGGAATCTCGACGAGACTAGTTTTTCCAGAGATCCTGAAAAAACCAAAATTGTCGGAGCCAAAGGACATGCAGCCACGAGAGTGATTTCTTCCCCAGGCCGGGAAAATACGACAGTTTTGCTTTGCGCAAATGCACTCGGCGAAAAGGCGCCTCCGATGGTTGTTTACAAAGGTAAAAATGTATGGGACTCGTGGATGTCCCCGGATGCCTATCCAAATACATCCTACGCGGCTACTGCAAATGGCTGGATGGAGTCAGAAATATTTGAACGATACTTCACAAAGACGTTTTTGCCCACCATTGGAAATCAACGTCCGATTTTACTTATATATGATGGGCACGCAACTCATGTCGGgttaaatattatagaaaaagcTCGTGAAGCTGGAGTTACTATACTAAAATTACCTGCACATACTAGTCACGTTTTGCAGCCACTGGACGTGTCGCTGATGAAGTCCTTTAAAGACAAATGGGACGTATTGCTGGTCAAATGGCAGCGGTTAAATGTGGGAGTCCCCCTACCGAAAAGAGAATTTGCTCGCCTGATAGGAGACATTTGGAAGCAAATTGACGgccaaattttaaaaaatggtTTTCGCAAGGCAGGAATCTTTCCACCTAATGTTAAAGAAattgaagaaaaacattttgatTCGTTAATGCTACAACGTTGGAGACAACACACAAAGAAGATTGCTACTGAAAATTCAGACAAAATTGTTGCTAAAAACTCACCAAAGAGCCTGCTAGCACTGTCTCTAGATTGCATTACAAAAGAAGCAGCTAACGTAGCTTCTGTCGAGTGTGATCACTCAGGTCAGAATACTACTAAAAAAACTGATACTCTAAGTTTAATAGACTTGGAAGATCTTGTACCATCTTCGCTAGAATATGAAGAACCAGAAAATACTCATCAAATAAAAGATAATCTATTCATTGCGTTGAATAAAGATTCGGAATTTCCAGGCAGACCTGAAAGTTCACGCATTTGTGTATTGGAAGACAAAGTTGTGTCATTTGAAGAACTTCTATTGACAAAAGTAAAACCTGGTCATAAGGAAACAGTTAAGCGGCGCAAGATAGCTCCAGGAGCTGAAGTGATTACACATGAAAATGTACTCAAGCGCAAAAtcgaagaaaaaattaaaaatattaaaaaagaaccTCAGACAAAAAAGGGAAAAGGTATTGGAAAAAAGAGACGTGATagtgaaaaagaaaacaaagagaaaaatattaataaaccaggagccgaaattataacacaagATGAACGCCTCAAAATTGAAGAAAAAAGTAAACATATAACAAAGGAAGTTCAGACGAAAAAAGGAAAAGGTATTGGAAAAAAGAGTCGTGATCGTAAAACGGTAAGCAaagataagaataataataaatctaaagCAACGAAAACGGCTCAAATAATATCCCCAGACTCCACAAGTGTTTCCGATTGTGGTGATTCCGATGCTCTCAATTGCGATGAAATCGTTTTTATAGATACAAACGTGGTGTCCCCAATAGCAAAAGAACGAAAAAAGATTCGTAGTGAAAAAGAAGACAAAAAGAAGCATAGTAAAAAACGTAAAGCAAAGAAACGGGCTAAAATAATATCTCCAGACTCCACAAGTGTTTCTGACTGTGTAAGTATTCACAGTGATTCGGACGATTGtgatgaaaacatttttatagatACAAACATGGTGTCCCCGATATCAATAAAAGAAACAGAGAATATCAAAGAGTCAAACGCATTCTGTAACAGTTCTGATAGAAGAAACGATGTGACAATGGAAGATAGTAATACACCTGATACATGGAAAGGGGGAAGGGAGAACAAGACGGAAAATACAGAAGATGAAATGaatcttgcaataaatgatcATGTATTGGTAAGATATTACAGCCGAAAAAAGTGGACATACTATGTGGGATACGTAGAAGGAATAAAAACTACCGAAGATGTGCATTACACTGTAAGGTTTTACAAAACTGTTAAAAGTCCTCTAAAATTCGTTCTGAGTAAAAAAGTAGATAGTGACGATGTACCCATCCACTCTGTCGTAAAGAAAGTACATTTGAGGCAAGTGCCGGACAATcctaaagagtttgttttgtCTGATAATGACAACacgatttatttttcataa
- Protein Sequence
- MVSNYKRKTERGSYSKENLEKAVKAVKNGDFSGYKASQLYKIPRMTIMDHVNNRRTKSNTLGKNTALTPEAESKLVNSLKLMEKYGFGLSRKELLETVGEYVDKNNISTNFKNKTPGQAWFTGFKKRHNLSIKKPQAVEYARKRAIDPFIVFPYFDLLKNTLEELKLTEKPEAIWNLDETSFSRDPEKTKIVGAKGHAATRVISSPGRENTTVLLCANALGEKAPPMVVYKGKNVWDSWMSPDAYPNTSYAATANGWMESEIFERYFTKTFLPTIGNQRPILLIYDGHATHVGLNIIEKAREAGVTILKLPAHTSHVLQPLDVSLMKSFKDKWDVLLVKWQRLNVGVPLPKREFARLIGDIWKQIDGQILKNGFRKAGIFPPNVKEIEEKHFDSLMLQRWRQHTKKIATENSDKIVAKNSPKSLLALSLDCITKEAANVASVECDHSGQNTTKKTDTLSLIDLEDLVPSSLEYEEPENTHQIKDNLFIALNKDSEFPGRPESSRICVLEDKVVSFEELLLTKVKPGHKETVKRRKIAPGAEVITHENVLKRKIEEKIKNIKKEPQTKKGKGIGKKRRDSEKENKEKNINKPGAEIITQDERLKIEEKSKHITKEVQTKKGKGIGKKSRDRKTVSKDKNNNKSKATKTAQIISPDSTSVSDCGDSDALNCDEIVFIDTNVVSPIAKERKKIRSEKEDKKKHSKKRKAKKRAKIISPDSTSVSDCVSIHSDSDDCDENIFIDTNMVSPISIKETENIKESNAFCNSSDRRNDVTMEDSNTPDTWKGGRENKTENTEDEMNLAINDHVLVRYYSRKKWTYYVGYVEGIKTTEDVHYTVRFYKTVKSPLKFVLSKKVDSDDVPIHSVVKKVHLRQVPDNPKEFVLSDNDNTIYFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636288;
- 90% Identity
- iTF_01161283;
- 80% Identity
- -