Prec021448.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720250.1:946209-953068[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.5e-12 4.5e-09 37.0 0.0 4 39 306 342 303 346 0.90 2 4 1e-11 6e-09 36.6 0.4 2 39 358 395 357 398 0.93 3 4 3.3e-14 2e-11 44.5 0.1 2 45 413 457 412 457 0.96 4 4 1.9e-17 1.1e-14 54.9 0.0 1 43 464 507 464 508 0.96
Sequence Information
- Coding Sequence
- ATGCCTAACTCTGGAACTGCTACCGTAAAATGTGAGCCTCCATCTGATGAAGAAGACAGTCGACCACAATTACCTGACCTCTTTTTAGACAACACGAGTCGCGATGTACTGGAGGAGCTGGCTCCTTTGGCGCCTGCGGGGCCCGCGGCCACGCCGGTCTGCGTGAAGCAGGAGCCCGGCCAGCACGCAGGGAGTCTCGAGACGCTGGAGTCCGCGCCGCATGCCGCCCTCAGTGAGCCCGGCCAGCACGCAGGGAGTCTCGAGACGCTGGAGTCCGCGCCGCATGCCGCCCTCAGTACTGGAGGAGCTGTCTCCAGAACCGTCTGCGTGAAGCAGGAGCCCGGCCAGCACGCAGGGAGTCTCGAGACGCTGGAGTCCGCGCCGCATGCCGCCCTCAGTACTGGAGGAGCTGTCTCCAGAACCGTCTGCGTGAAGCAGGAGCCCGGCCAGCACGCAGGGAGTCTCGAGACGCTGGAGTCCGCGCCGCATGCCGCCCTCAGTACTGGAGGAGCTGTCTCCAGAACCGTCTGCGTGAAGCAGGAGCCCGGCCAGCACGCAGGGAGTCTCGAGACGCTGGAGTCCGCGCCGCATGCCGCCCTCAGTACTGGAGGAGCTGTCTCCAGAACCGTCTGCGTGAAGCAGGAGCCCGGCCAGCACGCAGGGAGTCTCGAGACGCTGGAGTCCGCGCCGCATGCCGCCCTCAGTGGATCATTATTGGAGAGACACATGTCAATGTTGAGGTCATCTGAGATTCCCAGCTCCGCAGACTTCACGCCACTGCAAGCCGTCAAAGATGAGCCCACTTCTGAAGGAGAATACCAGTCCATGGAGCAGACGAGCGGCGACGAACAGAGTGACTCCAGCGTACTGGAGCCCGAGGGTTCTCGAGGCAGCCCTAAGACCTGGCGCCAACAGGACATGGACCATGCGCTggatgcgctaaggaaccataaCATGAGTCTTACCAAGGCCTCATCCATCTATGGCATTCCGTCGACCACGCTGTGGCAGCGCGCGCACCGCCTGGGCATCGACACGCCGAAGAAGGAGGGCGCTACCAAGTCCTGGAGCGAAGCGGACTTGCGCGCCGCCCTGCACGCGCTGCGCGCCGGGGCCATCTCCGCCAACAAGGCCAGCAAGGCTTACGGAATACCCAGCAGCACACTGTACAAGATAGCGCGGCGCGAGGGCATCCGCCTGGCGGCGCCGTTCAACGCGGCGCCCGTGGCGTGGCGCCGCGGCGACCTGCAGCGCGCGCTGCTCGCCAtccgcgccggccgcgcctcCGTGCAGCGCGCCGCCTCGCAGTACGGGATCCCCACCGGCACTCTTTACGGCCGCTGCAAAAGGGAAGGCATAGAGTTATCGCGTTCAAACCCCACACCTTGGTCCGAGGACGCGATGGGAGAGGCGTTGGAAGCTGTTAGGGTGGGTCAGATGTCAATCAACCAGGCAGCTATCCACTTCAACTTGCCATATTCTTCACTTTATGGAAGATTCAAGAGGTGCAAGTATCAAACTCCGACCCTGGCACCACAAGATGTACAAAATCCTCCTGAATTGGCGCCCAATCAAGATCTAAATTACTACCATCAGATGCCAATGTGCTCGGAGCAGGAACCAGCCGTGCAGCATCAATATCCTCACGAGTACGCTCAAGATACATCGACTCATAACATGATGCTCCAAGACCCTTATTCTGGGCAAGCGATGTATTACAACCAGAACTTTAGCAGCATAGCCACCAGCTGA
- Protein Sequence
- MPNSGTATVKCEPPSDEEDSRPQLPDLFLDNTSRDVLEELAPLAPAGPAATPVCVKQEPGQHAGSLETLESAPHAALSEPGQHAGSLETLESAPHAALSTGGAVSRTVCVKQEPGQHAGSLETLESAPHAALSTGGAVSRTVCVKQEPGQHAGSLETLESAPHAALSTGGAVSRTVCVKQEPGQHAGSLETLESAPHAALSTGGAVSRTVCVKQEPGQHAGSLETLESAPHAALSGSLLERHMSMLRSSEIPSSADFTPLQAVKDEPTSEGEYQSMEQTSGDEQSDSSVLEPEGSRGSPKTWRQQDMDHALDALRNHNMSLTKASSIYGIPSTTLWQRAHRLGIDTPKKEGATKSWSEADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLQRALLAIRAGRASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQTPTLAPQDVQNPPELAPNQDLNYYHQMPMCSEQEPAVQHQYPHEYAQDTSTHNMMLQDPYSGQAMYYNQNFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -