Basic Information

Insect: Parochlus steinenii
Gene Symbol: -
Assembly: None
Location: scaffold300:50216-53458[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.2 1.3e+02 3.0 3.9 2 23 121 143 120 143 0.92

2 9 0.037 1.5 9.1 1.2 1 23 149 172 149 172 0.96

3 9 0.049 2 8.7 0.5 2 23 329 351 328 351 0.96

4 9 2.3e-05 0.00092 19.1 1.4 1 23 357 379 357 379 0.98

5 9 0.0035 0.14 12.3 1.3 2 23 387 408 386 408 0.97

6 9 0.049 2 8.7 0.5 2 23 575 597 574 597 0.96

7 9 6.2e-05 0.0025 17.8 1.2 1 23 603 625 603 625 0.98

8 9 0.0035 0.14 12.3 1.3 2 23 633 654 632 654 0.97

9 9 0.047 1.9 8.7 0.4 1 12 755 766 755 767 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.2	1.3e+02	3.0	3.9	2	23	121	143	120	143	0.92
2	9	0.037	1.5	9.1	1.2	1	23	149	172	149	172	0.96
3	9	0.049	2	8.7	0.5	2	23	329	351	328	351	0.96
4	9	2.3e-05	0.00092	19.1	1.4	1	23	357	379	357	379	0.98
5	9	0.0035	0.14	12.3	1.3	2	23	387	408	386	408	0.97
6	9	0.049	2	8.7	0.5	2	23	575	597	574	597	0.96
7	9	6.2e-05	0.0025	17.8	1.2	1	23	603	625	603	625	0.98
8	9	0.0035	0.14	12.3	1.3	2	23	633	654	632	654	0.97
9	9	0.047	1.9	8.7	0.4	1	12	755	766	755	767	0.92

Sequence Information

Coding Sequence: ATGAAAAAACCACGGAGCAAATGGGAGATTCCATCTGAACTCGTTTGCCGAAATCATTTTTCAAAAGAAGATTTTAAGGGAGACAAAATCAAAGACACGGCAGTGCCATCATTTAATCTAAAACCATCACTAGAAGAAACTACGAAAAAATTTGAATGTATGGAAAACTCAGTGGAAAGATTCGATGAAATAGATTCGGATTTGGATGTCGATGAACTATTAGTAAGTTTTGAAACAACACCACCATTGCCTGATCAGATGTTTTTTGATGCAATCGCTGAGAAACCTGCCGATGAATCGTTCACAACTCCTATAATAATTCCAGTTAAAAGTTTTGTTCCTGAAGATAATTCGCCACAAACCTGTACATTCTGTGGAGTTACGTGTCCAAATAAGCATCGCCTTGAATTTCATATCCAATTGAGGCATAATATTCCGAAAATTTTTGCGTGTGATACTTGTCCTGAGAAATTTGACACAGATCTTTACCTCAAACTCCACAAAAAGAAGAAGCATAGCGAATGTACCCCCGAATTATGTTCACACTGTGGGTTAAGAGTGCAAGATAGTGACATTTGGTTGATTCACAAAAAATTCCATAAGCGATATCCAGAAAAATCSGGAACTATCCCTCGAATGCTCATTTACGAACTGAATAAGCACAGAGAAGAGAAGACCAAATCTCTTATGAGAAAAACTCTTGTAAATGGCAAAAAGTATGAGATGAAAGCGAAAGCGCAAATAGTAAAACTAGACGTTATACCACCACTGAGTCCAGAAGTTGCCGTTGTCATAAAAGATACAGGATTAGTGCCTAAGACACAACACATCAATGATATTTCAGACCCGCTGGATGAAGAGATCAAGACTAATGAAAAAAAATTGGGAATTAACTCAGGAATTCAAGAGGTAATAAATCAAGGAAGTCAACCATCACTCAATGAAGCACCTCCTGATCAAGAAAATTCTGATGATTTCACAGTTCCCTGCGGTATATGTCAACAATATTTCCCAAACGAGCGAGAAAAAAAACAACATCAAAACAAGAAACATTATAAAGGACCTTTTTACAACTGTTTAGACTGCAAAAGAAAATTCCGCTCGCTCGCGAGTTTGAAAGTACATGAGAGAACGCACGCAAATAATACTGTTGACAAGAAATGCGATGTATGTGATGAGCTTTTTTCCAGCAGCTTTAAAATGCGAAATCATTTGATGAATCATTCAATGATAGAGAAGATAAAGGCTCAGGATAGCGAATGTATCCCCGAATTATGTTCACACTGTGGGTTAAGAGTGCAAGATAGTGACATTTGGTTAATTCACAAAAAATTCCATAAGCGATATCCAGAAAAATCCGGAACTATCCCTCGAATGCTCATTTACGAATTGAATAAGCACAGAGAAGAGAAGACCAAATCTCTTATAACAAAAACTCTTGTAAATGGCAAAAAGTATGAGATGAAAGCGAAAGCGCAAATAGTAAAACTAGACGTTATATCACCACTGAGTCCAGAAGTTGCCGTTGTCATGGAAGATAAAGGATTAGTGCCTAAGACACAACACATCAATGATATTTCAGACCCTCTAGATGAAGAGATCAAGACTAATGAAAAAAAATTGGGAATTAACTCAGGAATTCAAGACGTTATAATTCAAGGAAGTCAACCATCACTCAATGAAGCACCTCCTGATCAAGAAAATTCTGATGATTTCACAGTTCCCTGCGGTATATGTCAACAATATTTCCCAAACGAGCGAGAAAAAAAACAACATCAAAACAAGAAACATTATAAAGGACCTTTTTACAACTGTTTAGACTGCAAAAGAAAATTCCGCTCGATCGCGAGTTTGAAAGTACATGAGAGAACGCACGCAAATAATACTGTTGACAAGAAATGCGATGTATGTGATGAGCTATTTTCCAGCAGCTTTAAAATGCGAAATCATTTGATGAATCATTCAATGATAGAGAAGATAAAGGCTCAGGATAGGAGAATCAATCATAAATTAATGACCTCTAAAATAGTTAAACAGAAAAAAAATCCTGTTAAGACTATGAAGATTATGAAGAAAAGTGAATTTGTCTTGATGGATGGTGAAGGTGTACTCGATTTGGGACTTCAAATTACACATGTACAAGGAAGTGGAACTGGAGGAGCATTCCACGAATTTTTGCGAGGCGAGCAGCAAACATCTAGCACTGTTGAAAATCTAAATCAACAAAATGATTCAAAATTTATTTTTGACGCAACGCTTCTTTATAAATGCGATATCTGTGGCAARATATACAAACATCTA
Protein Sequence: MKKPRSKWEIPSELVCRNHFSKEDFKGDKIKDTAVPSFNLKPSLEETTKKFECMENSVERFDEIDSDLDVDELLVSFETTPPLPDQMFFDAIAEKPADESFTTPIIIPVKSFVPEDNSPQTCTFCGVTCPNKHRLEFHIQLRHNIPKIFACDTCPEKFDTDLYLKLHKKKKHSECTPELCSHCGLRVQDSDIWLIHKKFHKRYPEKSGTIPRMLIYELNKHREEKTKSLMRKTLVNGKKYEMKAKAQIVKLDVIPPLSPEVAVVIKDTGLVPKTQHINDISDPLDEEIKTNEKKLGINSGIQEVINQGSQPSLNEAPPDQENSDDFTVPCGICQQYFPNEREKKQHQNKKHYKGPFYNCLDCKRKFRSLASLKVHERTHANNTVDKKCDVCDELFSSSFKMRNHLMNHSMIEKIKAQDSECIPELCSHCGLRVQDSDIWLIHKKFHKRYPEKSGTIPRMLIYELNKHREEKTKSLITKTLVNGKKYEMKAKAQIVKLDVISPLSPEVAVVMEDKGLVPKTQHINDISDPLDEEIKTNEKKLGINSGIQDVIIQGSQPSLNEAPPDQENSDDFTVPCGICQQYFPNEREKKQHQNKKHYKGPFYNCLDCKRKFRSIASLKVHERTHANNTVDKKCDVCDELFSSSFKMRNHLMNHSMIEKIKAQDRRINHKLMTSKIVKQKKNPVKTMKIMKKSEFVLMDGEGVLDLGLQITHVQGSGTGGAFHEFLRGEQQTSSTVENLNQQNDSKFIFDATLLYKCDICGKIYKHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -