Basic Information

Insect: Parochlus steinenii
Gene Symbol: -
Assembly: None
Location: scaffold21:163322-167051[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0033 0.13 12.3 0.4 3 23 193 214 192 214 0.95

2 12 0.052 2.1 8.6 1.9 2 23 253 275 252 275 0.95

3 12 0.06 2.4 8.4 1.2 1 21 281 301 281 302 0.95

4 12 1.7e-06 6.8e-05 22.7 1.1 3 23 345 366 344 366 0.93

5 12 1.1 45 4.4 1.7 1 13 430 442 430 453 0.81

6 12 1.7 70 3.8 0.9 1 23 499 522 499 522 0.92

7 12 6.8e-05 0.0027 17.7 3.4 1 23 528 550 528 550 0.98

8 12 4.5 1.8e+02 2.5 1.0 1 23 604 627 604 627 0.87

9 12 0.11 4.5 7.5 1.8 1 23 632 655 632 655 0.97

10 12 0.0003 0.012 15.7 2.3 2 23 662 684 662 684 0.96

11 12 0.28 11 6.3 0.6 3 23 692 713 691 713 0.87

12 12 0.29 12 6.2 4.5 2 23 719 740 718 741 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0033	0.13	12.3	0.4	3	23	193	214	192	214	0.95
2	12	0.052	2.1	8.6	1.9	2	23	253	275	252	275	0.95
3	12	0.06	2.4	8.4	1.2	1	21	281	301	281	302	0.95
4	12	1.7e-06	6.8e-05	22.7	1.1	3	23	345	366	344	366	0.93
5	12	1.1	45	4.4	1.7	1	13	430	442	430	453	0.81
6	12	1.7	70	3.8	0.9	1	23	499	522	499	522	0.92
7	12	6.8e-05	0.0027	17.7	3.4	1	23	528	550	528	550	0.98
8	12	4.5	1.8e+02	2.5	1.0	1	23	604	627	604	627	0.87
9	12	0.11	4.5	7.5	1.8	1	23	632	655	632	655	0.97
10	12	0.0003	0.012	15.7	2.3	2	23	662	684	662	684	0.96
11	12	0.28	11	6.3	0.6	3	23	692	713	691	713	0.87
12	12	0.29	12	6.2	4.5	2	23	719	740	718	741	0.94

Sequence Information

Coding Sequence: ATGACGTTTCTACTAGTACTTTTGAGAACTGTAAGTCTCTTTGAAAAACAAAAATCCTATACTGAAAGTCATCAAGTAAAGCAGTACAGCTTGGCAATGACGGATGCATTCGATGTGTCCAAAATTTGCCGTGTTTGTCTCTCAGAGTTCCCGGAAAGTCCTGTAGATTTTAGCACAAATGTTTTTTTCGAAGGTGAAGATGAGACAAAAATCAATATCACCGTAAATGAATGCTACACTGAATGCACTGCAGTAGAAGTGGAATTAAAGAAATTGCCCCGAACTGACGAGCTCACGGATGATGAGGAACCTGAGGATGAAAATGATTTGTTTGGATTTTTGGAGTTAAGCAAGAAGGAAGAAGGTTACGAAGAAGAAGAGGAAAATGGAGGAGGAAAGGTGACCAAACTAATGAACCCCAAGAAAGAGAAATTCATGTCGGATGACGACGAACCAGAAGAACCCGTGGACGATGAAAATGATCATGATTATGTGGTCGAAGAGTACGATGTTGCTAGTATTGATGTCAAATACACAAAAATCCGKGATAAAATCACCAATAAGATCAAAATCCTTTGCCAAACTTGTGGTTCCAGTTTTGCTACTCGTGAAAACTACAACATTCACTACACGATTCAGCACATGAAAACTGCCACCACAAAGGTGAAGAAAAGTCAACTGCCACAAAATGACGAGTCTGATTATGAGGAAGTTACTGACAAGGTGAAGGAAACAAATGCCACTCGCCGTACGATGACATGTAAACATTGCCAAGAAGTCATGCAAAGTGACTTTAATTTAATCAAACATATGAGAGAGCAACATTCTATTGATCGAGTGTTTAAATGCGAGATTTGTTCTAGACGTTTCCTTTTGCGCAATAATTTGAGCTACCATCAGCGTAACGGAGTTTGCTTGAACTTGGTACCCAAGTCGGGAGTAAAAAAAACAAAAGAGTCTAAAACGCCATTAGATCGAGTGCCACCACATGCTGTTACTCTAGACTCTGATACTATGGCCACCAGACCAATGTGCTCTGACTGTGGAAAAACTTTTTCCAACAATTCCAACTACAAGACGCATTATGTCAAGGCACATTTAGAAGATATGCAGCCCGAAGAGCTTCTTGACGAGGTCGAAGCCACTGACGAGTCGATTGTCCACGTGAAAGACGAAAACGAAGTTTCATACAACGATCCTGAGATCATTGAAATGGACATACCCGTTAGTTCTACTGGAGTGCCACAACCCGAAAAAGTCTTTGATATGACAGCCAACAAATCCAAGTTCATGTGTCGTATCTGCAGGAAAATGTTCCGCTCGATTCCCACTTATCAGTTCCATTACGTGCACAAACATTTGGGTAATCCTCCGACTGATGARAGCTTTAATGAAACGATGGAGAGCGAGCCTTCATCTTCTAAAAAAGAGCCACCTAAGGATAATGAAGAGTCAGATATGGAGGAAGTCAGCACTGAGAATAATAAGAGAGTTTACAATTGCAAGCATTGTACAGCTGAGATTATTGGAGAACTAAAAATGCTGAGGCATATGAAGACTTTGCATGGCGTGCATCGCCCATTCAAGTGTAGTGTGTGTGGAAAACGGTTCAACTTACGAACCAACTGGAAGGCTCATTTGAAGCATCATCCTCAATTGTTCAAGGATGAGCATGGTCAACAGTTAGTTGGCAACGACGATGATAATTGGCGCGAATATGTGGATATGCATTGTGAAGAGTGCCATGAATGCCCCGATGTCTTTGCGTTTGCTAGGCATGTTCTGCAAGTCCATGAAGTTGAAAAACCTTTTAAATGTTTGGAGTGCAATTTTAAATCTGCTCGCACTCAGTTACTTTTCTTCCACATTGATCGAGCTCACACTAATGTTGTTCATCAGTGTGACGAATGCGGCGCCCTTTTAAGGTCTAAACGCGCTCTACTGTGCCACATGAAAACTGGTCACAACACTCAAGAAAAACGTGTTTGCTCCACTTGCGGCGAAACTTTTGTGAATGAGACACTATTACGTCATCACCACAARGTGGAACATTTGGGACTGAAACCAGCCAGCTGCTTACTTTGTGACAAGGAATTCACACGTATTGACGCTTGCCGTGATCACATTATTGCTTCCCACATCAAGTTTAGCATTTCTTGCGATTTGTGCAGTGCTAGTTCAGCCACTAAGAAAAGATTGAAGCATCATTAYAATAAACATCATAGACAACACGTTGAGTACTTGGACAAACTTAAGTCCATCAAGACTATTCAAATTCCCGATGTGGAGGAGCATGTCTTCAAGAATCCTGCATTCTTCGATGCTTAG
Protein Sequence: MTFLLVLLRTVSLFEKQKSYTESHQVKQYSLAMTDAFDVSKICRVCLSEFPESPVDFSTNVFFEGEDETKINITVNECYTECTAVEVELKKLPRTDELTDDEEPEDENDLFGFLELSKKEEGYEEEEENGGGKVTKLMNPKKEKFMSDDDEPEEPVDDENDHDYVVEEYDVASIDVKYTKIRDKITNKIKILCQTCGSSFATRENYNIHYTIQHMKTATTKVKKSQLPQNDESDYEEVTDKVKETNATRRTMTCKHCQEVMQSDFNLIKHMREQHSIDRVFKCEICSRRFLLRNNLSYHQRNGVCLNLVPKSGVKKTKESKTPLDRVPPHAVTLDSDTMATRPMCSDCGKTFSNNSNYKTHYVKAHLEDMQPEELLDEVEATDESIVHVKDENEVSYNDPEIIEMDIPVSSTGVPQPEKVFDMTANKSKFMCRICRKMFRSIPTYQFHYVHKHLGNPPTDESFNETMESEPSSSKKEPPKDNEESDMEEVSTENNKRVYNCKHCTAEIIGELKMLRHMKTLHGVHRPFKCSVCGKRFNLRTNWKAHLKHHPQLFKDEHGQQLVGNDDDNWREYVDMHCEECHECPDVFAFARHVLQVHEVEKPFKCLECNFKSARTQLLFFHIDRAHTNVVHQCDECGALLRSKRALLCHMKTGHNTQEKRVCSTCGETFVNETLLRHHHKVEHLGLKPASCLLCDKEFTRIDACRDHIIASHIKFSISCDLCSASSATKKRLKHHYNKHHRQHVEYLDKLKSIKTIQIPDVEEHVFKNPAFFDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -