Pste002779.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- RCC2
- Assembly
- None
- Location
- scaffold132:94786-99745[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00029 0.012 15.7 0.3 1 23 23 45 23 45 0.97 2 12 0.0021 0.086 13.0 0.4 3 23 52 73 50 73 0.94 3 12 0.024 0.97 9.6 1.8 3 23 80 100 78 100 0.96 4 12 0.00028 0.011 15.8 1.7 3 23 107 128 106 128 0.96 5 12 3.8 1.5e+02 2.7 2.1 1 23 134 157 134 157 0.95 6 12 2 79 3.6 2.1 1 23 163 185 163 185 0.96 7 12 0.00014 0.0056 16.7 3.2 1 23 232 254 232 254 0.98 8 12 0.018 0.73 10.0 1.3 2 20 384 402 384 406 0.85 9 12 5.6e-05 0.0023 17.9 2.3 1 23 412 434 412 434 0.98 10 12 0.02 0.8 9.9 1.2 2 23 441 462 440 462 0.92 11 12 1.8 73 3.7 3.1 1 20 468 487 468 489 0.81 12 12 0.18 7.2 6.9 0.0 3 21 567 585 565 586 0.93
Sequence Information
- Coding Sequence
- ATGGACGGTTTACTAGATGATGACCAAGAAAGCGGTGAAGAAACGGTACTCAATCAGAATGAAAAATTTATATGCAGTATTTGTGGTAATAGCCTCAAGACCAAAAATAGCTTAAAGGAACATTTAGAAATACATACAGATAAAAAATTAGCTTGCCTTAAATGCCTGAAAGCTTTTAAATCGTCACGACTCCTAAAAGCTCATGAAAATTCTGTGCATGTAGCAAAACCAGTAAATTGCTTAGTATGCAGTCAACTTTGTATGAACAAACAAGCCTTGCAGCGCCATATGAATACTCATTTAGGAAAATTTAAAATTTGCGAAGTGTGCCAAAGAAAATTTTCCAATAAAACTCAACTAGATCAGCATCGCAAAAGAGAACATGAAGAAATCGGTTCATTTGAATGTGTTTACTGTCAACATCTAGCCCAAACAAAATTTGCCTTGGAGGAGCACATAATAAGATGTCATAGTTCAGGTAGAATCTTCCAATGTATTAAGTGTGCCAAAATTTGTGAGACTGAACAAGAATATAAAGAACATCAGCAAAACCACAGAAATGAATTATCCGAGAATAATCTTATTAAGAAAAATTATAAGGATAAACCAATAATTTGTGAGATTTGTCAAAAATGGAACAGAGGAAAATGGTGGTATGAAGTCCACAAGCGAACTCACACAAATGAGCGACCATTTAAATGCAAAGAATGCTCCAAGTCTTTTGCTTGTAATGGAGCTCTTACTAAACATATGAAGCTCCACTCTTCCACTTACGATTATCAATGTGATGATTGTGCAATTCCCCGAGAAACTTCTCAAGAAGTTTTAGAAGAAATTGAAGAGCAGTATGAAATAATGGAGGTGGACTATGGAGAAGGTTTTATTTATAATGATCAAGGAGAGTGTTTGAATGAAAATGAAGACTTTATTTGCGAAGATGTGGATTTGACCAAAGAAGCTTCTGTAATTATTATCAATGGTTACAATTCCGAGTACGCCGTTGTTCAGAACGAAATTCAAATGGGAATGATAGAAGAGAAATCTGATGAAGAACCGACCAAGTCCATGGAGGTTTTACGGAAAGAGCAACGATTACTTAATGGGAGAAAAGTTGCTGAAGCAAAATTGATATTCAACACTTTATCAAATCGATGCCAATATTGCAAAAAAAGATTCGACAGCAAAGAGCAACTTTCTTTCCATATTGTTGAGACTCACGTTGCTGATCGTCCTTTTGAATGCCAAATTTGTGAGTTTAGATTCAAGGTGAAGGCGAAGTTTAAGAGACACATGAAAATTCATTCTGATAAAAAAGATCTAGAGTGTCCTGTTTGTGGATATAAATGCGCTAGAAGTGATAACATGAATTGTCATATTGAAGGCCATGCTAAAGTTAAAAAGTTTGCATGTAAATTTTGTCAGAAAACTTTTCGCTGTTTAACGGACGCAAATTCTCATATGTTCAAGTGCAAAGAAAAGCAGAATAAACAGGAAAAGGCAACATCGAAAATTATTCGATACACAAGTTTGGAGAAAATTAATTCAGCTACGAATGATATAGGAGCTATTACAGAATCACCAATTTTGAGATATAGGTGCGCTATTTGCCTGATGAATGAAGAGGAGCACGTGAAAATTGAACACTTACTAGAAGAATCTAAAAAGACTACATTATCGAAGCAAAAGAGTTCCCTAGCTTGTGACATTTGTGGTCTTGAACTGAGTGGGATGAGACAGTTGAAACAACATCAAATGGTATTATTAAAAATTAGTCCTGTTCATTTAAGTTTTCTGCGGTCAATTAGCAAAATTAAGAGACGAGTACTCCTCCAAGATGTAGAATCATTACCAGAAAACTCACATAAAAAGCCGAAAAGATCTCAAAACAGAGTTTACGTCTTTGGATTAGCAGAAACAGGAGCTCTTGGAATACAGCATTCCTTGAAAAAACACAAAGAAAGACAAACTAGCTTTGTTCAACATCCATCTCGTTTATCTTTTGGAGAAAAGAATCATGTTCTAGATATTGCTTGTGGATATGGATTTTCTTTATTTGCTGTTAAAGAAGAATATGATATCAGTCTCTATGGAACTGGTATTAATACTGACTCACAATTAGGCTTCCACAAACACGGCGGAGTAACAAATAAACCCATTGAGCTGATGATATACCCTGCACCAATAAAGTTACCTCAAAAAGATGCTGATGAGAAAATTCAAGTAGTAAAAGTAGGTGCTGGAAGAGCTCATTCTTTAGTTTTATCAGAAAGTGGTTCAATATTTGCATTAGGAAATAATTCTTACGGAAGCTCGTTGATTCATCGAATGGAAGCGGAGACATTCAATGGTCAGAAGATTGTGGATTTAGTTTGCGGACAAGATCTTAGCTTATTTATCACAGAAAGTGGATCTTTATTTTCTTGTGGTTGGGGAGCTGATGGACAAACTGGTCTTGGAAATTACGACTCAGTAGATCAGCCTACTTTAATTCAGGGAGAAATTTCAAAGGAAAAAATCGTTAAAGTTGCTAGTTCTGCTGATTGTGTACTTGCTCTGAACGATAAAGGAGAAGTTTTCGGTTGGGGGAACTCAGAGTATGGACAAATTTGTGTGGATGGGGAGCAGCAAAAAATGGAGACGTATTTGTTTGGGGATTTGGATTACTAG
- Protein Sequence
- MDGLLDDDQESGEETVLNQNEKFICSICGNSLKTKNSLKEHLEIHTDKKLACLKCLKAFKSSRLLKAHENSVHVAKPVNCLVCSQLCMNKQALQRHMNTHLGKFKICEVCQRKFSNKTQLDQHRKREHEEIGSFECVYCQHLAQTKFALEEHIIRCHSSGRIFQCIKCAKICETEQEYKEHQQNHRNELSENNLIKKNYKDKPIICEICQKWNRGKWWYEVHKRTHTNERPFKCKECSKSFACNGALTKHMKLHSSTYDYQCDDCAIPRETSQEVLEEIEEQYEIMEVDYGEGFIYNDQGECLNENEDFICEDVDLTKEASVIIINGYNSEYAVVQNEIQMGMIEEKSDEEPTKSMEVLRKEQRLLNGRKVAEAKLIFNTLSNRCQYCKKRFDSKEQLSFHIVETHVADRPFECQICEFRFKVKAKFKRHMKIHSDKKDLECPVCGYKCARSDNMNCHIEGHAKVKKFACKFCQKTFRCLTDANSHMFKCKEKQNKQEKATSKIIRYTSLEKINSATNDIGAITESPILRYRCAICLMNEEEHVKIEHLLEESKKTTLSKQKSSLACDICGLELSGMRQLKQHQMVLLKISPVHLSFLRSISKIKRRVLLQDVESLPENSHKKPKRSQNRVYVFGLAETGALGIQHSLKKHKERQTSFVQHPSRLSFGEKNHVLDIACGYGFSLFAVKEEYDISLYGTGINTDSQLGFHKHGGVTNKPIELMIYPAPIKLPQKDADEKIQVVKVGAGRAHSLVLSESGSIFALGNNSYGSSLIHRMEAETFNGQKIVDLVCGQDLSLFITESGSLFSCGWGADGQTGLGNYDSVDQPTLIQGEISKEKIVKVASSADCVLALNDKGEVFGWGNSEYGQICVDGEQQKMETYLFGDLDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -