Basic Information

Insect: Parochlus steinenii
Gene Symbol: ush
Assembly: None
Location: scaffold18:53807-60418[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.031 1.3 9.3 0.2 1 20 188 207 188 209 0.92

2 9 0.00034 0.014 15.5 0.8 1 23 247 269 247 269 0.98

3 9 0.033 1.3 9.2 1.4 2 21 308 327 308 328 0.92

4 9 0.063 2.5 8.3 3.3 2 21 683 702 682 703 0.94

5 9 0.0021 0.084 13.0 0.0 3 21 740 758 738 759 0.91

6 9 0.0006 0.024 14.7 0.1 1 23 802 824 802 824 0.99

7 9 0.048 1.9 8.7 0.9 1 23 830 852 830 852 0.98

8 9 0.096 3.9 7.7 0.5 1 23 902 925 902 925 0.94

9 9 0.19 7.4 6.9 0.8 2 21 1069 1088 1068 1089 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.031	1.3	9.3	0.2	1	20	188	207	188	209	0.92
2	9	0.00034	0.014	15.5	0.8	1	23	247	269	247	269	0.98
3	9	0.033	1.3	9.2	1.4	2	21	308	327	308	328	0.92
4	9	0.063	2.5	8.3	3.3	2	21	683	702	682	703	0.94
5	9	0.0021	0.084	13.0	0.0	3	21	740	758	738	759	0.91
6	9	0.0006	0.024	14.7	0.1	1	23	802	824	802	824	0.99
7	9	0.048	1.9	8.7	0.9	1	23	830	852	830	852	0.98
8	9	0.096	3.9	7.7	0.5	1	23	902	925	902	925	0.94
9	9	0.19	7.4	6.9	0.8	2	21	1069	1088	1068	1089	0.92

Sequence Information

Coding Sequence: ATGAAAGAATCCGTAAAGACTTTAAACTATGGAGTGTTATTGCCAATTAGAGATGATGAAGAAGTAGTTGGTGATGAAAATAACGCAGCTCCTCAAAACGAAATTGATGAGCCACTAATGGATGAAGAGCCGTCACCTAATCACTGTGAAACAGTGAAAAGTGAAACAACGTCTCCACGATGTGACTCACCTGAAATTGACTGTAAAGCTGTAGACAAATTAGGGAATTGTATAAAATTAGGAGAGAAGCGTCCTTTTGAAAATGATCATGATGAGTCTTCGCTCTCACCAATTCCAATGGCTAAGATTATGCCCACTTTGCGGCTGAACACTGCTCTTTGCTCAGACCCCGCAAATAATCCTGATGCCAAAGAAATAAAGAGCATTCATGTAAAGAGTGAAGAGAATAAGTCTGAGGATGAGGATGACATTGAAGCTCAAATCTCAACGTCTATTAAACGACAACATATAACGCAAGCTAAAGCAAAGCTTGACAATTCATCATTAGTTAATCCATTAGTAGCCAAGACCATTGAAATGAGCGTTGGAAGGCCAAACGTATTTTTCTGTAATCCTTGTAGTATCCGATTTTCGTCAGCATCAACTTTGGAAGCTCATCAAACATATTATTGTACGCACCGTGAAAATGCTGATGAACCACCACAAAAAAATCCTGTGACTAATGCAGATGGTACAACTTCAGAGCCACCCAATAAAGCCATTAAGACTGGTAAACAGTACGCTTGTACTCAATGCTCTTACAGTGCAGATAAGAAAGTCTCGTTAAATAGACATATGCGAATGCATCAGTCTTCTCCAGCACCCAGCTCTACTACATCAAATGGTGGAGATGAGAATCCTGCAAGTCAAACCCTACCACAGCAACTTATCGGTCCGGCACCTCCACAGGTTATCGATAGATACTGTTCAGAATGTGACATTAGATTCTCAAGTACCAAAACATACCGAGCTCATAAGCAACATTATTGCAGTTCACGACACAGAGAAGGACAACCAAATAATTTACCATCTTCATCTCCTTCCGCCATAAAAAATCCAGCTAAATCCGGATCTCAGAGTCCACCAGAAACAGTTAAAACACCACCTTCAACTCAACAGCAACCATTCCTCACCCTTCCAACGAATCCGATCATAATCATTCCTTACTCGTTAATTCGAAATGCTAGCATTTTTCCAGGACCACTAACGACGATTGCTCCAAATGTAGCTAATCCCGACTCTGCCTGTTTCATTCTTCAAAACGGATCATTACAACCAATTGCGTATTCATTAGCTTCAATGTCAGCTGGTCCTAACAGCACTCCACAGCCAACAACCGCAAGAAACACTCCATCCGTTCAATCTCAAAACAATGTGGACCACAAAATCAAAAATACTGAAAGTACTGGCATGAGCATTTCAGGAAGCACTGGAGAGACTATTAAGGTAGTCAACAAAGGAACCGGAAAAGAACCATCGACACCACTGGATTTATCAGTTCGTCGTTCACCATCATCAAACCCCAGGGAACGGAGCGTATCAATGTCTTCAGCAATGTCGGCAGAACATCTTCGCATGGAATTTGAGTCTATGATGGAAGGAAAAGAAAATGCCTCGAACAGCGGTGAATCCATAACACCAGAGCAAATTGTGTGCGCTCCATCTCTTCCAGGAAGTCCACCGCTCACTCCATCACCAAAGCGAAGATCACAAAGTCCTAGAAGTGGCACAATTTCAATTTCTCCGAATTCTGTACTCGCTCACCAACTTTTGATGCGTCCATTACTTCCAGCTGAAATTGCATTAAGACTTTCAGACCCATCTTTGAATATTTCACCACAACTTCTGGTAAAGCAAAGTATGGAGTTAGCGTTGAGATTATCATCTGCCAGCAGCAACGATGGATCTCCCAAACAAATATCCCCGCGAATGCAACAGCCACCGGCGCCAAATCAACCAATAAACTCACCAAATAAAAATCACTCGCCAAGTTCAAACACGAGTAACAACCTGCCACCACAAATTTTCGTCAAACAAGGTGTATCAAAGTGCAAAGAGTGTAACATAGTCTTTTGCAAGTATGAAAACTATTTAGCACATAAAAAGCATTATTGTTCTGCCAGAAATGTTGAAGATTCTGAAGGAAATATCAAGTCATCTCCACCAATCTCACCACAAGCCACTAGTCCATCTGCCATTGCCTATCAACAGCTTATTTGTGTAGCCTGCGGAATAAAATTTACGTCTTGGGATAATTTAAGCGCCCATCAAATGTACTATTGTCCAAAGCGGCAAGAGCTTCAAGCACAAGCTTCAGGTGTTAATAATATAAAAGAACGTTGTTCAAAGTGTAAAACGAATCATGAACTATCACAACCATGCACGGTAGCTGGACAAGGTGCCTATAAATGCCCAATTTGTGATGTGATAAGTCCTAGTTCAACTGAGGCTAGACGTCATATGGAAACTCATGGAGGAGTAAAAGCTTTTCGATGTGTAATATGCCGATACAAAGGAAATACTCTACGTGGAATGAGAACACACATCAGAATGCATGCTGATAAAATTTCGGGCGACAAAAACGAAGAAGATTTTATAACATGCATATTAGAAGAAGATGGAATTGAAATTCCTCCGGCATCTGCTACAAACCATGTTGGACAATCTCTGGTCACAAATACCGTCGAATTATCTCCTCAAAATTACAATTGTGATCAATGCAGTTATGCATCTACTTATAAAGGCAATGTTGTAAGGCATTCAAAATTAGTTCATTCTCCGGGTCATTCCGCCTCACAATCACCCGTTATTGGTGAGGGTGGTGAAAGCTTAATGCACAACGGACATACTCAATCAAAGACTCCAAGCGATATGAGCATAATTAAGACTGAACCCCAAGATGCCATTCCTGATGACATCGAAGAAGAAATAGATGAGCCTTCGTTGATTCCTGAAACTATAATCAAAGTAGAAATCAACGATCAAATAGACTCCAATACGCCCTCGCCTGACCAGATGGATTTTAAGTATCAAATCAAAGTAAATAAAGGAGCTCTAAACTTTCCAAACAAGACTCCATCTCCTACCGCCCGAATCCTTACACCAAAATCTCAATCTAACGTCATCAGCGTCATTCAAACTCGGACTTCTCCGCAAGTTTCTCCACCACTCGACCTGAACTTACTGAGCCCYAACGGATCCAAATATTGCAGCACTTGTGACATCACCTTTAACTATACAAATACTTTCATTGCACATAAAAAGTTTTACTGCAAGGCTAATAAGGTAGAGTCTTCTAGACCCAATAGTGGCCCATCACCTGGATCAAATTCTGTGGTTGTCACGAGGGGAGCTGAAACTTCTGTTTTATAA
Protein Sequence: MKESVKTLNYGVLLPIRDDEEVVGDENNAAPQNEIDEPLMDEEPSPNHCETVKSETTSPRCDSPEIDCKAVDKLGNCIKLGEKRPFENDHDESSLSPIPMAKIMPTLRLNTALCSDPANNPDAKEIKSIHVKSEENKSEDEDDIEAQISTSIKRQHITQAKAKLDNSSLVNPLVAKTIEMSVGRPNVFFCNPCSIRFSSASTLEAHQTYYCTHRENADEPPQKNPVTNADGTTSEPPNKAIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSTTSNGGDENPASQTLPQQLIGPAPPQVIDRYCSECDIRFSSTKTYRAHKQHYCSSRHREGQPNNLPSSSPSAIKNPAKSGSQSPPETVKTPPSTQQQPFLTLPTNPIIIIPYSLIRNASIFPGPLTTIAPNVANPDSACFILQNGSLQPIAYSLASMSAGPNSTPQPTTARNTPSVQSQNNVDHKIKNTESTGMSISGSTGETIKVVNKGTGKEPSTPLDLSVRRSPSSNPRERSVSMSSAMSAEHLRMEFESMMEGKENASNSGESITPEQIVCAPSLPGSPPLTPSPKRRSQSPRSGTISISPNSVLAHQLLMRPLLPAEIALRLSDPSLNISPQLLVKQSMELALRLSSASSNDGSPKQISPRMQQPPAPNQPINSPNKNHSPSSNTSNNLPPQIFVKQGVSKCKECNIVFCKYENYLAHKKHYCSARNVEDSEGNIKSSPPISPQATSPSAIAYQQLICVACGIKFTSWDNLSAHQMYYCPKRQELQAQASGVNNIKERCSKCKTNHELSQPCTVAGQGAYKCPICDVISPSSTEARRHMETHGGVKAFRCVICRYKGNTLRGMRTHIRMHADKISGDKNEEDFITCILEEDGIEIPPASATNHVGQSLVTNTVELSPQNYNCDQCSYASTYKGNVVRHSKLVHSPGHSASQSPVIGEGGESLMHNGHTQSKTPSDMSIIKTEPQDAIPDDIEEEIDEPSLIPETIIKVEINDQIDSNTPSPDQMDFKYQIKVNKGALNFPNKTPSPTARILTPKSQSNVISVIQTRTSPQVSPPLDLNLLSPNGSKYCSTCDITFNYTNTFIAHKKFYCKANKVESSRPNSGPSPGSNSVVVTRGAETSVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -