Pste009475.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold612:29323-33454[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0019 0.075 13.1 2.3 2 23 307 329 306 329 0.93 2 18 7.8 3.1e+02 1.7 1.7 3 23 336 356 335 356 0.77 3 18 0.0013 0.052 13.6 2.0 1 23 362 386 362 387 0.95 4 18 0.00069 0.027 14.5 1.3 2 23 391 412 390 412 0.95 5 18 0.36 14 6.0 2.2 1 23 420 443 420 443 0.94 6 18 0.93 37 4.7 1.6 1 23 446 468 446 468 0.96 7 18 0.00028 0.011 15.8 0.3 2 23 475 496 474 497 0.95 8 18 0.0007 0.028 14.5 1.2 1 23 506 528 506 528 0.97 9 18 2.6 1.1e+02 3.2 1.2 1 22 533 554 533 557 0.83 10 18 3.1 1.3e+02 3.0 0.3 2 21 562 581 561 582 0.90 11 18 3.1 1.2e+02 3.0 2.0 2 23 633 654 632 654 0.83 12 18 0.092 3.7 7.8 0.5 1 23 660 684 660 684 0.96 13 18 0.034 1.4 9.2 0.5 2 23 689 710 688 710 0.95 14 18 0.16 6.6 7.0 1.4 1 23 718 741 718 741 0.95 15 18 1.2 47 4.3 0.9 1 23 744 766 744 766 0.97 16 18 0.00029 0.012 15.7 0.3 2 23 773 794 772 795 0.95 17 18 0.00055 0.022 14.8 0.5 1 23 804 826 804 826 0.97 18 18 2.9 1.2e+02 3.1 0.6 2 21 860 879 859 880 0.89
Sequence Information
- Coding Sequence
- ATGTGGCGCAAACATATCATATCTTTTCATGAGGATTTCAGGTCTTCCAGTAAATATGATTGGAGAGATTCTAAAATTGACTCCGAACATAATCGCCCAAATATGTTTGAAATGAATCTTTCACAGGCGAAACCAAAATTCTTTCTTCACACATTTCATTACCAAGCTTTGCATCTTTTATCTGAATCTGCAGAAATGTCAAACTTGGCGACATTTTTAAGGTCACAGCTACATCTCAAGGACATAAAGATTATCTTGGGCTCTGCAATTTGGCGAGAGACTATTCAAGCCATCATTAGTTTACCGAATCTAAAAACACTATATTTGAACCTTAAAGACTCAAGCAGTTGGATTTCAGCTCTACAGGATCTACATTGCCGGAATAATGGGCTTGGATCGATGAAACTGAGAGTGAATTGCCTTGAAAGTGCAATAAATATTGTCAATTCATTTGTTGGCTTGAAACACTTGGATCTAAAACTATGTGAGGCTAAAGTGCCAGAATCTAAAATATCTTTCGACCATCTGGAAAATCTTCAAAGCATAAAATTCACCCTCTTTAGGAATGAATTTTCCCTCCTAACCTCTCCTGGAATACAAATGAAGAACTTGAAGGAATTAAATCTTTCTCATGTTAGGGGAATGGAAATCAAAAAATGGCAGACATTCATCGCTAGTAACTCAAATATCAAAGTAATTCGAATTTTCGGTGGACATAACGTTTGCTTTGAAACTTTGGCTCTTTTCACTGCTAATCTCAAGCAACTTCAAGTCCTAGAGATCGATCAAACTGTAGCAGAATCAGAACTAAAATCAGAATCAGAATCAGAAACAGAATCAAAGTCTGAAACACCTGAGCCTCCCAAAAAGAAACTGAAAACTCCCAAAAAGAAACTGAATACTGAGAATCAAAATCTTCAATGCTTGCAGTGCCCAAAGTTTTATATCAATAAGCACAAATTGAGGAGACATGTATATTCCGTTCATTTGAACAAAGCGAGAATATGTGATGAATGTGGGAGCGTCTTTCCGACTGCGAAGATCTGCAACCAGCATAAAAAGAAGCACATTGTTAGGTACACGTTCAAGTGCCGTTTACCCGATTGTTCAGCTGCATTCCGTGACAATAAAGGATTAACATCACACAAAAGACGTCATCATGTTATTAATCAATGTTCAATCTGCAACTTTAGATTCAAAACTCCCGAAAAGCTGAAACTGCATACAACTGCCCATCGAGAAGATGGACTTTTAATTTTCGAATGCGATTTATGTTCTAAAATACAAAAAACGGAGGAATATTTGAGGAAGCACAAATTTAGAAGGCATGGTGTTTTTACGTGTGGAATTTGTGACTTTACAAGCTACGAGCATAACGAAATCGAAAATCACAAACAAAGCCATATTCCAGAAAAAACCATCAAATGTCCCGAATGTGACAAACTTTTTGCTGGAAAGCAAGGATTGAAATTACACATTTCAGTTCATCACATCAAAGGTGATAGTAGACCCACATTTGTTTGTGACGTATGCGACAAAGTTATTTTCGACAAGCATGCTCTGCAAAAACATAAAACAATGCATCTCCCTACAGAATACATTTGTATTGGATGTTGTCGTAAGTTCCAGTCGGCCGACGATTTAAAAGCTCATAAACAAAGGAATGATCATGGAAAAGGATTAAAATGCCCTATTTGCAGTGACAAGTTTCAATTACCTTGTTTACTGGAGATACATACTAAAGAATGCTCCTCTGGAAAGTTTTTGAGGGTTATTCTTGATCACTGTTCCACTAATTTCAAATTGGATTCGGTACCAAAAATTGATCAGTGGATCATTAACGTGAAATTGAGGAGACATATAAAATCCGTTCATTTCAACAAAGCAAACAAACAAAAATGTGATGAATGTGGCAGCGTCTTTCCGAGTGCGAAGATTTGCAATCAGCATAAAAAGACGCATATTTTTAGGTACACGTTCAAGTGCCTTTTACCTGATTGTTCAGCTGCATTCCGTGACGATAAAGGATTACTAAACCACGAAAGACATCATCGTGTTATTAATCAATGTTCAATCTGCAATTTGCAATTAAAAACTCCTGAAAAGCTGAAACTGCATACAACTGCCCATCGAGAAGAAGGACTTTTAATTTTCGAATGCGATTTATGTTCTAAAATACAAAAAACGGAGGAATATTTGAGAAAGCACAAATATAGAGTTCATGGTGTTTTTTCGTGTGGATTTTGTGACTTTACAAGCTACGAGCAGAATGAAATCGAAAATCACAAACAAAGCCATATTCCAGAAAAAACCATCAAATGTCCCGAATGCGACAAACTTTTTGCTGGAAAGCAAGGATTGAAATTACACATTTCAATTCATCACACCAAAGGTGATAGTAGACCCACATTTGTTTGTGACGTATGCGATAAAGTTAGTTTCGACAAGCAAGCTCTGCGCAAACATAAAACAATTCATCTACCTACAGAATACATTTGTATTGGATGTTGTCGTAAGTTCCAGTCGGCCGACGATATTAAAGCTCATAAGAAAAGGTATGATCATGGAAAAGGATTAAAATGCCCTATTTGCAAGGACAAATTTCAATTACCTTGTTTACTGGAGATGCATACTAAAGAATGCTCTTCTGGACATAAATATTCTTTATCGATACACAAAAATTAA
- Protein Sequence
- MWRKHIISFHEDFRSSSKYDWRDSKIDSEHNRPNMFEMNLSQAKPKFFLHTFHYQALHLLSESAEMSNLATFLRSQLHLKDIKIILGSAIWRETIQAIISLPNLKTLYLNLKDSSSWISALQDLHCRNNGLGSMKLRVNCLESAINIVNSFVGLKHLDLKLCEAKVPESKISFDHLENLQSIKFTLFRNEFSLLTSPGIQMKNLKELNLSHVRGMEIKKWQTFIASNSNIKVIRIFGGHNVCFETLALFTANLKQLQVLEIDQTVAESELKSESESETESKSETPEPPKKKLKTPKKKLNTENQNLQCLQCPKFYINKHKLRRHVYSVHLNKARICDECGSVFPTAKICNQHKKKHIVRYTFKCRLPDCSAAFRDNKGLTSHKRRHHVINQCSICNFRFKTPEKLKLHTTAHREDGLLIFECDLCSKIQKTEEYLRKHKFRRHGVFTCGICDFTSYEHNEIENHKQSHIPEKTIKCPECDKLFAGKQGLKLHISVHHIKGDSRPTFVCDVCDKVIFDKHALQKHKTMHLPTEYICIGCCRKFQSADDLKAHKQRNDHGKGLKCPICSDKFQLPCLLEIHTKECSSGKFLRVILDHCSTNFKLDSVPKIDQWIINVKLRRHIKSVHFNKANKQKCDECGSVFPSAKICNQHKKTHIFRYTFKCLLPDCSAAFRDDKGLLNHERHHRVINQCSICNLQLKTPEKLKLHTTAHREEGLLIFECDLCSKIQKTEEYLRKHKYRVHGVFSCGFCDFTSYEQNEIENHKQSHIPEKTIKCPECDKLFAGKQGLKLHISIHHTKGDSRPTFVCDVCDKVSFDKQALRKHKTIHLPTEYICIGCCRKFQSADDIKAHKKRYDHGKGLKCPICKDKFQLPCLLEMHTKECSSGHKYSLSIHKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -